Wall clock time and date at job start Tue Mar 17 2020 17:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.45812 * 2 1 4 4 C 1.53037 * 109.46169 * 119.95862 * 2 1 3 5 5 C 1.53191 * 109.31402 * 181.38989 * 4 2 1 6 6 N 1.46925 * 108.77417 * 305.36290 * 5 4 2 7 7 C 1.46925 * 118.73645 * 53.60695 * 6 5 4 8 8 C 1.53044 * 109.46147 * 240.02833 * 2 1 3 9 9 H 1.08999 * 109.49773 * 58.65585 * 8 2 1 10 10 O 1.42902 * 109.49311 * 298.59576 * 8 2 1 11 11 C 1.39494 * 120.63017 * 233.63281 * 6 5 4 12 12 C 1.50855 * 127.52374 * 359.68555 * 11 6 5 13 13 C 1.48998 * 111.42009 * 179.82356 * 12 11 6 14 14 C 1.31155 * 116.92175 * 0.49266 * 13 12 11 15 15 S 1.76452 * 109.79026 * 359.71788 * 14 13 12 16 16 C 1.50707 * 125.10375 * 179.71628 * 14 13 12 17 17 O 1.42898 * 109.46851 * 120.03057 * 16 14 13 18 18 Si 1.86304 * 109.46923 * 240.02717 * 16 14 13 19 19 H 1.48496 * 109.47332 * 60.00033 * 18 16 14 20 20 H 1.48503 * 109.46894 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46983 * 299.99892 * 18 16 14 22 22 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46955 * 299.97661 * 1 2 3 24 24 H 1.09000 * 109.47050 * 59.97490 * 1 2 3 25 25 H 1.09007 * 109.49518 * 301.33926 * 4 2 1 26 26 H 1.09001 * 109.49866 * 61.43094 * 4 2 1 27 27 H 1.09001 * 109.58221 * 185.57346 * 5 4 2 28 28 H 1.09003 * 109.58575 * 65.14835 * 5 4 2 29 29 H 1.09005 * 109.58334 * 186.60867 * 7 6 5 30 30 H 1.08996 * 109.58613 * 66.18638 * 7 6 5 31 31 H 0.96702 * 113.99976 * 180.02562 * 10 8 2 32 32 H 1.08998 * 109.09633 * 300.51885 * 12 11 6 33 33 H 1.08994 * 109.09826 * 59.47900 * 12 11 6 34 34 H 1.07994 * 121.53937 * 180.21704 * 13 12 11 35 35 H 1.08989 * 109.47161 * 0.02728 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7206 1.2501 5 6 3.5714 -0.6883 1.2643 6 7 4.0680 -1.2487 0.0002 7 6 3.5714 -0.6886 -1.2641 8 6 2.0400 -0.7209 -1.2500 9 1 1.6572 -0.2210 -2.1398 10 8 1.5909 -2.0774 -1.2347 11 6 4.9928 -2.2930 0.0003 12 6 5.6067 -2.9765 1.1969 13 6 6.5510 -4.0525 0.7838 14 6 6.7144 -4.2368 -0.5044 15 16 5.7077 -3.0999 -1.4031 16 6 7.6254 -5.2652 -1.1241 17 8 6.8563 -6.1559 -1.9346 18 14 8.9006 -4.4099 -2.1791 19 1 9.6997 -3.4841 -1.3369 20 1 9.7978 -5.4232 -2.7902 21 1 8.2203 -3.6407 -3.2518 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5134 0.8901 24 1 -0.3633 0.5142 -0.8898 25 1 1.6572 -0.2204 2.1399 26 1 1.6979 -1.7554 1.2385 27 1 3.9417 -1.2841 2.0987 28 1 3.9143 0.3413 1.3673 29 1 3.9417 -1.2847 -2.0982 30 1 3.9143 0.3408 -1.3674 31 1 1.8781 -2.5955 -1.9991 32 1 6.1423 -2.2380 1.7935 33 1 4.8139 -3.4146 1.8030 34 1 7.0799 -4.6499 1.5115 35 1 8.1246 -5.8297 -0.3367 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725560835.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 17:34:51 Heat of formation + Delta-G solvation = -143.934516 kcal Electronic energy + Delta-G solvation = -17705.932718 eV Core-core repulsion = 14906.759085 eV Total energy + Delta-G solvation = -2799.173633 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.100 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.81209 -36.65386 -35.86019 -34.17932 -32.70154 -30.89803 -29.06864 -27.45207 -24.02109 -23.88013 -22.96384 -21.70760 -20.48349 -19.22112 -17.59546 -16.60284 -15.96459 -15.75569 -15.52360 -15.20553 -14.74661 -14.56169 -14.34614 -14.14832 -13.73404 -13.56770 -13.20306 -12.92518 -12.80352 -12.47547 -12.33880 -12.26064 -12.00061 -11.66973 -11.55997 -11.39533 -11.33603 -11.07516 -10.65259 -10.18548 -9.85715 -9.18241 -8.23949 -7.65234 -7.56355 -4.47717 1.27619 1.48753 1.62409 1.84445 2.05279 2.77231 3.32104 3.52218 3.76434 3.99430 4.05673 4.18398 4.40464 4.62759 4.67339 4.79885 4.86216 4.93219 4.96542 5.02275 5.05862 5.10798 5.12484 5.26521 5.30802 5.37350 5.38740 5.44308 5.54182 5.71359 6.07299 6.35610 6.58138 6.91901 7.85609 7.88032 8.63386 Molecular weight = 257.10amu Principal moments of inertia in cm(-1) A = 0.038200 B = 0.006160 C = 0.005875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.810392 B = 4544.579767 C = 4764.520944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 H 0.091 0.909 4 C -0.115 4.115 5 C 0.167 3.833 6 N -0.579 5.579 7 C 0.132 3.868 8 C 0.091 3.909 9 H 0.071 0.929 10 O -0.571 6.571 11 C -0.579 4.579 12 C 0.113 3.887 13 C -0.290 4.290 14 C -0.106 4.106 15 S -0.129 6.129 16 C -0.007 4.007 17 O -0.942 6.942 18 Si 0.972 3.028 19 H -0.269 1.269 20 H -0.258 1.258 21 H -0.287 1.287 22 H 0.038 0.962 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.029 0.971 27 H 0.019 0.981 28 H 0.024 0.976 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.373 0.627 32 H -0.053 1.053 33 H -0.074 1.074 34 H 0.097 0.903 35 H -0.035 1.035 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.054 17.474 1.773 21.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.091 4.091 3 H 0.109 0.891 4 C -0.155 4.155 5 C 0.039 3.961 6 N -0.305 5.305 7 C 0.005 3.995 8 C 0.031 3.969 9 H 0.089 0.911 10 O -0.376 6.376 11 C -0.777 4.777 12 C 0.075 3.925 13 C -0.324 4.324 14 C -0.222 4.222 15 S 0.120 5.880 16 C -0.124 4.124 17 O -0.892 6.892 18 Si 0.798 3.202 19 H -0.195 1.195 20 H -0.182 1.182 21 H -0.213 1.213 22 H 0.058 0.942 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.100 0.900 26 H 0.048 0.952 27 H 0.037 0.963 28 H 0.042 0.958 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.219 0.781 32 H -0.036 1.036 33 H -0.057 1.057 34 H 0.114 0.886 35 H -0.018 1.018 Dipole moment (debyes) X Y Z Total from point charges -12.020 18.116 0.341 21.743 hybrid contribution 0.384 -1.349 1.513 2.063 sum -11.636 16.767 1.854 20.493 Atomic orbital electron populations 1.21667 0.92965 1.01348 1.02501 1.21057 0.97191 0.98164 0.92674 0.89065 1.21920 0.95948 0.99429 0.98176 1.20723 0.93219 0.94789 0.87376 1.43126 1.49020 1.38411 0.99955 1.21489 0.94371 0.95622 0.88018 1.22480 0.93144 0.82759 0.98534 0.91096 1.86384 1.76686 1.24039 1.50483 1.20404 1.41769 1.29053 0.86447 1.17180 0.90230 0.90163 0.94900 1.22315 1.08607 1.06122 0.95375 1.25286 1.00863 0.98880 0.97176 1.81311 1.51152 1.36611 1.18952 1.23329 0.99890 0.93320 0.95823 1.94764 1.69510 1.59036 1.65900 0.85772 0.76603 0.76612 0.81181 1.19510 1.18241 1.21271 0.94246 0.90911 0.91283 0.89981 0.95243 0.96264 0.95822 0.95576 0.95523 0.78060 1.03565 1.05747 0.88555 1.01839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.65 9.06 71.98 0.65 -5.00 16 2 C -0.07 -3.83 2.51 -10.76 -0.03 -3.86 16 3 H 0.09 4.41 8.14 -2.38 -0.02 4.39 16 4 C -0.12 -6.93 5.22 30.67 0.16 -6.77 16 5 C 0.17 11.84 6.50 86.36 0.56 12.40 16 6 N -0.58 -46.81 3.05 -679.22 -2.07 -48.88 16 7 C 0.13 9.34 6.15 86.36 0.53 9.87 16 8 C 0.09 5.43 3.22 30.67 0.10 5.53 16 9 H 0.07 3.68 8.14 -2.39 -0.02 3.66 16 10 O -0.57 -37.31 11.90 -148.98 -1.77 -39.08 16 11 C -0.58 -54.21 7.70 86.94 0.67 -53.54 16 12 C 0.11 10.80 5.10 28.62 0.15 10.95 16 13 C -0.29 -27.95 10.18 24.97 0.25 -27.69 16 14 C -0.11 -10.54 4.83 25.49 0.12 -10.42 16 15 S -0.13 -12.44 20.81 -56.49 -1.18 -13.62 16 16 C -0.01 -0.70 3.07 71.24 0.22 -0.48 16 17 O -0.94 -104.38 18.01 -148.98 -2.68 -107.06 16 18 Si 0.97 80.57 28.04 68.60 1.92 82.49 16 19 H -0.27 -20.54 7.11 99.48 0.71 -19.83 16 20 H -0.26 -19.54 7.11 99.48 0.71 -18.83 16 21 H -0.29 -24.42 7.11 99.48 0.71 -23.71 16 22 H 0.04 1.89 7.72 -2.39 -0.02 1.87 16 23 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 24 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 25 H 0.08 4.20 8.14 -2.38 -0.02 4.18 16 26 H 0.03 1.97 7.61 -2.39 -0.02 1.95 16 27 H 0.02 1.44 6.94 -2.39 -0.02 1.43 16 28 H 0.02 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.03 1.99 6.77 -2.38 -0.02 1.97 16 30 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.37 23.75 9.08 -74.06 -0.67 23.07 16 32 H -0.05 -4.94 8.14 -2.39 -0.02 -4.96 16 33 H -0.07 -7.24 8.08 -2.39 -0.02 -7.26 16 34 H 0.10 8.73 8.06 -2.91 -0.02 8.71 16 35 H -0.04 -3.41 7.90 -2.39 -0.02 -3.43 16 Total: -2.00 -211.89 293.98 -1.23 -213.11 By element: Atomic # 1 Polarization: -19.12 SS G_CDS: 1.16 Total: -17.95 kcal Atomic # 6 Polarization: -72.39 SS G_CDS: 3.39 Total: -69.01 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -2.07 Total: -48.88 kcal Atomic # 8 Polarization: -141.69 SS G_CDS: -4.46 Total: -146.14 kcal Atomic # 14 Polarization: 80.57 SS G_CDS: 1.92 Total: 82.49 kcal Atomic # 16 Polarization: -12.44 SS G_CDS: -1.18 Total: -13.62 kcal Total: -211.89 -1.23 -213.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725560835.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.179 kcal (2) G-P(sol) polarization free energy of solvation -211.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -213.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds