Wall clock time and date at job start Tue Mar 17 2020 18:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47020 * 2 1 4 4 H 1.08995 * 109.58360 * 54.72512 * 3 2 1 5 5 C 1.53230 * 109.58514 * 175.00494 * 3 2 1 6 6 N 1.46381 * 109.48903 * 177.58636 * 5 3 2 7 7 C 1.46371 * 120.70715 * 295.18323 * 6 5 3 8 8 C 1.52728 * 109.77144 * 64.81004 * 7 6 5 9 9 S 1.81745 * 108.84047 * 302.52429 * 8 7 6 10 10 C 1.39497 * 119.64769 * 114.91084 * 6 5 3 11 11 C 1.50852 * 127.52409 * 180.02562 * 10 6 5 12 12 C 1.49006 * 111.33325 * 179.97438 * 11 10 6 13 13 C 1.31154 * 116.92056 * 0.05333 * 12 11 10 14 14 S 1.76451 * 109.79305 * 0.02562 * 13 12 11 15 15 C 1.50704 * 125.09977 * 179.97438 * 13 12 11 16 16 O 1.42891 * 109.47276 * 239.99929 * 15 13 12 17 17 Si 1.86302 * 109.46754 * 120.00336 * 15 13 12 18 18 H 1.48504 * 109.46989 * 59.99819 * 17 15 13 19 19 H 1.48492 * 109.47438 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.47215 * 300.00210 * 17 15 13 21 21 H 1.09000 * 109.46641 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46659 * 299.99512 * 1 2 3 23 23 H 1.08993 * 109.47516 * 59.99884 * 1 2 3 24 24 H 1.09000 * 109.47367 * 240.00278 * 2 1 3 25 25 H 1.08996 * 109.47713 * 119.99633 * 2 1 3 26 26 H 1.08996 * 109.47328 * 57.58010 * 5 3 2 27 27 H 1.09001 * 109.47117 * 297.58778 * 5 3 2 28 28 H 1.08996 * 109.47118 * 184.81878 * 7 6 5 29 29 H 1.09003 * 109.46986 * 304.81220 * 7 6 5 30 30 H 1.08999 * 109.65861 * 182.65788 * 8 7 6 31 31 H 1.09004 * 109.57861 * 62.34021 * 8 7 6 32 32 H 1.09002 * 109.09923 * 59.47921 * 11 10 6 33 33 H 1.08996 * 109.09815 * 300.40275 * 11 10 6 34 34 H 1.07999 * 121.53922 * 180.02562 * 12 11 10 35 35 H 1.08998 * 109.47353 * 0.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6026 1.9846 0.8384 5 6 3.5671 1.4474 0.1257 6 7 4.0575 2.8254 0.0676 7 6 3.8987 3.6247 -1.1483 8 6 2.4147 3.8629 -1.4198 9 16 1.5780 2.2554 -1.5585 10 6 4.6777 3.3848 1.1849 11 6 5.2442 4.7763 1.3210 12 6 5.8251 4.9950 2.6756 13 6 5.7641 3.9908 3.5171 14 16 4.9720 2.6143 2.7482 15 6 6.2925 4.0095 4.9283 16 8 7.2891 2.9964 5.0773 17 14 4.8961 3.6867 6.1185 18 1 4.2981 2.3581 5.8313 19 1 5.4164 3.7057 7.5091 20 1 3.8603 4.7396 5.9637 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 4.0009 0.8727 -0.6926 27 1 3.8548 0.9993 1.0768 28 1 4.4006 4.5838 -1.0207 29 1 4.3390 3.0937 -1.9922 30 1 2.2967 4.4177 -2.3506 31 1 1.9796 4.4315 -0.5979 32 1 4.4496 5.5030 1.1515 33 1 6.0232 4.9190 0.5721 34 1 6.2759 5.9368 2.9517 35 1 6.7311 4.9848 5.1392 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725570583.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 18:47:53 Heat of formation + Delta-G solvation = -12.374573 kcal Electronic energy + Delta-G solvation = -17139.904602 eV Core-core repulsion = 14470.506515 eV Total energy + Delta-G solvation = -2669.398087 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 273.072 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -35.27188 -33.26169 -32.50051 -29.13702 -28.76681 -26.69713 -24.46077 -22.07574 -20.74972 -19.90253 -19.24661 -17.85746 -15.94869 -14.80888 -13.85497 -13.20814 -13.12613 -12.50696 -12.33108 -12.11929 -11.51858 -11.35425 -11.31522 -10.80452 -10.56325 -10.43683 -10.11306 -9.98442 -9.83764 -9.58372 -9.34102 -9.19471 -8.84738 -8.68497 -8.55322 -8.03562 -7.95664 -7.65177 -6.59311 -6.27844 -6.18930 -5.87679 -4.21848 -4.08308 -3.65483 -1.05887 3.46650 4.17967 4.72018 4.92472 4.99725 5.51153 5.67759 6.03827 6.29564 6.35406 6.36296 6.42770 6.82533 6.89308 6.91876 6.96318 7.02513 7.14569 7.21564 7.24287 7.30707 7.41132 7.77431 7.79602 7.90888 8.03382 8.60787 8.78933 8.99914 9.12705 9.16017 9.73149 9.82887 10.19530 10.88945 11.67963 11.80977 Molecular weight = 273.07amu Principal moments of inertia in cm(-1) A = 0.024745 B = 0.005960 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.282934 B = 4696.923935 C = 5350.517124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 C -0.060 4.060 4 H 0.083 0.917 5 C 0.174 3.826 6 N -0.559 5.559 7 C 0.173 3.827 8 C -0.094 4.094 9 S -0.314 6.314 10 C -0.589 4.589 11 C 0.109 3.891 12 C -0.276 4.276 13 C -0.069 4.069 14 S -0.107 6.107 15 C 0.065 3.935 16 O -0.871 6.871 17 Si 0.877 3.123 18 H -0.271 1.271 19 H -0.298 1.298 20 H -0.306 1.306 21 H 0.045 0.955 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.022 0.978 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.020 0.980 30 H 0.081 0.919 31 H 0.075 0.925 32 H -0.049 1.049 33 H -0.048 1.048 34 H 0.080 0.920 35 H -0.026 1.026 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.297 -3.831 -12.955 20.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.140 4.140 3 C -0.191 4.191 4 H 0.101 0.899 5 C 0.044 3.956 6 N -0.279 5.279 7 C 0.041 3.959 8 C -0.245 4.245 9 S -0.089 6.089 10 C -0.785 4.785 11 C 0.070 3.930 12 C -0.310 4.310 13 C -0.185 4.185 14 S 0.140 5.860 15 C -0.056 4.056 16 O -0.819 6.819 17 Si 0.709 3.291 18 H -0.196 1.196 19 H -0.225 1.225 20 H -0.235 1.235 21 H 0.064 0.936 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.039 0.961 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.038 0.962 30 H 0.099 0.901 31 H 0.094 0.906 32 H -0.032 1.032 33 H -0.031 1.031 34 H 0.098 0.902 35 H -0.010 1.010 Dipole moment (debyes) X Y Z Total from point charges -16.664 -5.824 -12.730 21.764 hybrid contribution 0.933 2.225 0.210 2.422 sum -15.731 -3.599 -12.520 20.425 Atomic orbital electron populations 1.21785 0.96186 1.00393 1.02167 1.21324 0.95523 0.95096 1.02096 1.23949 1.04010 0.96564 0.94608 0.89871 1.20682 0.88028 0.87100 0.99755 1.43002 1.67389 1.07925 1.09570 1.20447 0.90378 0.96290 0.88743 1.24030 1.03426 0.93913 1.03143 1.85677 1.70090 1.20910 1.32230 1.20016 1.65445 0.98796 0.94275 1.17236 0.91304 0.93776 0.90674 1.21986 1.13013 0.98423 0.97572 1.25081 0.97438 0.94748 1.01237 1.81449 1.68327 1.23192 1.12985 1.22090 0.98249 0.95647 0.89569 1.94854 1.47183 1.49078 1.90739 0.87330 0.80326 0.79867 0.81560 1.19605 1.22529 1.23543 0.93558 0.92909 0.92204 0.91848 0.91009 0.96056 0.91111 0.91528 0.96218 0.90089 0.90590 1.03155 1.03089 0.90222 1.00972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.75 37.16 0.36 -3.19 16 2 C -0.10 -2.74 5.41 -26.73 -0.14 -2.88 16 3 C -0.06 -1.91 2.75 -26.61 -0.07 -1.98 16 4 H 0.08 2.88 8.14 -51.93 -0.42 2.46 16 5 C 0.17 6.36 5.59 -3.99 -0.02 6.34 16 6 N -0.56 -22.51 2.93 -167.24 -0.49 -23.00 16 7 C 0.17 6.17 6.26 -4.25 -0.03 6.14 16 8 C -0.09 -2.96 6.65 37.02 0.25 -2.71 16 9 S -0.31 -9.42 20.54 -107.50 -2.21 -11.63 16 10 C -0.59 -26.95 7.64 -8.71 -0.07 -27.02 16 11 C 0.11 4.99 4.99 -29.77 -0.15 4.85 16 12 C -0.28 -12.97 10.18 -36.87 -0.38 -13.34 16 13 C -0.07 -3.37 4.83 -36.06 -0.17 -3.55 16 14 S -0.11 -5.11 20.66 -107.50 -2.22 -7.33 16 15 C 0.07 3.18 3.07 36.01 0.11 3.29 16 16 O -0.87 -47.28 18.01 -35.23 -0.63 -47.91 16 17 Si 0.88 37.85 28.04 -169.99 -4.77 33.09 16 18 H -0.27 -11.93 7.11 56.52 0.40 -11.52 16 19 H -0.30 -12.20 7.11 56.52 0.40 -11.79 16 20 H -0.31 -12.60 7.11 56.52 0.40 -12.20 16 21 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 23 H 0.06 1.44 7.18 -51.93 -0.37 1.07 16 24 H 0.06 1.65 8.14 -51.93 -0.42 1.22 16 25 H 0.07 1.93 8.14 -51.93 -0.42 1.51 16 26 H 0.02 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 2.77 6.59 -51.93 -0.34 2.43 16 28 H 0.07 2.47 6.78 -51.93 -0.35 2.11 16 29 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.08 2.25 8.14 -51.93 -0.42 1.83 16 31 H 0.08 2.53 8.14 -51.93 -0.42 2.10 16 32 H -0.05 -2.21 8.14 -51.93 -0.42 -2.64 16 33 H -0.05 -2.22 8.07 -51.93 -0.42 -2.64 16 34 H 0.08 3.52 8.06 -52.49 -0.42 3.09 16 35 H -0.03 -1.25 7.90 -51.93 -0.41 -1.66 16 LS Contribution 304.61 15.07 4.59 4.59 Total: -2.00 -97.49 304.61 -11.38 -108.88 By element: Atomic # 1 Polarization: -17.29 SS G_CDS: -5.34 Total: -22.63 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: -0.31 Total: -34.05 kcal Atomic # 7 Polarization: -22.51 SS G_CDS: -0.49 Total: -23.00 kcal Atomic # 8 Polarization: -47.28 SS G_CDS: -0.63 Total: -47.91 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: -4.77 Total: 33.09 kcal Atomic # 16 Polarization: -14.53 SS G_CDS: -4.43 Total: -18.96 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -97.49 -11.38 -108.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725570583.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.503 kcal (2) G-P(sol) polarization free energy of solvation -97.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -108.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds