Wall clock time and date at job start Tue Mar 17 2020 17:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86299 * 109.47007 * 2 1 4 4 H 1.48502 * 109.46745 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47035 * 299.99930 * 3 2 1 6 6 H 1.48495 * 109.47146 * 60.00415 * 3 2 1 7 7 C 1.50700 * 109.46788 * 120.00049 * 2 1 3 8 8 C 1.31164 * 125.10271 * 120.00213 * 7 2 1 9 9 C 1.49000 * 116.92047 * 179.97438 * 8 7 2 10 10 C 1.50853 * 111.42007 * 0.02562 * 9 8 7 11 11 S 1.76449 * 125.10755 * 300.30132 * 7 2 1 12 12 N 1.39498 * 127.51945 * 179.97438 * 10 9 8 13 13 C 1.46926 * 120.62737 * 180.02562 * 12 10 9 14 14 C 1.53191 * 108.89109 * 126.46680 * 13 12 10 15 15 C 1.53044 * 109.31440 * 54.56430 * 14 13 12 16 16 H 1.08994 * 109.45986 * 58.65006 * 15 14 13 17 17 O 1.42899 * 109.45846 * 178.62729 * 15 14 13 18 18 C 1.53040 * 109.53662 * 298.63203 * 15 14 13 19 19 H 1.08996 * 109.49892 * 301.41776 * 18 15 14 20 20 F 1.39896 * 109.49880 * 181.31368 * 18 15 14 21 21 C 1.46957 * 120.65456 * 359.81985 * 12 10 9 22 22 H 1.09000 * 109.46623 * 239.99632 * 2 1 3 23 23 H 1.07994 * 121.53955 * 359.97438 * 8 7 2 24 24 H 1.08995 * 109.09839 * 239.48173 * 9 8 7 25 25 H 1.09004 * 109.00822 * 120.46284 * 9 8 7 26 26 H 1.09002 * 109.58861 * 6.60683 * 13 12 10 27 27 H 1.08996 * 109.58519 * 246.32574 * 13 12 10 28 28 H 1.09003 * 109.49294 * 174.51508 * 14 13 12 29 29 H 1.08997 * 109.50161 * 294.61021 * 14 13 12 30 30 H 0.96704 * 113.99705 * 179.97438 * 17 15 14 31 31 H 1.09001 * 109.46843 * 113.75036 * 21 12 10 32 32 H 1.08998 * 109.59977 * 353.39252 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 3.5350 1.7564 -0.0006 5 1 1.5549 2.4565 -1.2125 6 1 1.5550 2.4564 1.2125 7 6 1.9313 -0.7104 1.2305 8 6 2.6885 -1.7814 1.2268 9 6 3.0806 -2.3349 2.5535 10 6 2.5033 -1.5189 3.6833 11 16 1.5828 -0.2309 2.8924 12 7 2.6566 -1.7360 5.0527 13 6 2.0217 -0.8394 6.0284 14 6 1.1864 -1.6772 7.0016 15 6 2.0705 -2.7597 7.6253 16 1 2.9080 -2.2913 8.1421 17 8 1.3022 -3.5229 8.5576 18 6 2.6015 -3.6828 6.5262 19 1 1.7641 -4.1324 5.9926 20 9 3.3850 -4.6896 7.1001 21 6 3.4523 -2.8681 5.5475 22 1 1.7922 -0.5139 -0.8900 23 1 3.0129 -2.2407 0.3048 24 1 4.1676 -2.3354 2.6325 25 1 2.7172 -3.3596 2.6320 26 1 1.3761 -0.1317 5.5083 27 1 2.7896 -0.2966 6.5795 28 1 0.7898 -1.0341 7.7873 29 1 0.3623 -2.1458 6.4637 30 1 1.7997 -4.2293 8.9921 31 1 4.3387 -2.4931 6.0591 32 1 3.7506 -3.4989 4.7101 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725689845.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 17:45:13 Heat of formation + Delta-G solvation = -191.292495 kcal Electronic energy + Delta-G solvation = -17828.354324 eV Core-core repulsion = 14713.210738 eV Total energy + Delta-G solvation = -3115.143586 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.075 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.72706 -39.28440 -36.97637 -36.28663 -33.09538 -31.74580 -31.10343 -28.39941 -25.10311 -24.11203 -23.24524 -22.13289 -20.94717 -19.32298 -18.53717 -17.27758 -16.81869 -16.40562 -16.12444 -15.73729 -15.36917 -14.99677 -14.71053 -14.34600 -14.00338 -13.81300 -13.66083 -13.64569 -13.16825 -12.82388 -12.63649 -12.33320 -12.22241 -11.99890 -11.86271 -11.62637 -11.54273 -11.30530 -10.78346 -10.21574 -9.91338 -9.39833 -8.24246 -7.73757 -7.59415 -4.61927 1.29218 1.49083 1.63401 1.84145 2.00913 2.77701 3.09874 3.16635 3.37947 3.64625 3.75515 3.85749 3.88285 4.24326 4.43536 4.70558 4.78432 4.83505 4.86480 4.89577 5.03975 5.06973 5.14650 5.29070 5.36844 5.37532 5.43933 6.04222 6.28635 6.51231 6.73431 7.64939 7.85725 8.43128 Molecular weight = 261.07amu Principal moments of inertia in cm(-1) A = 0.039374 B = 0.005573 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.966380 B = 5023.445641 C = 5324.193649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.942 6.942 2 C -0.008 4.008 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.259 1.259 6 H -0.287 1.287 7 C -0.103 4.103 8 C -0.285 4.285 9 C 0.110 3.890 10 C -0.591 4.591 11 S -0.132 6.132 12 N -0.581 5.581 13 C 0.162 3.838 14 C -0.119 4.119 15 C 0.111 3.889 16 H 0.085 0.915 17 O -0.569 6.569 18 C 0.047 3.953 19 H 0.061 0.939 20 F -0.213 7.213 21 C 0.154 3.846 22 H -0.033 1.033 23 H 0.100 0.900 24 H -0.042 1.042 25 H -0.065 1.065 26 H 0.036 0.964 27 H 0.042 0.958 28 H 0.099 0.901 29 H 0.040 0.960 30 H 0.393 0.607 31 H 0.044 0.956 32 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.964 -4.697 19.333 21.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.892 6.892 2 C -0.125 4.125 3 Si 0.797 3.203 4 H -0.193 1.193 5 H -0.184 1.184 6 H -0.213 1.213 7 C -0.219 4.219 8 C -0.319 4.319 9 C 0.072 3.928 10 C -0.789 4.789 11 S 0.116 5.884 12 N -0.306 5.306 13 C 0.036 3.964 14 C -0.159 4.159 15 C 0.052 3.948 16 H 0.103 0.897 17 O -0.377 6.377 18 C 0.008 3.992 19 H 0.079 0.921 20 F -0.194 7.194 21 C 0.024 3.976 22 H -0.016 1.016 23 H 0.118 0.882 24 H -0.025 1.025 25 H -0.048 1.048 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.118 0.882 29 H 0.059 0.941 30 H 0.243 0.757 31 H 0.061 0.939 32 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.815 -2.422 19.657 20.945 hybrid contribution 0.867 -2.521 -0.963 2.835 sum 7.682 -4.943 18.694 20.806 Atomic orbital electron populations 1.94773 1.06977 1.93653 1.93829 1.23330 0.97556 1.03611 0.87954 0.85786 0.75680 0.80807 0.77999 1.19335 1.18417 1.21265 1.25306 0.97499 1.00155 0.98921 1.22370 1.09712 1.01787 0.98022 1.17224 0.92901 0.92783 0.89925 1.20369 1.51701 1.22617 0.84164 1.81468 1.65750 1.41039 1.00184 1.43243 1.59821 1.28422 0.99130 1.20787 0.94382 0.91850 0.89368 1.22003 0.98194 0.97057 0.98599 1.22022 0.94166 0.90721 0.87879 0.89698 1.86460 1.42235 1.50586 1.58419 1.23005 0.93508 0.86930 0.95793 0.92076 1.92705 1.77288 1.63099 1.86276 1.21094 0.92925 0.88726 0.94810 1.01620 0.88203 1.02531 1.04781 0.94579 0.94077 0.88223 0.94075 0.75684 0.93885 0.94195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.94 -103.50 18.01 -148.98 -2.68 -106.18 16 2 C -0.01 -0.77 3.07 71.24 0.22 -0.55 16 3 Si 0.97 79.52 28.05 68.60 1.92 81.44 16 4 H -0.27 -20.09 7.11 99.48 0.71 -19.38 16 5 H -0.26 -19.50 7.11 99.48 0.71 -18.79 16 6 H -0.29 -24.17 7.11 99.48 0.71 -23.46 16 7 C -0.10 -10.06 4.82 25.48 0.12 -9.94 16 8 C -0.28 -26.78 10.18 24.96 0.25 -26.52 16 9 C 0.11 10.14 5.10 28.62 0.15 10.28 16 10 C -0.59 -53.92 7.70 86.94 0.67 -53.25 16 11 S -0.13 -12.63 20.82 -56.49 -1.18 -13.80 16 12 N -0.58 -45.50 3.11 -679.21 -2.11 -47.62 16 13 C 0.16 11.17 6.51 86.36 0.56 11.73 16 14 C -0.12 -7.05 5.73 30.67 0.18 -6.87 16 15 C 0.11 5.91 3.22 30.62 0.10 6.01 16 16 H 0.09 4.12 8.14 -2.39 -0.02 4.10 16 17 O -0.57 -27.16 13.32 -148.98 -1.98 -29.15 16 18 C 0.05 2.78 3.70 30.66 0.11 2.89 16 19 H 0.06 3.94 8.14 -2.39 -0.02 3.93 16 20 F -0.21 -11.35 16.66 44.97 0.75 -10.60 16 21 C 0.15 10.55 6.24 86.34 0.54 11.09 16 22 H -0.03 -3.15 7.90 -2.39 -0.02 -3.17 16 23 H 0.10 8.80 8.06 -2.91 -0.02 8.78 16 24 H -0.04 -3.83 8.14 -2.39 -0.02 -3.85 16 25 H -0.06 -6.05 8.09 -2.39 -0.02 -6.07 16 26 H 0.04 2.71 6.77 -2.39 -0.02 2.69 16 27 H 0.04 2.62 8.14 -2.39 -0.02 2.60 16 28 H 0.10 5.16 8.14 -2.39 -0.02 5.14 16 29 H 0.04 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.39 15.12 8.69 -74.05 -0.64 14.47 16 31 H 0.04 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.04 2.91 6.95 -2.39 -0.02 2.90 16 Total: -2.00 -204.64 281.00 -1.14 -205.78 By element: Atomic # 1 Polarization: -26.00 SS G_CDS: 1.25 Total: -24.76 kcal Atomic # 6 Polarization: -58.02 SS G_CDS: 2.90 Total: -55.12 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -2.11 Total: -47.62 kcal Atomic # 8 Polarization: -130.66 SS G_CDS: -4.67 Total: -135.33 kcal Atomic # 9 Polarization: -11.35 SS G_CDS: 0.75 Total: -10.60 kcal Atomic # 14 Polarization: 79.52 SS G_CDS: 1.92 Total: 81.44 kcal Atomic # 16 Polarization: -12.63 SS G_CDS: -1.18 Total: -13.80 kcal Total: -204.64 -1.14 -205.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725689845.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.483 kcal (2) G-P(sol) polarization free energy of solvation -204.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -205.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds