Wall clock time and date at job start Tue Mar 17 2020 18:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47020 * 2 1 4 4 H 1.08995 * 109.58360 * 54.72512 * 3 2 1 5 5 C 1.53230 * 109.58514 * 175.00494 * 3 2 1 6 6 N 1.46381 * 109.48903 * 177.58636 * 5 3 2 7 7 C 1.46371 * 120.70715 * 295.18323 * 6 5 3 8 8 C 1.52728 * 109.77144 * 64.81004 * 7 6 5 9 9 S 1.81745 * 108.84047 * 302.52429 * 8 7 6 10 10 C 1.39497 * 119.64769 * 114.91084 * 6 5 3 11 11 C 1.50852 * 127.52409 * 180.02562 * 10 6 5 12 12 C 1.49006 * 111.33325 * 179.97438 * 11 10 6 13 13 C 1.31154 * 116.92056 * 0.05333 * 12 11 10 14 14 S 1.76451 * 109.79305 * 0.02562 * 13 12 11 15 15 C 1.50704 * 125.09977 * 179.97438 * 13 12 11 16 16 O 1.42891 * 109.47276 * 239.99929 * 15 13 12 17 17 Si 1.86302 * 109.46754 * 120.00336 * 15 13 12 18 18 H 1.48504 * 109.46989 * 59.99819 * 17 15 13 19 19 H 1.48492 * 109.47438 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.47215 * 300.00210 * 17 15 13 21 21 H 1.09000 * 109.46641 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46659 * 299.99512 * 1 2 3 23 23 H 1.08993 * 109.47516 * 59.99884 * 1 2 3 24 24 H 1.09000 * 109.47367 * 240.00278 * 2 1 3 25 25 H 1.08996 * 109.47713 * 119.99633 * 2 1 3 26 26 H 1.08996 * 109.47328 * 57.58010 * 5 3 2 27 27 H 1.09001 * 109.47117 * 297.58778 * 5 3 2 28 28 H 1.08996 * 109.47118 * 184.81878 * 7 6 5 29 29 H 1.09003 * 109.46986 * 304.81220 * 7 6 5 30 30 H 1.08999 * 109.65861 * 182.65788 * 8 7 6 31 31 H 1.09004 * 109.57861 * 62.34021 * 8 7 6 32 32 H 1.09002 * 109.09923 * 59.47921 * 11 10 6 33 33 H 1.08996 * 109.09815 * 300.40275 * 11 10 6 34 34 H 1.07999 * 121.53922 * 180.02562 * 12 11 10 35 35 H 1.08998 * 109.47353 * 0.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6026 1.9846 0.8384 5 6 3.5671 1.4474 0.1257 6 7 4.0575 2.8254 0.0676 7 6 3.8987 3.6247 -1.1483 8 6 2.4147 3.8629 -1.4198 9 16 1.5780 2.2554 -1.5585 10 6 4.6777 3.3848 1.1849 11 6 5.2442 4.7763 1.3210 12 6 5.8251 4.9950 2.6756 13 6 5.7641 3.9908 3.5171 14 16 4.9720 2.6143 2.7482 15 6 6.2925 4.0095 4.9283 16 8 7.2891 2.9964 5.0773 17 14 4.8961 3.6867 6.1185 18 1 4.2981 2.3581 5.8313 19 1 5.4164 3.7057 7.5091 20 1 3.8603 4.7396 5.9637 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 4.0009 0.8727 -0.6926 27 1 3.8548 0.9993 1.0768 28 1 4.4006 4.5838 -1.0207 29 1 4.3390 3.0937 -1.9922 30 1 2.2967 4.4177 -2.3506 31 1 1.9796 4.4315 -0.5979 32 1 4.4496 5.5030 1.1515 33 1 6.0232 4.9190 0.5721 34 1 6.2759 5.9368 2.9517 35 1 6.7311 4.9848 5.1392 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725570583.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 18:47:52 Heat of formation + Delta-G solvation = -93.611176 kcal Electronic energy + Delta-G solvation = -17143.427285 eV Core-core repulsion = 14470.506515 eV Total energy + Delta-G solvation = -2672.920770 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 273.072 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -38.09753 -36.52000 -35.38672 -32.89401 -31.42934 -29.65414 -27.92164 -24.64390 -23.99598 -22.84712 -22.23170 -21.27913 -19.28784 -17.55281 -16.71155 -16.00452 -15.85775 -15.66383 -15.22998 -14.89591 -14.60536 -14.32364 -14.11227 -13.81994 -13.73215 -13.65256 -12.89682 -12.82595 -12.62796 -12.42050 -12.23289 -12.14272 -11.99888 -11.88900 -11.57650 -11.48384 -11.34047 -10.60368 -10.22773 -9.90653 -9.47710 -8.53665 -8.25867 -7.72983 -7.60910 -4.61455 0.98180 1.26006 1.46686 1.59686 1.64388 1.82529 2.01815 2.75088 3.23088 3.54975 3.90663 4.10128 4.19417 4.26517 4.32953 4.45484 4.56399 4.67675 4.81535 4.88467 4.92100 4.96641 5.03743 5.07830 5.08827 5.19123 5.29011 5.29779 5.35339 5.41797 5.42757 6.03690 6.30011 6.52702 7.71429 7.83811 8.43781 Molecular weight = 273.07amu Principal moments of inertia in cm(-1) A = 0.024745 B = 0.005960 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.282934 B = 4696.923935 C = 5350.517124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 C -0.060 4.060 4 H 0.050 0.950 5 C 0.174 3.826 6 N -0.588 5.588 7 C 0.171 3.829 8 C -0.094 4.094 9 S -0.246 6.246 10 C -0.593 4.593 11 C 0.113 3.887 12 C -0.285 4.285 13 C -0.104 4.104 14 S -0.135 6.135 15 C -0.005 4.005 16 O -0.941 6.941 17 Si 0.968 3.032 18 H -0.288 1.288 19 H -0.258 1.258 20 H -0.270 1.270 21 H 0.081 0.919 22 H 0.045 0.955 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.036 0.964 27 H 0.033 0.967 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.127 0.873 31 H 0.054 0.946 32 H -0.047 1.047 33 H -0.062 1.062 34 H 0.099 0.901 35 H -0.033 1.033 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.623 -4.304 -14.135 23.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.137 4.137 3 C -0.192 4.192 4 H 0.069 0.931 5 C 0.045 3.955 6 N -0.312 5.312 7 C 0.041 3.959 8 C -0.244 4.244 9 S -0.020 6.020 10 C -0.790 4.790 11 C 0.075 3.925 12 C -0.319 4.319 13 C -0.220 4.220 14 S 0.112 5.888 15 C -0.122 4.122 16 O -0.891 6.891 17 Si 0.795 3.205 18 H -0.214 1.214 19 H -0.182 1.182 20 H -0.196 1.196 21 H 0.100 0.900 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.098 0.902 25 H 0.087 0.913 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.145 0.855 31 H 0.073 0.927 32 H -0.030 1.030 33 H -0.045 1.045 34 H 0.117 0.883 35 H -0.016 1.016 Dipole moment (debyes) X Y Z Total from point charges -20.019 -6.273 -13.924 25.179 hybrid contribution 2.079 2.410 0.398 3.208 sum -17.940 -3.863 -13.526 22.797 Atomic orbital electron populations 1.21721 0.93352 1.02714 1.01913 1.21356 0.97893 0.91575 1.02834 1.23769 1.00007 0.99868 0.95548 0.93114 1.20753 0.91094 0.85307 0.98312 1.43189 1.69034 1.09594 1.09360 1.20582 0.93027 0.94844 0.87430 1.23877 0.99887 0.95961 1.04708 1.85424 1.68813 1.18493 1.29269 1.20382 1.65660 0.97909 0.95068 1.17186 0.91073 0.94398 0.89832 1.22372 1.12633 0.99191 0.97709 1.25287 0.98957 0.95593 1.02140 1.81448 1.68058 1.24176 1.15074 1.23281 1.01736 0.94488 0.92709 1.94771 1.50884 1.51070 1.92405 0.85834 0.76333 0.79046 0.79335 1.21382 1.18242 1.19613 0.90027 0.93572 0.91988 0.90172 0.91329 0.94618 0.94811 0.93863 0.94289 0.85494 0.92665 1.02955 1.04453 0.88270 1.01597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.04 9.75 71.98 0.70 -5.34 16 2 C -0.10 -4.91 5.41 30.60 0.17 -4.74 16 3 C -0.06 -3.70 2.75 30.67 0.08 -3.62 16 4 H 0.05 3.43 8.14 -2.39 -0.02 3.41 16 5 C 0.17 12.44 5.59 86.48 0.48 12.93 16 6 N -0.59 -46.75 2.93 -683.02 -2.00 -48.75 16 7 C 0.17 11.78 6.26 86.31 0.54 12.32 16 8 C -0.09 -5.53 6.65 71.89 0.48 -5.05 16 9 S -0.25 -13.57 20.54 -56.49 -1.16 -14.73 16 10 C -0.59 -54.31 7.64 86.94 0.66 -53.65 16 11 C 0.11 10.46 4.99 28.63 0.14 10.60 16 12 C -0.28 -26.85 10.18 24.97 0.25 -26.59 16 13 C -0.10 -10.19 4.83 25.49 0.12 -10.07 16 14 S -0.14 -13.01 20.66 -56.49 -1.17 -14.18 16 15 C -0.01 -0.53 3.07 71.24 0.22 -0.31 16 16 O -0.94 -103.62 18.01 -148.98 -2.68 -106.30 16 17 Si 0.97 79.91 28.04 68.60 1.92 81.83 16 18 H -0.29 -24.50 7.11 99.48 0.71 -23.79 16 19 H -0.26 -19.49 7.11 99.48 0.71 -18.78 16 20 H -0.27 -20.54 7.11 99.48 0.71 -19.83 16 21 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 22 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 23 H 0.06 2.65 7.18 -2.39 -0.02 2.63 16 24 H 0.08 3.78 8.14 -2.39 -0.02 3.76 16 25 H 0.07 3.50 8.14 -2.39 -0.02 3.48 16 26 H 0.04 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.03 2.63 6.59 -2.39 -0.02 2.62 16 28 H 0.04 3.14 6.78 -2.39 -0.02 3.12 16 29 H 0.04 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.13 6.36 8.14 -2.39 -0.02 6.34 16 31 H 0.05 3.50 8.14 -2.39 -0.02 3.48 16 32 H -0.05 -4.22 8.14 -2.39 -0.02 -4.24 16 33 H -0.06 -5.73 8.07 -2.39 -0.02 -5.75 16 34 H 0.10 8.76 8.06 -2.91 -0.02 8.74 16 35 H -0.03 -3.14 7.90 -2.39 -0.02 -3.16 16 Total: -2.00 -204.25 304.61 0.59 -203.67 By element: Atomic # 1 Polarization: -29.84 SS G_CDS: 1.82 Total: -28.02 kcal Atomic # 6 Polarization: -77.38 SS G_CDS: 3.86 Total: -73.52 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -2.00 Total: -48.75 kcal Atomic # 8 Polarization: -103.62 SS G_CDS: -2.68 Total: -106.30 kcal Atomic # 14 Polarization: 79.91 SS G_CDS: 1.92 Total: 81.83 kcal Atomic # 16 Polarization: -26.59 SS G_CDS: -2.33 Total: -28.91 kcal Total: -204.25 0.59 -203.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725570583.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.058 kcal (2) G-P(sol) polarization free energy of solvation -204.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -203.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds