Wall clock time and date at job start Tue Mar 17 2020 17:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.45812 * 2 1 4 4 C 1.53037 * 109.46169 * 119.95862 * 2 1 3 5 5 C 1.53191 * 109.31402 * 181.38989 * 4 2 1 6 6 N 1.46925 * 108.77417 * 305.36290 * 5 4 2 7 7 C 1.46925 * 118.73645 * 53.60695 * 6 5 4 8 8 C 1.53044 * 109.46147 * 240.02833 * 2 1 3 9 9 H 1.08999 * 109.49773 * 58.65585 * 8 2 1 10 10 O 1.42902 * 109.49311 * 298.59576 * 8 2 1 11 11 C 1.39494 * 120.63017 * 233.63281 * 6 5 4 12 12 C 1.50855 * 127.52374 * 359.68555 * 11 6 5 13 13 C 1.48998 * 111.42009 * 179.82356 * 12 11 6 14 14 C 1.31155 * 116.92175 * 0.49266 * 13 12 11 15 15 S 1.76452 * 109.79026 * 359.71788 * 14 13 12 16 16 C 1.50707 * 125.10375 * 179.71628 * 14 13 12 17 17 O 1.42898 * 109.46851 * 120.03057 * 16 14 13 18 18 Si 1.86304 * 109.46923 * 240.02717 * 16 14 13 19 19 H 1.48496 * 109.47332 * 60.00033 * 18 16 14 20 20 H 1.48503 * 109.46894 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46983 * 299.99892 * 18 16 14 22 22 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46955 * 299.97661 * 1 2 3 24 24 H 1.09000 * 109.47050 * 59.97490 * 1 2 3 25 25 H 1.09007 * 109.49518 * 301.33926 * 4 2 1 26 26 H 1.09001 * 109.49866 * 61.43094 * 4 2 1 27 27 H 1.09001 * 109.58221 * 185.57346 * 5 4 2 28 28 H 1.09003 * 109.58575 * 65.14835 * 5 4 2 29 29 H 1.09005 * 109.58334 * 186.60867 * 7 6 5 30 30 H 1.08996 * 109.58613 * 66.18638 * 7 6 5 31 31 H 0.96702 * 113.99976 * 180.02562 * 10 8 2 32 32 H 1.08998 * 109.09633 * 300.51885 * 12 11 6 33 33 H 1.08994 * 109.09826 * 59.47900 * 12 11 6 34 34 H 1.07994 * 121.53937 * 180.21704 * 13 12 11 35 35 H 1.08989 * 109.47161 * 0.02728 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7206 1.2501 5 6 3.5714 -0.6883 1.2643 6 7 4.0680 -1.2487 0.0002 7 6 3.5714 -0.6886 -1.2641 8 6 2.0400 -0.7209 -1.2500 9 1 1.6572 -0.2210 -2.1398 10 8 1.5909 -2.0774 -1.2347 11 6 4.9928 -2.2930 0.0003 12 6 5.6067 -2.9765 1.1969 13 6 6.5510 -4.0525 0.7838 14 6 6.7144 -4.2368 -0.5044 15 16 5.7077 -3.0999 -1.4031 16 6 7.6254 -5.2652 -1.1241 17 8 6.8563 -6.1559 -1.9346 18 14 8.9006 -4.4099 -2.1791 19 1 9.6997 -3.4841 -1.3369 20 1 9.7978 -5.4232 -2.7902 21 1 8.2203 -3.6407 -3.2518 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5134 0.8901 24 1 -0.3633 0.5142 -0.8898 25 1 1.6572 -0.2204 2.1399 26 1 1.6979 -1.7554 1.2385 27 1 3.9417 -1.2841 2.0987 28 1 3.9143 0.3413 1.3673 29 1 3.9417 -1.2847 -2.0982 30 1 3.9143 0.3408 -1.3674 31 1 1.8781 -2.5955 -1.9991 32 1 6.1423 -2.2380 1.7935 33 1 4.8139 -3.4146 1.8030 34 1 7.0799 -4.6499 1.5115 35 1 8.1246 -5.8297 -0.3367 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725560835.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 17:34:52 Heat of formation + Delta-G solvation = -55.852281 kcal Electronic energy + Delta-G solvation = -17702.113185 eV Core-core repulsion = 14906.759085 eV Total energy + Delta-G solvation = -2795.354101 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.100 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -37.20028 -33.38608 -32.66866 -31.41319 -28.91469 -28.16550 -25.95624 -24.19162 -21.14436 -20.97113 -19.49114 -18.43417 -17.60017 -15.82478 -14.75597 -13.41237 -13.25112 -12.88628 -12.41232 -12.27173 -12.01319 -11.56422 -11.18951 -10.85982 -10.71629 -10.45138 -10.21259 -9.92669 -9.72180 -9.62521 -9.16807 -9.13957 -8.76242 -8.63260 -8.52621 -8.45916 -8.04100 -7.88005 -7.54947 -6.37423 -6.08405 -5.79897 -4.16303 -3.94396 -3.60152 -0.86224 4.75677 4.97150 5.03999 5.58665 5.79016 6.00295 6.29735 6.34891 6.41898 6.47965 6.64839 6.83399 6.95391 7.06000 7.19559 7.28381 7.30238 7.35881 7.52084 7.67577 7.80261 7.86530 8.01749 8.11617 8.33514 8.70682 8.88405 9.11399 9.22161 9.25925 9.48238 9.85440 9.96479 10.29521 11.07768 11.73536 12.06169 Molecular weight = 257.10amu Principal moments of inertia in cm(-1) A = 0.038200 B = 0.006160 C = 0.005875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.810392 B = 4544.579767 C = 4764.520944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.073 4.073 3 H 0.064 0.936 4 C -0.128 4.128 5 C 0.173 3.827 6 N -0.549 5.549 7 C 0.138 3.862 8 C 0.087 3.913 9 H 0.028 0.972 10 O -0.553 6.553 11 C -0.576 4.576 12 C 0.109 3.891 13 C -0.276 4.276 14 C -0.071 4.071 15 S -0.113 6.113 16 C 0.066 3.934 17 O -0.872 6.872 18 Si 0.877 3.123 19 H -0.306 1.306 20 H -0.299 1.299 21 H -0.272 1.272 22 H 0.059 0.941 23 H 0.042 0.958 24 H 0.040 0.960 25 H 0.037 0.963 26 H 0.067 0.933 27 H 0.054 0.946 28 H -0.002 1.002 29 H 0.060 0.940 30 H 0.006 0.994 31 H 0.372 0.628 32 H -0.050 1.050 33 H -0.052 1.052 34 H 0.078 0.922 35 H -0.027 1.027 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.365 14.161 2.216 18.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.092 4.092 3 H 0.082 0.918 4 C -0.168 4.168 5 C 0.043 3.957 6 N -0.271 5.271 7 C 0.010 3.990 8 C 0.026 3.974 9 H 0.045 0.955 10 O -0.358 6.358 11 C -0.772 4.772 12 C 0.071 3.929 13 C -0.310 4.310 14 C -0.187 4.187 15 S 0.135 5.865 16 C -0.055 4.055 17 O -0.820 6.820 18 Si 0.710 3.290 19 H -0.235 1.235 20 H -0.226 1.226 21 H -0.197 1.197 22 H 0.078 0.922 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.016 0.984 29 H 0.079 0.921 30 H 0.023 0.977 31 H 0.218 0.782 32 H -0.033 1.033 33 H -0.035 1.035 34 H 0.096 0.904 35 H -0.010 1.010 Dipole moment (debyes) X Y Z Total from point charges -11.331 14.781 0.765 18.640 hybrid contribution 0.233 -0.345 1.251 1.319 sum -11.097 14.436 2.016 18.320 Atomic orbital electron populations 1.21782 0.96533 1.01708 0.99547 1.20957 0.94295 0.97921 0.96026 0.91800 1.22134 0.99871 1.00497 0.94321 1.20525 0.90083 0.94820 0.90290 1.42938 1.48218 1.38871 0.97056 1.21251 0.90898 0.95882 0.91004 1.22388 0.97046 0.82984 0.94977 0.95469 1.86383 1.76734 1.22652 1.50014 1.19942 1.40498 1.28770 0.88021 1.17219 0.90712 0.90244 0.94762 1.21984 1.08356 1.05590 0.95051 1.25029 0.99501 0.97809 0.96394 1.81395 1.50941 1.36689 1.17461 1.22083 0.97056 0.92547 0.93819 1.94847 1.66886 1.56714 1.63528 0.87312 0.79625 0.76819 0.85239 1.23490 1.22639 1.19688 0.92222 0.93934 0.94038 0.94419 0.91445 0.92792 0.98428 0.92136 0.97692 0.78184 1.03322 1.03459 0.90352 1.01043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.06 37.16 0.34 -3.17 16 2 C -0.07 -2.15 2.51 -90.57 -0.23 -2.38 16 3 H 0.06 1.78 8.14 -51.93 -0.42 1.36 16 4 C -0.13 -4.11 5.22 -26.61 -0.14 -4.25 16 5 C 0.17 6.32 6.50 -3.71 -0.02 6.30 16 6 N -0.55 -22.56 3.05 -166.04 -0.51 -23.07 16 7 C 0.14 5.08 6.15 -3.71 -0.02 5.06 16 8 C 0.09 2.78 3.22 -26.61 -0.09 2.70 16 9 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 10 O -0.55 -18.65 11.90 -35.23 -0.42 -19.07 16 11 C -0.58 -26.93 7.70 -8.71 -0.07 -26.99 16 12 C 0.11 5.15 5.10 -29.77 -0.15 5.00 16 13 C -0.28 -13.19 10.18 -36.88 -0.38 -13.56 16 14 C -0.07 -3.53 4.83 -36.06 -0.17 -3.70 16 15 S -0.11 -5.44 20.81 -107.50 -2.24 -7.67 16 16 C 0.07 3.23 3.07 36.01 0.11 3.34 16 17 O -0.87 -47.69 18.01 -35.23 -0.63 -48.32 16 18 Si 0.88 38.16 28.04 -169.99 -4.77 33.39 16 19 H -0.31 -12.66 7.11 56.52 0.40 -12.26 16 20 H -0.30 -12.31 7.11 56.52 0.40 -11.91 16 21 H -0.27 -12.04 7.11 56.52 0.40 -11.64 16 22 H 0.06 1.59 7.72 -51.93 -0.40 1.19 16 23 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.07 2.35 7.61 -51.93 -0.40 1.96 16 27 H 0.05 2.08 6.94 -51.93 -0.36 1.71 16 28 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 29 H 0.06 2.36 6.77 -51.93 -0.35 2.01 16 30 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.37 12.00 9.08 45.56 0.41 12.41 16 32 H -0.05 -2.35 8.14 -51.93 -0.42 -2.77 16 33 H -0.05 -2.47 8.08 -51.93 -0.42 -2.89 16 34 H 0.08 3.52 8.06 -52.49 -0.42 3.10 16 35 H -0.03 -1.30 7.90 -51.94 -0.41 -1.71 16 LS Contribution 293.98 15.07 4.43 4.43 Total: -2.00 -100.56 293.98 -9.48 -110.03 By element: Atomic # 1 Polarization: -13.54 SS G_CDS: -4.52 Total: -18.06 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: -0.82 Total: -31.66 kcal Atomic # 7 Polarization: -22.56 SS G_CDS: -0.51 Total: -23.07 kcal Atomic # 8 Polarization: -66.34 SS G_CDS: -1.05 Total: -67.39 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: -4.77 Total: 33.39 kcal Atomic # 16 Polarization: -5.44 SS G_CDS: -2.24 Total: -7.67 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -100.56 -9.48 -110.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725560835.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.182 kcal (2) G-P(sol) polarization free energy of solvation -100.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -110.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds