Wall clock time and date at job start Tue Mar 17 2020 18:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 108.92613 * 2 1 4 4 N 1.44633 * 109.19767 * 241.18603 * 2 1 3 5 5 C 1.28097 * 118.56718 * 239.83866 * 4 2 1 6 6 C 1.50699 * 125.22840 * 179.67885 * 5 4 2 7 7 S 1.76671 * 109.54498 * 359.69805 * 5 4 2 8 8 C 1.51087 * 109.04344 * 118.90569 * 2 1 3 9 9 C 1.50706 * 127.94510 * 300.58094 * 8 2 1 10 10 C 1.53005 * 109.46612 * 174.44248 * 9 8 2 11 11 C 1.54270 * 110.40226 * 61.53717 * 10 9 8 12 12 C 1.54013 * 108.84214 * 91.04612 * 11 10 9 13 13 C 1.55141 * 106.98474 * 47.10444 * 12 11 10 14 14 S 1.83095 * 110.39642 * 176.88816 * 10 9 8 15 15 C 1.53003 * 110.35591 * 299.20890 * 10 9 8 16 16 O 1.42896 * 109.47002 * 179.01114 * 15 10 9 17 17 Si 1.86298 * 109.47057 * 299.00889 * 15 10 9 18 18 H 1.48493 * 109.47614 * 300.62798 * 17 15 10 19 19 H 1.48504 * 109.47221 * 60.63138 * 17 15 10 20 20 H 1.48505 * 109.46938 * 180.62707 * 17 15 10 21 21 H 1.08997 * 109.47057 * 301.09968 * 1 2 3 22 22 H 1.09006 * 109.46522 * 61.09509 * 1 2 3 23 23 H 1.09001 * 109.47083 * 181.09348 * 1 2 3 24 24 H 1.08999 * 109.46955 * 179.97438 * 6 5 4 25 25 H 1.09003 * 109.47008 * 300.00048 * 6 5 4 26 26 H 1.09002 * 109.47069 * 59.99633 * 6 5 4 27 27 H 1.08996 * 109.47094 * 54.43860 * 9 8 2 28 28 H 1.08997 * 109.46911 * 294.44157 * 9 8 2 29 29 H 1.08999 * 109.60508 * 210.87638 * 11 10 9 30 30 H 1.09002 * 109.61157 * 331.02926 * 11 10 9 31 31 H 1.08997 * 109.89070 * 287.74009 * 12 11 10 32 32 H 1.09006 * 110.01130 * 166.52954 * 12 11 10 33 33 H 1.09001 * 110.85224 * 199.75630 * 13 12 11 34 34 H 1.08993 * 111.03351 * 76.19442 * 13 12 11 35 35 H 1.09002 * 109.47093 * 59.00975 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8836 1.0310 0.0000 4 7 2.0057 -0.6583 -1.1968 5 6 2.7409 -1.6998 -1.0720 6 6 3.3104 -2.5036 -2.2124 7 16 2.9843 -2.0495 0.6426 8 6 2.0230 -0.6903 1.2503 9 6 1.7539 -0.3134 2.6844 10 6 2.3431 -1.3790 3.6109 11 6 3.8723 -1.4660 3.4263 12 6 4.5491 -0.5084 4.4248 13 6 3.8854 -0.7506 5.8060 14 16 2.1114 -0.9001 5.3628 15 6 1.6948 -2.7380 3.3391 16 8 2.2745 -3.7224 4.1975 17 14 -0.1360 -2.6292 3.6666 18 1 -0.3635 -2.2318 5.0791 19 1 -0.7410 -1.6170 2.7640 20 1 -0.7628 -3.9522 3.4175 21 1 -0.3633 0.5308 0.8799 22 1 -0.3632 0.4968 -0.8997 23 1 -0.3633 -1.0275 0.0196 24 1 3.8959 -3.3329 -1.8156 25 1 2.4968 -2.8929 -2.8245 26 1 3.9507 -1.8661 -2.8221 27 1 0.6782 -0.2456 2.8464 28 1 2.2152 0.6504 2.8994 29 1 4.2060 -2.4864 3.6152 30 1 4.1346 -1.1810 2.4075 31 1 4.3928 0.5241 4.1125 32 1 5.6164 -0.7225 4.4820 33 1 4.0494 0.0985 6.4695 34 1 4.2511 -1.6717 6.2596 35 1 1.8619 -3.0189 2.2993 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725704890.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 18:49:47 Heat of formation + Delta-G solvation = -21.753195 kcal Electronic energy + Delta-G solvation = -17973.310930 eV Core-core repulsion = 15303.506156 eV Total energy + Delta-G solvation = -2669.804774 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 273.072 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -34.84446 -34.33821 -30.72432 -29.65657 -27.44566 -26.21163 -24.19303 -22.24852 -20.54559 -19.27102 -18.91067 -17.28994 -15.15807 -13.98640 -13.32029 -13.25124 -12.22815 -12.06151 -11.68720 -11.54561 -11.26830 -10.95444 -10.80727 -10.51862 -10.13885 -9.92532 -9.84430 -9.76783 -9.18283 -9.05052 -8.85740 -8.48482 -8.24464 -8.13821 -7.96657 -7.59021 -7.48966 -7.33582 -6.86223 -6.62045 -6.04192 -5.21138 -4.84114 -3.77806 -3.25133 -1.93857 4.46628 4.67167 5.02984 5.14377 5.20748 5.38173 5.40269 6.57360 6.61232 6.95643 6.97369 7.03289 7.23174 7.24795 7.32272 7.44213 7.52435 7.81561 7.87914 7.95169 8.03720 8.25648 8.27600 8.40270 8.43102 8.83451 8.96460 8.97995 9.04910 9.10798 9.34792 9.54099 9.71611 9.98394 10.49476 10.75140 12.04278 Molecular weight = 273.07amu Principal moments of inertia in cm(-1) A = 0.021195 B = 0.008868 C = 0.008127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.733165 B = 3156.487276 C = 3444.481290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.217 3.783 3 H -0.007 1.007 4 N -0.574 5.574 5 C 0.090 3.910 6 C -0.062 4.062 7 S -0.088 6.088 8 C -0.737 4.737 9 C 0.103 3.897 10 C 0.029 3.971 11 C -0.106 4.106 12 C -0.118 4.118 13 C -0.062 4.062 14 S -0.361 6.361 15 C 0.047 3.953 16 O -0.881 6.881 17 Si 0.834 3.166 18 H -0.277 1.277 19 H -0.290 1.290 20 H -0.304 1.304 21 H 0.034 0.966 22 H 0.007 0.993 23 H 0.033 0.967 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.058 0.942 27 H -0.003 1.003 28 H -0.019 1.019 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.036 4.107 -3.283 7.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.103 3.897 3 H 0.010 0.990 4 N -0.298 5.298 5 C -0.203 4.203 6 C -0.122 4.122 7 S 0.150 5.850 8 C -0.851 4.851 9 C 0.061 3.939 10 C -0.081 4.081 11 C -0.146 4.146 12 C -0.157 4.157 13 C -0.210 4.210 14 S -0.133 6.133 15 C -0.076 4.076 16 O -0.828 6.828 17 Si 0.668 3.332 18 H -0.203 1.203 19 H -0.218 1.218 20 H -0.232 1.232 21 H 0.053 0.947 22 H 0.026 0.974 23 H 0.052 0.948 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.015 0.985 28 H -0.001 1.001 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.520 3.817 -2.296 5.677 hybrid contribution 0.109 0.735 -0.415 0.851 sum 3.629 4.552 -2.710 6.422 Atomic orbital electron populations 1.22073 1.01136 0.99004 0.96277 1.19101 0.90741 0.94041 0.85791 0.99031 1.70409 1.15505 1.10752 1.33107 1.27366 0.97980 0.95948 0.98965 1.20168 0.99497 0.97898 0.94665 1.83650 1.62560 1.41736 0.97030 1.23714 1.52665 1.16926 0.91841 1.18282 0.93901 0.91621 0.90083 1.24311 0.97173 1.02713 0.83885 1.22386 0.94096 0.99082 0.99053 1.22520 0.98275 1.00803 0.94100 1.23828 0.96177 1.01772 0.99227 1.86697 1.10858 1.90872 1.24885 1.23566 0.96906 0.90376 0.96772 1.94747 1.75288 1.50422 1.62332 0.87691 0.92129 0.75102 0.78256 1.20325 1.21827 1.23212 0.94714 0.97424 0.94777 0.91809 0.92205 0.92286 0.98542 1.00063 0.91044 0.88936 0.92254 0.92959 0.91410 0.90967 0.95485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.10 9.42 37.16 0.35 -4.75 16 2 C 0.22 9.24 3.94 -69.89 -0.28 8.97 16 3 H -0.01 -0.32 8.14 -51.93 -0.42 -0.74 16 4 N -0.57 -23.18 10.51 -52.88 -0.56 -23.73 16 5 C 0.09 3.46 7.66 -13.84 -0.11 3.36 16 6 C -0.06 -1.90 10.50 36.01 0.38 -1.52 16 7 S -0.09 -3.73 16.83 -107.50 -1.81 -5.54 16 8 C -0.74 -32.86 5.46 -28.84 -0.16 -33.02 16 9 C 0.10 4.60 4.55 -27.88 -0.13 4.47 16 10 C 0.03 1.28 0.22 -89.95 -0.02 1.26 16 11 C -0.11 -4.47 4.51 -25.54 -0.12 -4.58 16 12 C -0.12 -4.28 6.46 -25.07 -0.16 -4.45 16 13 C -0.06 -2.23 7.38 38.29 0.28 -1.95 16 14 S -0.36 -15.24 19.88 -107.50 -2.14 -17.38 16 15 C 0.05 2.25 1.87 37.16 0.07 2.32 16 16 O -0.88 -46.13 16.62 -35.23 -0.59 -46.72 16 17 Si 0.83 38.40 25.27 -169.99 -4.30 34.10 16 18 H -0.28 -12.66 6.86 56.52 0.39 -12.27 16 19 H -0.29 -13.30 6.43 56.52 0.36 -12.93 16 20 H -0.30 -13.79 7.11 56.52 0.40 -13.39 16 21 H 0.03 1.37 7.98 -51.93 -0.41 0.96 16 22 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 23 H 0.03 1.41 8.14 -51.93 -0.42 0.98 16 24 H 0.06 1.84 8.14 -51.93 -0.42 1.42 16 25 H 0.06 1.73 8.14 -51.93 -0.42 1.30 16 26 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 27 H 0.00 -0.16 5.52 -51.93 -0.29 -0.44 16 28 H -0.02 -0.83 8.14 -51.93 -0.42 -1.25 16 29 H 0.07 3.19 7.07 -51.93 -0.37 2.83 16 30 H 0.09 3.94 5.06 -43.51 -0.22 3.72 16 31 H 0.06 2.10 8.14 -51.93 -0.42 1.67 16 32 H 0.05 1.69 8.14 -51.93 -0.42 1.26 16 33 H 0.07 2.15 8.14 -51.93 -0.42 1.73 16 34 H 0.07 2.60 8.14 -51.93 -0.42 2.18 16 35 H 0.03 1.42 4.61 -38.41 -0.18 1.24 16 LS Contribution 291.28 15.07 4.39 4.39 Total: -2.00 -95.59 291.28 -9.84 -105.43 By element: Atomic # 1 Polarization: -15.69 SS G_CDS: -4.96 Total: -20.65 kcal Atomic # 6 Polarization: -30.01 SS G_CDS: 0.12 Total: -29.89 kcal Atomic # 7 Polarization: -23.18 SS G_CDS: -0.56 Total: -23.73 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -0.59 Total: -46.72 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: -4.30 Total: 34.10 kcal Atomic # 16 Polarization: -18.98 SS G_CDS: -3.95 Total: -22.93 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -95.59 -9.84 -105.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725704890.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.675 kcal (2) G-P(sol) polarization free energy of solvation -95.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds