Wall clock time and date at job start Tue Mar 17 2020 17:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -3 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86301 * 109.47119 * 2 1 4 4 H 1.48501 * 109.47272 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47064 * 299.99964 * 3 2 1 6 6 H 1.48501 * 109.47122 * 59.99442 * 3 2 1 7 7 C 1.50700 * 109.47008 * 119.99844 * 2 1 3 8 8 C 1.35350 * 126.75528 * 29.98015 * 7 2 1 9 9 N 1.35307 * 106.17738 * 180.02562 * 8 7 2 10 10 C 1.46504 * 125.86774 * 180.02562 * 9 8 7 11 11 C 1.53007 * 109.46993 * 125.00108 * 10 9 8 12 12 H 1.08995 * 111.01541 * 59.27579 * 11 10 9 13 13 C 1.55481 * 111.15262 * 183.60632 * 11 10 9 14 14 C 1.53780 * 107.96263 * 158.80822 * 13 11 10 15 15 C 1.54703 * 109.78806 * 312.47525 * 14 13 11 16 16 S 1.83794 * 102.96648 * 28.08176 * 15 14 13 17 17 O 1.47151 * 112.17461 * 238.51217 * 16 15 14 18 18 O 1.47159 * 112.17175 * 115.78809 * 16 15 14 19 19 N 1.28719 * 108.26459 * 0.02562 * 9 8 7 20 20 N 1.28634 * 110.17554 * 359.97438 * 19 9 8 21 21 H 1.09001 * 109.47589 * 239.99806 * 2 1 3 22 22 H 1.08003 * 126.90812 * 0.08839 * 8 7 2 23 23 H 1.08997 * 109.47010 * 245.00154 * 10 9 8 24 24 H 1.08996 * 109.46830 * 5.00379 * 10 9 8 25 25 H 1.09003 * 109.76432 * 278.43156 * 13 11 10 26 26 H 1.08998 * 109.77594 * 39.17757 * 13 11 10 27 27 H 1.09004 * 109.41985 * 192.38276 * 14 13 11 28 28 H 1.08992 * 109.37823 * 72.54439 * 14 13 11 29 29 H 1.09009 * 110.71644 * 269.71227 * 15 14 13 30 30 H 1.08994 * 110.86883 * 146.52574 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 3.5350 1.7565 0.0006 5 1 1.5549 2.4565 -1.2126 6 1 1.5549 2.4565 1.2124 7 6 1.9313 -0.7104 1.2305 8 6 1.3156 -1.7180 1.8920 9 7 2.1260 -2.0403 2.9266 10 6 1.8717 -3.0833 3.9235 11 6 3.0560 -4.0514 3.9621 12 1 3.9792 -3.5297 4.2145 13 6 2.7880 -5.2268 4.9438 14 6 3.7135 -6.3913 4.5534 15 6 3.6423 -6.6274 3.0261 16 16 3.2215 -4.9627 2.3706 17 8 1.9671 -4.9695 1.6014 18 8 4.2920 -4.4123 1.5241 19 7 3.1586 -1.2730 2.8844 20 7 3.0729 -0.4685 1.8843 21 1 1.7924 -0.5139 -0.8899 22 1 0.3686 -2.1738 1.6434 23 1 1.7447 -2.6252 4.9043 24 1 0.9660 -3.6278 3.6567 25 1 3.0035 -4.9110 5.9646 26 1 1.7473 -5.5414 4.8671 27 1 3.3985 -7.2951 5.0748 28 1 4.7381 -6.1490 4.8351 29 1 2.8599 -7.3465 2.7832 30 1 4.6049 -6.9620 2.6397 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-3 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725689352.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 17:45:18 Heat of formation + Delta-G solvation = -5.611310 kcal Electronic energy + Delta-G solvation = -18183.413302 eV Core-core repulsion = 15109.897157 eV Total energy + Delta-G solvation = -3073.516144 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.066 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.70240 -31.66265 -30.04423 -28.78913 -27.38260 -27.08296 -25.80711 -25.47107 -21.89566 -20.46478 -18.67625 -17.08128 -16.36652 -15.67466 -12.74516 -12.14485 -11.43451 -11.20930 -10.58213 -10.30016 -10.25741 -9.96879 -9.19579 -9.01050 -8.45997 -8.28385 -7.83222 -7.72949 -7.58600 -7.54745 -7.28264 -6.91148 -6.81777 -6.63956 -6.49986 -6.36698 -6.19830 -5.49747 -4.63130 -4.01323 -3.86567 -3.42150 -3.39273 -2.91399 -2.75769 1.29828 5.52682 5.74484 5.94330 6.11380 6.81894 6.93304 7.33345 8.82925 8.94992 8.99605 9.14510 9.25311 9.32475 9.49102 9.58866 9.83417 9.97773 10.03699 10.09627 10.24151 10.30472 10.34776 10.55079 10.71153 10.76579 10.85538 11.01867 11.18870 11.81514 11.87869 12.54983 12.94974 Molecular weight = 260.07amu Principal moments of inertia in cm(-1) A = 0.039627 B = 0.006730 C = 0.006551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.419521 B = 4159.189878 C = 4273.033284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.886 6.886 2 C 0.077 3.923 3 Si 0.924 3.076 4 H -0.294 1.294 5 H -0.307 1.307 6 H -0.294 1.294 7 C -0.038 4.038 8 C -0.014 4.014 9 N -0.262 5.262 10 C 0.183 3.817 11 C -0.569 4.569 12 H 0.046 0.954 13 C -0.041 4.041 14 C -0.036 4.036 15 C -0.610 4.610 16 S 1.575 4.425 17 O -1.128 7.128 18 O -1.127 7.127 19 N -0.114 5.114 20 N -0.330 5.330 21 H -0.017 1.017 22 H 0.166 0.834 23 H 0.012 0.988 24 H 0.070 0.930 25 H -0.016 1.016 26 H 0.024 0.976 27 H -0.023 1.023 28 H 0.014 0.986 29 H 0.010 0.990 30 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.011 3.147 9.180 9.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.833 6.833 2 C -0.045 4.045 3 Si 0.759 3.241 4 H -0.222 1.222 5 H -0.236 1.236 6 H -0.221 1.221 7 C -0.177 4.177 8 C -0.165 4.165 9 N -0.057 5.057 10 C 0.062 3.938 11 C -0.644 4.644 12 H 0.065 0.935 13 C -0.081 4.081 14 C -0.075 4.075 15 C -0.706 4.706 16 S 1.692 4.308 17 O -1.126 7.126 18 O -1.125 7.125 19 N -0.093 5.093 20 N -0.199 5.199 21 H 0.000 1.000 22 H 0.183 0.817 23 H 0.030 0.970 24 H 0.088 0.912 25 H 0.002 0.998 26 H 0.043 0.957 27 H -0.005 1.005 28 H 0.033 0.967 29 H 0.028 0.972 30 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 1.299 4.510 9.299 10.416 hybrid contribution -0.935 -1.066 -0.381 1.468 sum 0.364 3.443 8.918 9.567 Atomic orbital electron populations 1.94773 1.03835 1.91253 1.93414 1.21834 0.98527 0.96596 0.87494 0.86504 0.74790 0.88041 0.74812 1.22164 1.23561 1.22074 1.23852 0.91556 0.99777 1.02511 1.22940 1.00154 1.00763 0.92636 1.47650 1.12671 1.24255 1.21163 1.21021 1.01848 0.85700 0.85194 1.28356 0.92297 0.97731 1.46042 0.93550 1.21044 0.96509 0.96840 0.93756 1.20865 0.95458 0.92674 0.98509 1.28426 0.97026 1.40373 1.04783 1.82953 0.75654 0.79203 0.92994 1.92964 1.53793 1.86341 1.79482 1.92962 1.63325 1.79586 1.76659 1.77648 1.09419 1.03582 1.18700 1.74443 1.19110 1.21390 1.04931 1.00017 0.81706 0.97009 0.91166 0.99778 0.95684 1.00515 0.96713 0.97154 0.97518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.89 -56.99 17.69 -35.23 -0.62 -57.62 16 2 C 0.08 4.71 3.15 36.01 0.11 4.82 16 3 Si 0.92 48.89 27.87 -169.99 -4.74 44.15 16 4 H -0.29 -15.14 7.11 56.52 0.40 -14.74 16 5 H -0.31 -15.22 7.11 56.52 0.40 -14.81 16 6 H -0.29 -15.45 7.11 56.52 0.40 -15.05 16 7 C -0.04 -2.43 6.19 -82.78 -0.51 -2.94 16 8 C -0.01 -0.88 11.10 -17.05 -0.19 -1.07 16 9 N -0.26 -16.33 3.24 -61.26 -0.20 -16.53 16 10 C 0.18 10.75 5.76 -4.04 -0.02 10.72 16 11 C -0.57 -34.74 3.41 -25.41 -0.09 -34.83 16 12 H 0.05 2.87 8.14 -51.93 -0.42 2.45 16 13 C -0.04 -2.25 5.86 -25.01 -0.15 -2.39 16 14 C -0.04 -1.97 6.35 -25.43 -0.16 -2.13 16 15 C -0.61 -37.53 7.51 38.05 0.29 -37.24 16 16 S 1.57 107.92 5.72 -107.50 -0.62 107.31 16 17 O -1.13 -82.02 18.01 -58.50 -1.05 -83.07 16 18 O -1.13 -84.08 18.53 -58.50 -1.08 -85.17 16 19 N -0.11 -7.11 12.93 60.35 0.78 -6.33 16 20 N -0.33 -20.46 11.16 33.29 0.37 -20.09 16 21 H -0.02 -1.04 7.96 -51.93 -0.41 -1.45 16 22 H 0.17 10.42 8.06 -52.48 -0.42 9.99 16 23 H 0.01 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.07 4.11 7.90 -51.93 -0.41 3.70 16 25 H -0.02 -0.81 8.14 -51.93 -0.42 -1.23 16 26 H 0.02 1.31 8.06 -51.93 -0.42 0.90 16 27 H -0.02 -1.18 8.14 -51.93 -0.42 -1.61 16 28 H 0.01 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.01 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 274.76 15.07 4.14 4.14 Total: -3.00 -202.29 274.76 -7.16 -209.45 By element: Atomic # 1 Polarization: -27.76 SS G_CDS: -3.42 Total: -31.18 kcal Atomic # 6 Polarization: -64.35 SS G_CDS: -0.72 Total: -65.07 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.95 Total: -42.94 kcal Atomic # 8 Polarization: -223.09 SS G_CDS: -2.76 Total: -225.85 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: -4.74 Total: 44.15 kcal Atomic # 16 Polarization: 107.92 SS G_CDS: -0.62 Total: 107.31 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -202.29 -7.16 -209.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725689352.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.834 kcal (2) G-P(sol) polarization free energy of solvation -202.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -209.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds