Wall clock time and date at job start Tue Mar 17 2020 18:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81401 * 103.00219 * 2 1 4 4 C 1.53035 * 109.46197 * 174.99840 * 3 2 1 5 5 C 1.53191 * 109.31327 * 181.38899 * 4 3 2 6 6 N 1.46926 * 108.89109 * 305.29292 * 5 4 3 7 7 C 1.47207 * 118.55531 * 53.54119 * 6 5 4 8 8 C 1.53038 * 109.45868 * 295.07144 * 3 2 1 9 9 C 1.39497 * 120.63130 * 233.67248 * 6 5 4 10 10 C 1.50857 * 127.52164 * 179.70712 * 9 6 5 11 11 C 1.49003 * 111.41743 * 179.82192 * 10 9 6 12 12 C 1.31164 * 116.92121 * 0.50169 * 11 10 9 13 13 S 1.76454 * 109.78892 * 359.71369 * 12 11 10 14 14 C 1.50695 * 125.10072 * 179.71409 * 12 11 10 15 15 O 1.42899 * 109.47092 * 120.02828 * 14 12 11 16 16 Si 1.86309 * 109.46893 * 240.02172 * 14 12 11 17 17 H 1.48502 * 109.47049 * 60.00316 * 16 14 12 18 18 H 1.48502 * 109.47004 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47432 * 300.00500 * 16 14 12 20 20 H 1.08996 * 109.47353 * 299.99511 * 1 2 3 21 21 H 1.08996 * 109.47154 * 60.00373 * 1 2 3 22 22 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.44214 * 55.03630 * 3 2 1 24 24 H 1.09003 * 109.49576 * 61.43568 * 4 3 2 25 25 H 1.09004 * 109.49734 * 301.33937 * 4 3 2 26 26 H 1.09002 * 109.58786 * 65.15336 * 5 4 3 27 27 H 1.08996 * 109.58870 * 185.43616 * 5 4 3 28 28 H 1.08996 * 109.53610 * 186.67231 * 7 6 5 29 29 H 1.09002 * 109.68003 * 66.36699 * 7 6 5 30 30 H 1.09002 * 109.49557 * 298.56083 * 8 3 2 31 31 H 1.08996 * 109.50003 * 58.65980 * 8 3 2 32 32 H 1.08994 * 109.09526 * 300.51950 * 10 9 6 33 33 H 1.08998 * 109.09737 * 59.48577 * 10 9 6 34 34 H 1.07992 * 121.53988 * 180.21328 * 11 10 9 35 35 H 1.09000 * 109.47580 * 0.02562 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7374 1.9409 0.1258 5 6 4.0753 3.4347 0.1604 6 7 3.4929 4.0817 -1.0233 7 6 2.0563 3.9009 -1.2887 8 6 1.7410 2.4018 -1.3070 9 6 4.2864 4.8479 -1.8772 10 6 3.8562 5.5707 -3.1294 11 6 4.9988 6.2852 -3.7651 12 6 6.1664 6.1796 -3.1769 13 16 6.0191 5.1776 -1.7320 14 6 7.4421 6.8183 -3.6623 15 8 7.9438 7.7031 -2.6586 16 14 8.7058 5.4944 -4.0109 17 1 8.1846 4.5749 -5.0540 18 1 9.9632 6.1238 -4.4887 19 1 8.9772 4.7293 -2.7674 20 1 -0.3634 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.7298 2.2536 0.8424 24 1 4.2289 1.4764 -0.7291 25 1 4.0825 1.4685 1.0455 26 1 3.6599 3.8825 1.0632 27 1 5.1574 3.5649 0.1526 28 1 1.8063 4.3386 -2.2551 29 1 1.4743 4.3871 -0.5058 30 1 2.2514 1.9330 -2.1484 31 1 0.6653 2.2575 -1.4071 32 1 3.4467 4.8482 -3.8353 33 1 3.0829 6.2955 -2.8750 34 1 4.8725 6.8594 -4.6709 35 1 7.2430 7.3799 -4.5751 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725581087.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 18:58:15 Heat of formation + Delta-G solvation = -8.899645 kcal Electronic energy + Delta-G solvation = -16937.178606 eV Core-core repulsion = 14267.931203 eV Total energy + Delta-G solvation = -2669.247403 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 273.072 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -36.22440 -32.81811 -30.46208 -29.36642 -28.71140 -27.88036 -24.81368 -22.42056 -21.28627 -19.80558 -18.77686 -17.62962 -15.83303 -15.10680 -13.68145 -13.12795 -12.84346 -12.76522 -12.49799 -12.34709 -12.19624 -11.80382 -11.23050 -11.16017 -10.56840 -10.39154 -10.10891 -10.03289 -9.72295 -9.43237 -9.21210 -9.08264 -8.79535 -8.65954 -8.55667 -8.35230 -7.93735 -7.64989 -6.65433 -6.46208 -6.15991 -5.96268 -4.19642 -4.03927 -3.63369 -0.98572 2.78380 3.70007 4.74395 4.95335 5.02603 5.53437 5.70266 5.92013 5.93705 6.13839 6.24915 6.38348 6.41416 6.48794 6.66475 6.94385 7.09966 7.17379 7.29729 7.36408 7.44946 7.47954 7.86354 7.90473 8.01174 8.15158 8.63206 8.81079 9.02453 9.14886 9.18090 9.74167 9.84182 10.21216 10.90673 11.70111 11.88048 Molecular weight = 273.07amu Principal moments of inertia in cm(-1) A = 0.036512 B = 0.004564 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.682277 B = 6133.565603 C = 6382.326662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.318 6.318 3 C -0.020 4.020 4 C -0.117 4.117 5 C 0.171 3.829 6 N -0.551 5.551 7 C 0.173 3.827 8 C -0.130 4.130 9 C -0.576 4.576 10 C 0.107 3.893 11 C -0.275 4.275 12 C -0.069 4.069 13 S -0.108 6.108 14 C 0.065 3.935 15 O -0.871 6.871 16 Si 0.877 3.123 17 H -0.306 1.306 18 H -0.298 1.298 19 H -0.271 1.271 20 H 0.068 0.932 21 H 0.073 0.927 22 H 0.088 0.912 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.053 0.947 26 H 0.007 0.993 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.003 0.997 30 H 0.070 0.930 31 H 0.043 0.957 32 H -0.047 1.047 33 H -0.048 1.048 34 H 0.080 0.920 35 H -0.026 1.026 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.752 -17.133 5.997 24.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S -0.089 6.089 3 C -0.147 4.147 4 C -0.159 4.159 5 C 0.041 3.959 6 N -0.272 5.272 7 C 0.041 3.959 8 C -0.172 4.172 9 C -0.774 4.774 10 C 0.068 3.932 11 C -0.309 4.309 12 C -0.186 4.186 13 S 0.140 5.860 14 C -0.056 4.056 15 O -0.819 6.819 16 Si 0.709 3.291 17 H -0.235 1.235 18 H -0.226 1.226 19 H -0.196 1.196 20 H 0.087 0.913 21 H 0.092 0.908 22 H 0.107 0.893 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.025 0.975 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.021 0.979 30 H 0.088 0.912 31 H 0.061 0.939 32 H -0.030 1.030 33 H -0.030 1.030 34 H 0.098 0.902 35 H -0.009 1.009 Dipole moment (debyes) X Y Z Total from point charges -13.463 -18.905 6.992 24.239 hybrid contribution -2.294 1.335 -1.104 2.874 sum -15.757 -17.570 5.889 24.324 Atomic orbital electron populations 1.23209 0.95676 1.04979 1.04416 1.86756 1.06309 1.17846 1.97986 1.23133 1.00970 0.89596 1.01020 1.22116 0.91339 1.01320 1.01094 1.20621 0.98126 0.88173 0.89000 1.43251 1.01971 1.56717 1.25286 1.20598 0.85780 0.90897 0.98592 1.22445 0.98090 1.00691 0.95957 1.20032 0.89385 1.52347 1.15631 1.17252 0.92517 0.91223 0.92180 1.21983 0.95495 1.10448 1.03011 1.25089 1.00241 0.97252 0.95973 1.81539 1.13413 1.57212 1.33865 1.22095 0.90492 0.96554 0.96442 1.94854 1.80222 1.56526 1.50300 0.87323 0.84113 0.80562 0.77061 1.23462 1.22553 1.19583 0.91294 0.90780 0.89325 0.90839 0.91375 0.92797 0.97517 0.91577 0.92206 0.97921 0.91158 0.93871 1.02974 1.03049 0.90177 1.00945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.38 10.45 101.05 1.06 -1.32 16 2 S -0.32 -8.15 21.79 -107.50 -2.34 -10.49 16 3 C -0.02 -0.56 2.61 -26.69 -0.07 -0.63 16 4 C -0.12 -3.68 5.37 -26.61 -0.14 -3.83 16 5 C 0.17 6.20 6.50 -3.71 -0.02 6.18 16 6 N -0.55 -22.18 3.12 -165.81 -0.52 -22.70 16 7 C 0.17 6.09 6.51 -3.56 -0.02 6.07 16 8 C -0.13 -3.94 5.28 -26.61 -0.14 -4.08 16 9 C -0.58 -26.50 7.71 -8.71 -0.07 -26.57 16 10 C 0.11 4.93 5.11 -29.77 -0.15 4.78 16 11 C -0.28 -12.95 10.18 -36.88 -0.38 -13.33 16 12 C -0.07 -3.40 4.83 -36.07 -0.17 -3.58 16 13 S -0.11 -5.19 20.81 -107.50 -2.24 -7.42 16 14 C 0.06 3.17 3.07 36.00 0.11 3.28 16 15 O -0.87 -47.35 18.01 -35.23 -0.63 -47.98 16 16 Si 0.88 37.93 28.04 -169.99 -4.77 33.16 16 17 H -0.31 -12.58 7.11 56.52 0.40 -12.18 16 18 H -0.30 -12.22 7.11 56.52 0.40 -11.82 16 19 H -0.27 -11.95 7.11 56.52 0.40 -11.55 16 20 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 21 H 0.07 1.53 7.10 -51.93 -0.37 1.16 16 22 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 23 H 0.07 2.05 8.14 -51.92 -0.42 1.63 16 24 H 0.07 2.28 8.14 -51.93 -0.42 1.86 16 25 H 0.05 1.55 8.14 -51.93 -0.42 1.13 16 26 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 2.58 6.77 -51.93 -0.35 2.23 16 28 H 0.06 2.20 6.97 -51.93 -0.36 1.83 16 29 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.07 2.28 8.14 -51.93 -0.42 1.86 16 31 H 0.04 1.16 6.86 -51.93 -0.36 0.80 16 32 H -0.05 -2.14 8.10 -51.93 -0.42 -2.56 16 33 H -0.05 -2.21 8.14 -51.93 -0.42 -2.63 16 34 H 0.08 3.54 8.06 -52.49 -0.42 3.11 16 35 H -0.03 -1.24 7.90 -51.93 -0.41 -1.65 16 LS Contribution 305.75 15.07 4.61 4.61 Total: -2.00 -97.80 305.75 -11.18 -108.99 By element: Atomic # 1 Polarization: -19.83 SS G_CDS: -5.29 Total: -25.13 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: 0.00 Total: -33.03 kcal Atomic # 7 Polarization: -22.18 SS G_CDS: -0.52 Total: -22.70 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -0.63 Total: -47.98 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: -4.77 Total: 33.16 kcal Atomic # 16 Polarization: -13.33 SS G_CDS: -4.58 Total: -17.91 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -97.80 -11.18 -108.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725581087.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.086 kcal (2) G-P(sol) polarization free energy of solvation -97.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -108.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds