Wall clock time and date at job start Tue Mar 17 2020 18:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81401 * 103.00219 * 2 1 4 4 C 1.53035 * 109.46197 * 174.99840 * 3 2 1 5 5 C 1.53191 * 109.31327 * 181.38899 * 4 3 2 6 6 N 1.46926 * 108.89109 * 305.29292 * 5 4 3 7 7 C 1.47207 * 118.55531 * 53.54119 * 6 5 4 8 8 C 1.53038 * 109.45868 * 295.07144 * 3 2 1 9 9 C 1.39497 * 120.63130 * 233.67248 * 6 5 4 10 10 C 1.50857 * 127.52164 * 179.70712 * 9 6 5 11 11 C 1.49003 * 111.41743 * 179.82192 * 10 9 6 12 12 C 1.31164 * 116.92121 * 0.50169 * 11 10 9 13 13 S 1.76454 * 109.78892 * 359.71369 * 12 11 10 14 14 C 1.50695 * 125.10072 * 179.71409 * 12 11 10 15 15 O 1.42899 * 109.47092 * 120.02828 * 14 12 11 16 16 Si 1.86309 * 109.46893 * 240.02172 * 14 12 11 17 17 H 1.48502 * 109.47049 * 60.00316 * 16 14 12 18 18 H 1.48502 * 109.47004 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47432 * 300.00500 * 16 14 12 20 20 H 1.08996 * 109.47353 * 299.99511 * 1 2 3 21 21 H 1.08996 * 109.47154 * 60.00373 * 1 2 3 22 22 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.44214 * 55.03630 * 3 2 1 24 24 H 1.09003 * 109.49576 * 61.43568 * 4 3 2 25 25 H 1.09004 * 109.49734 * 301.33937 * 4 3 2 26 26 H 1.09002 * 109.58786 * 65.15336 * 5 4 3 27 27 H 1.08996 * 109.58870 * 185.43616 * 5 4 3 28 28 H 1.08996 * 109.53610 * 186.67231 * 7 6 5 29 29 H 1.09002 * 109.68003 * 66.36699 * 7 6 5 30 30 H 1.09002 * 109.49557 * 298.56083 * 8 3 2 31 31 H 1.08996 * 109.50003 * 58.65980 * 8 3 2 32 32 H 1.08994 * 109.09526 * 300.51950 * 10 9 6 33 33 H 1.08998 * 109.09737 * 59.48577 * 10 9 6 34 34 H 1.07992 * 121.53988 * 180.21328 * 11 10 9 35 35 H 1.09000 * 109.47580 * 0.02562 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7374 1.9409 0.1258 5 6 4.0753 3.4347 0.1604 6 7 3.4929 4.0817 -1.0233 7 6 2.0563 3.9009 -1.2887 8 6 1.7410 2.4018 -1.3070 9 6 4.2864 4.8479 -1.8772 10 6 3.8562 5.5707 -3.1294 11 6 4.9988 6.2852 -3.7651 12 6 6.1664 6.1796 -3.1769 13 16 6.0191 5.1776 -1.7320 14 6 7.4421 6.8183 -3.6623 15 8 7.9438 7.7031 -2.6586 16 14 8.7058 5.4944 -4.0109 17 1 8.1846 4.5749 -5.0540 18 1 9.9632 6.1238 -4.4887 19 1 8.9772 4.7293 -2.7674 20 1 -0.3634 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.7298 2.2536 0.8424 24 1 4.2289 1.4764 -0.7291 25 1 4.0825 1.4685 1.0455 26 1 3.6599 3.8825 1.0632 27 1 5.1574 3.5649 0.1526 28 1 1.8063 4.3386 -2.2551 29 1 1.4743 4.3871 -0.5058 30 1 2.2514 1.9330 -2.1484 31 1 0.6653 2.2575 -1.4071 32 1 3.4467 4.8482 -3.8353 33 1 3.0829 6.2955 -2.8750 34 1 4.8725 6.8594 -4.6709 35 1 7.2430 7.3799 -4.5751 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725581087.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 18:58:13 Heat of formation + Delta-G solvation = -91.352276 kcal Electronic energy + Delta-G solvation = -16940.754020 eV Core-core repulsion = 14267.931203 eV Total energy + Delta-G solvation = -2672.822817 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 273.072 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -38.91191 -36.49752 -33.54901 -32.38725 -31.88899 -29.60264 -28.48627 -25.37767 -24.02075 -23.25357 -22.08587 -20.70920 -19.17358 -17.44201 -16.64642 -15.84223 -15.61861 -15.26884 -15.21486 -14.98715 -14.69022 -14.51104 -14.23570 -13.98778 -13.86353 -13.65919 -13.16607 -12.79657 -12.76434 -12.36640 -12.28834 -12.12287 -11.99882 -11.67936 -11.55095 -11.43026 -11.20954 -10.70596 -10.19857 -9.86956 -9.29463 -8.63045 -8.24028 -7.68918 -7.58666 -4.53795 0.78897 1.27617 1.48676 1.61819 1.72995 1.84893 2.03674 2.77289 3.28858 3.66220 3.78354 3.85403 4.22993 4.33597 4.40441 4.43120 4.52551 4.65602 4.78747 4.87107 4.89735 4.92558 4.98067 5.01113 5.11079 5.17514 5.23570 5.34331 5.37435 5.41805 5.53052 6.06217 6.33340 6.56109 7.78381 7.85643 8.56602 Molecular weight = 273.07amu Principal moments of inertia in cm(-1) A = 0.036512 B = 0.004564 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.682277 B = 6133.565603 C = 6382.326662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 S -0.311 6.311 3 C -0.020 4.020 4 C -0.102 4.102 5 C 0.169 3.831 6 N -0.586 5.586 7 C 0.171 3.829 8 C -0.112 4.112 9 C -0.587 4.587 10 C 0.113 3.887 11 C -0.284 4.284 12 C -0.104 4.104 13 S -0.141 6.141 14 C -0.005 4.005 15 O -0.941 6.941 16 Si 0.968 3.032 17 H -0.269 1.269 18 H -0.257 1.257 19 H -0.289 1.289 20 H 0.087 0.913 21 H 0.080 0.920 22 H 0.120 0.880 23 H 0.092 0.908 24 H 0.041 0.959 25 H 0.083 0.917 26 H 0.022 0.978 27 H 0.026 0.974 28 H 0.032 0.968 29 H 0.022 0.978 30 H 0.045 0.955 31 H 0.087 0.913 32 H -0.048 1.048 33 H -0.063 1.063 34 H 0.100 0.900 35 H -0.032 1.032 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.821 -20.897 6.445 28.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 S -0.083 6.083 3 C -0.148 4.148 4 C -0.142 4.142 5 C 0.041 3.959 6 N -0.312 5.312 7 C 0.042 3.958 8 C -0.154 4.154 9 C -0.784 4.784 10 C 0.075 3.925 11 C -0.319 4.319 12 C -0.221 4.221 13 S 0.106 5.894 14 C -0.122 4.122 15 O -0.892 6.892 16 Si 0.795 3.205 17 H -0.195 1.195 18 H -0.182 1.182 19 H -0.215 1.215 20 H 0.106 0.894 21 H 0.099 0.901 22 H 0.138 0.862 23 H 0.110 0.890 24 H 0.060 0.940 25 H 0.102 0.898 26 H 0.040 0.960 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.105 0.895 32 H -0.031 1.031 33 H -0.046 1.046 34 H 0.118 0.882 35 H -0.015 1.015 Dipole moment (debyes) X Y Z Total from point charges -15.543 -22.674 7.413 28.472 hybrid contribution -1.951 2.420 -1.152 3.315 sum -17.494 -20.254 6.261 27.485 Atomic orbital electron populations 1.23422 0.90781 1.07534 1.05723 1.86707 1.11236 1.12322 1.98038 1.22836 0.98854 0.92555 1.00557 1.21740 0.93844 0.97173 1.01464 1.20662 0.95801 0.91197 0.88254 1.43383 1.03439 1.58291 1.26136 1.20746 0.83366 0.94129 0.97595 1.22186 1.00543 0.96479 0.96144 1.20379 0.88617 1.53332 1.16085 1.17186 0.91738 0.90975 0.92639 1.22362 0.95340 1.10358 1.03799 1.25282 1.01161 0.98667 0.96956 1.81523 1.16426 1.57029 1.34377 1.23284 0.93954 0.99829 0.95142 1.94769 1.82405 1.59764 1.52241 0.85833 0.80721 0.76814 0.77166 1.19506 1.18204 1.21512 0.89377 0.90124 0.86202 0.88968 0.93971 0.89812 0.96040 0.95502 0.94969 0.96033 0.93637 0.89452 1.03122 1.04594 0.88193 1.01494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 81. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.64 10.45 113.37 1.18 -2.46 16 2 S -0.31 -14.13 21.79 -56.49 -1.23 -15.36 16 3 C -0.02 -1.04 2.61 30.62 0.08 -0.96 16 4 C -0.10 -6.10 5.37 30.67 0.16 -5.94 16 5 C 0.17 12.11 6.50 86.36 0.56 12.67 16 6 N -0.59 -46.91 3.12 -678.50 -2.11 -49.03 16 7 C 0.17 11.70 6.51 86.31 0.56 12.26 16 8 C -0.11 -6.35 5.28 30.67 0.16 -6.19 16 9 C -0.59 -54.42 7.71 86.94 0.67 -53.75 16 10 C 0.11 10.53 5.11 28.63 0.15 10.67 16 11 C -0.28 -27.01 10.18 24.96 0.25 -26.75 16 12 C -0.10 -10.36 4.83 25.48 0.12 -10.24 16 13 S -0.14 -13.77 20.81 -56.49 -1.18 -14.94 16 14 C -0.01 -0.53 3.07 71.23 0.22 -0.31 16 15 O -0.94 -104.16 18.01 -148.98 -2.68 -106.84 16 16 Si 0.97 80.45 28.04 68.60 1.92 82.37 16 17 H -0.27 -20.59 7.11 99.48 0.71 -19.88 16 18 H -0.26 -19.56 7.11 99.48 0.71 -18.86 16 19 H -0.29 -24.82 7.11 99.48 0.71 -24.12 16 20 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 21 H 0.08 2.72 7.10 -2.39 -0.02 2.71 16 22 H 0.12 3.47 8.14 -2.39 -0.02 3.45 16 23 H 0.09 4.58 8.14 -2.39 -0.02 4.56 16 24 H 0.04 2.73 8.14 -2.39 -0.02 2.71 16 25 H 0.08 4.51 8.14 -2.39 -0.02 4.49 16 26 H 0.02 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.03 2.09 6.77 -2.39 -0.02 2.07 16 28 H 0.03 2.32 6.97 -2.39 -0.02 2.31 16 29 H 0.02 1.41 8.14 -2.39 -0.02 1.40 16 30 H 0.04 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.09 4.18 6.86 -2.39 -0.02 4.16 16 32 H -0.05 -4.42 8.10 -2.39 -0.02 -4.44 16 33 H -0.06 -5.91 8.14 -2.39 -0.02 -5.93 16 34 H 0.10 8.88 8.06 -2.91 -0.02 8.86 16 35 H -0.03 -3.05 7.90 -2.39 -0.02 -3.07 16 Total: -2.00 -208.04 305.75 0.66 -207.37 By element: Atomic # 1 Polarization: -34.40 SS G_CDS: 1.82 Total: -32.59 kcal Atomic # 6 Polarization: -75.12 SS G_CDS: 4.13 Total: -70.99 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -2.11 Total: -49.03 kcal Atomic # 8 Polarization: -104.16 SS G_CDS: -2.68 Total: -106.84 kcal Atomic # 14 Polarization: 80.45 SS G_CDS: 1.92 Total: 82.37 kcal Atomic # 16 Polarization: -27.89 SS G_CDS: -2.41 Total: -30.30 kcal Total: -208.04 0.66 -207.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725581087.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.020 kcal (2) G-P(sol) polarization free energy of solvation -208.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -207.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds