Wall clock time and date at job start Tue Mar 17 2020 17:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -3 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86301 * 109.47119 * 2 1 4 4 H 1.48501 * 109.47272 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47064 * 299.99964 * 3 2 1 6 6 H 1.48501 * 109.47122 * 59.99442 * 3 2 1 7 7 C 1.50700 * 109.47008 * 119.99844 * 2 1 3 8 8 C 1.35350 * 126.75528 * 29.98015 * 7 2 1 9 9 N 1.35307 * 106.17738 * 180.02562 * 8 7 2 10 10 C 1.46504 * 125.86774 * 180.02562 * 9 8 7 11 11 C 1.53007 * 109.46993 * 125.00108 * 10 9 8 12 12 H 1.08995 * 111.01541 * 59.27579 * 11 10 9 13 13 C 1.55481 * 111.15262 * 183.60632 * 11 10 9 14 14 C 1.53780 * 107.96263 * 158.80822 * 13 11 10 15 15 C 1.54703 * 109.78806 * 312.47525 * 14 13 11 16 16 S 1.83794 * 102.96648 * 28.08176 * 15 14 13 17 17 O 1.47151 * 112.17461 * 238.51217 * 16 15 14 18 18 O 1.47159 * 112.17175 * 115.78809 * 16 15 14 19 19 N 1.28719 * 108.26459 * 0.02562 * 9 8 7 20 20 N 1.28634 * 110.17554 * 359.97438 * 19 9 8 21 21 H 1.09001 * 109.47589 * 239.99806 * 2 1 3 22 22 H 1.08003 * 126.90812 * 0.08839 * 8 7 2 23 23 H 1.08997 * 109.47010 * 245.00154 * 10 9 8 24 24 H 1.08996 * 109.46830 * 5.00379 * 10 9 8 25 25 H 1.09003 * 109.76432 * 278.43156 * 13 11 10 26 26 H 1.08998 * 109.77594 * 39.17757 * 13 11 10 27 27 H 1.09004 * 109.41985 * 192.38276 * 14 13 11 28 28 H 1.08992 * 109.37823 * 72.54439 * 14 13 11 29 29 H 1.09009 * 110.71644 * 269.71227 * 15 14 13 30 30 H 1.08994 * 110.86883 * 146.52574 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 3.5350 1.7565 0.0006 5 1 1.5549 2.4565 -1.2126 6 1 1.5549 2.4565 1.2124 7 6 1.9313 -0.7104 1.2305 8 6 1.3156 -1.7180 1.8920 9 7 2.1260 -2.0403 2.9266 10 6 1.8717 -3.0833 3.9235 11 6 3.0560 -4.0514 3.9621 12 1 3.9792 -3.5297 4.2145 13 6 2.7880 -5.2268 4.9438 14 6 3.7135 -6.3913 4.5534 15 6 3.6423 -6.6274 3.0261 16 16 3.2215 -4.9627 2.3706 17 8 1.9671 -4.9695 1.6014 18 8 4.2920 -4.4123 1.5241 19 7 3.1586 -1.2730 2.8844 20 7 3.0729 -0.4685 1.8843 21 1 1.7924 -0.5139 -0.8899 22 1 0.3686 -2.1738 1.6434 23 1 1.7447 -2.6252 4.9043 24 1 0.9660 -3.6278 3.6567 25 1 3.0035 -4.9110 5.9646 26 1 1.7473 -5.5414 4.8671 27 1 3.3985 -7.2951 5.0748 28 1 4.7381 -6.1490 4.8351 29 1 2.8599 -7.3465 2.7832 30 1 4.6049 -6.9620 2.6397 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-3 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725689352.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 17:45:17 Heat of formation + Delta-G solvation = -192.212237 kcal Electronic energy + Delta-G solvation = -18191.504925 eV Core-core repulsion = 15109.897157 eV Total energy + Delta-G solvation = -3081.607768 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.066 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.64554 -36.37063 -34.76345 -33.63415 -32.97577 -32.60045 -30.71601 -30.31524 -26.61276 -25.34595 -23.47298 -21.99316 -21.03961 -20.41003 -17.62738 -17.00251 -16.14343 -15.79365 -15.65513 -15.15688 -14.96351 -14.67423 -13.97493 -13.71981 -13.53057 -13.04167 -12.84388 -12.50485 -12.21084 -11.93366 -11.84641 -11.77047 -11.47738 -11.39662 -11.28070 -11.14326 -10.80818 -10.34349 -9.73841 -9.60932 -9.53889 -8.70224 -8.34393 -8.10320 -7.62721 -3.95648 1.09934 1.32503 1.65775 1.87650 1.95981 2.15916 2.79903 3.98932 4.17266 4.36784 4.58630 4.63486 4.67851 4.94765 5.08229 5.14532 5.17195 5.32599 5.35561 5.37849 5.52839 5.62808 5.73206 5.86739 5.96082 6.14107 6.20965 6.37812 6.54511 6.58925 7.73414 7.99201 Molecular weight = 260.07amu Principal moments of inertia in cm(-1) A = 0.039627 B = 0.006730 C = 0.006551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.419521 B = 4159.189878 C = 4273.033284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.940 6.940 2 C -0.022 4.022 3 Si 1.050 2.950 4 H -0.272 1.272 5 H -0.246 1.246 6 H -0.283 1.283 7 C -0.052 4.052 8 C -0.053 4.053 9 N -0.261 5.261 10 C 0.172 3.828 11 C -0.591 4.591 12 H 0.031 0.969 13 C -0.034 4.034 14 C -0.036 4.036 15 C -0.630 4.630 16 S 1.560 4.440 17 O -1.183 7.183 18 O -1.197 7.197 19 N -0.112 5.112 20 N -0.324 5.324 21 H -0.052 1.052 22 H 0.152 0.848 23 H 0.084 0.916 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.037 0.963 27 H 0.044 0.956 28 H 0.034 0.966 29 H 0.008 0.992 30 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.783 4.835 12.352 13.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.889 6.889 2 C -0.136 4.136 3 Si 0.872 3.128 4 H -0.198 1.198 5 H -0.170 1.170 6 H -0.209 1.209 7 C -0.191 4.191 8 C -0.204 4.204 9 N -0.057 5.057 10 C 0.053 3.947 11 C -0.673 4.673 12 H 0.050 0.950 13 C -0.074 4.074 14 C -0.074 4.074 15 C -0.732 4.732 16 S 1.688 4.312 17 O -1.181 7.181 18 O -1.195 7.195 19 N -0.092 5.092 20 N -0.193 5.193 21 H -0.035 1.035 22 H 0.170 0.830 23 H 0.102 0.898 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.027 0.973 30 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges 2.052 6.177 12.405 14.009 hybrid contribution -1.151 -1.871 -1.159 2.484 sum 0.901 4.306 11.246 12.076 Atomic orbital electron populations 1.94695 1.06414 1.94441 1.93319 1.23831 0.97839 1.06738 0.85218 0.84676 0.75093 0.75185 0.77852 1.19847 1.17027 1.20901 1.24550 0.91659 0.99623 1.03223 1.23073 1.00912 1.01919 0.94489 1.47861 1.12031 1.24564 1.21242 1.21442 1.00806 0.85484 0.86934 1.28545 0.92713 1.01333 1.44725 0.95032 1.21082 0.97443 0.93688 0.95199 1.20894 0.97317 0.95854 0.93374 1.28622 0.96501 1.38837 1.09239 1.84526 0.73461 0.81900 0.91352 1.92903 1.56402 1.88366 1.80409 1.92886 1.65915 1.82515 1.78223 1.77527 1.09116 1.03610 1.18917 1.74388 1.18433 1.21593 1.04893 1.03536 0.83014 0.89836 0.91767 0.92543 0.94405 0.93756 0.94770 0.97305 0.98448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.94 -121.19 17.69 -148.98 -2.64 -123.83 16 2 C -0.02 -2.66 3.15 71.24 0.22 -2.44 16 3 Si 1.05 103.87 27.87 68.60 1.91 105.78 16 4 H -0.27 -25.82 7.11 99.48 0.71 -25.11 16 5 H -0.25 -21.88 7.11 99.48 0.71 -21.17 16 6 H -0.28 -27.48 7.11 99.48 0.71 -26.77 16 7 C -0.05 -6.55 6.19 41.60 0.26 -6.29 16 8 C -0.05 -6.75 11.10 83.49 0.93 -5.82 16 9 N -0.26 -31.93 3.24 -347.72 -1.13 -33.06 16 10 C 0.17 19.50 5.76 86.38 0.50 19.99 16 11 C -0.59 -69.35 3.41 31.45 0.11 -69.25 16 12 H 0.03 3.74 8.14 -2.39 -0.02 3.72 16 13 C -0.03 -3.48 5.86 31.71 0.19 -3.29 16 14 C -0.04 -3.64 6.35 31.44 0.20 -3.44 16 15 C -0.63 -75.24 7.51 72.56 0.55 -74.70 16 16 S 1.56 211.66 5.72 -56.49 -0.32 211.33 16 17 O -1.18 -172.61 18.01 -126.73 -2.28 -174.89 16 18 O -1.20 -179.25 18.53 -126.73 -2.35 -181.59 16 19 N -0.11 -13.67 12.93 37.02 0.48 -13.19 16 20 N -0.32 -39.46 11.16 -48.60 -0.54 -40.00 16 21 H -0.05 -6.47 7.96 -2.39 -0.02 -6.49 16 22 H 0.15 19.54 8.06 -2.91 -0.02 19.51 16 23 H 0.08 8.39 8.14 -2.39 -0.02 8.37 16 24 H 0.06 7.31 7.90 -2.39 -0.02 7.29 16 25 H 0.06 5.02 8.14 -2.39 -0.02 5.00 16 26 H 0.04 3.70 8.06 -2.39 -0.02 3.68 16 27 H 0.04 4.00 8.14 -2.38 -0.02 3.98 16 28 H 0.03 3.31 8.14 -2.39 -0.02 3.29 16 29 H 0.01 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.00 -0.42 8.14 -2.39 -0.02 -0.44 16 Total: -3.00 -416.85 274.76 -2.02 -418.87 By element: Atomic # 1 Polarization: -26.09 SS G_CDS: 1.90 Total: -24.19 kcal Atomic # 6 Polarization: -148.17 SS G_CDS: 2.94 Total: -145.23 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -1.19 Total: -86.24 kcal Atomic # 8 Polarization: -473.05 SS G_CDS: -7.26 Total: -480.32 kcal Atomic # 14 Polarization: 103.87 SS G_CDS: 1.91 Total: 105.78 kcal Atomic # 16 Polarization: 211.66 SS G_CDS: -0.32 Total: 211.33 kcal Total: -416.85 -2.02 -418.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725689352.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.653 kcal (2) G-P(sol) polarization free energy of solvation -416.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -418.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds