Wall clock time and date at job start Tue Mar 17 2020 18:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 108.92613 * 2 1 4 4 N 1.44633 * 109.19767 * 241.18603 * 2 1 3 5 5 C 1.28097 * 118.56718 * 239.83866 * 4 2 1 6 6 C 1.50699 * 125.22840 * 179.67885 * 5 4 2 7 7 S 1.76671 * 109.54498 * 359.69805 * 5 4 2 8 8 C 1.51087 * 109.04344 * 118.90569 * 2 1 3 9 9 C 1.50706 * 127.94510 * 300.58094 * 8 2 1 10 10 C 1.53005 * 109.46612 * 174.44248 * 9 8 2 11 11 C 1.54270 * 110.40226 * 61.53717 * 10 9 8 12 12 C 1.54013 * 108.84214 * 91.04612 * 11 10 9 13 13 C 1.55141 * 106.98474 * 47.10444 * 12 11 10 14 14 S 1.83095 * 110.39642 * 176.88816 * 10 9 8 15 15 C 1.53003 * 110.35591 * 299.20890 * 10 9 8 16 16 O 1.42896 * 109.47002 * 179.01114 * 15 10 9 17 17 Si 1.86298 * 109.47057 * 299.00889 * 15 10 9 18 18 H 1.48493 * 109.47614 * 300.62798 * 17 15 10 19 19 H 1.48504 * 109.47221 * 60.63138 * 17 15 10 20 20 H 1.48505 * 109.46938 * 180.62707 * 17 15 10 21 21 H 1.08997 * 109.47057 * 301.09968 * 1 2 3 22 22 H 1.09006 * 109.46522 * 61.09509 * 1 2 3 23 23 H 1.09001 * 109.47083 * 181.09348 * 1 2 3 24 24 H 1.08999 * 109.46955 * 179.97438 * 6 5 4 25 25 H 1.09003 * 109.47008 * 300.00048 * 6 5 4 26 26 H 1.09002 * 109.47069 * 59.99633 * 6 5 4 27 27 H 1.08996 * 109.47094 * 54.43860 * 9 8 2 28 28 H 1.08997 * 109.46911 * 294.44157 * 9 8 2 29 29 H 1.08999 * 109.60508 * 210.87638 * 11 10 9 30 30 H 1.09002 * 109.61157 * 331.02926 * 11 10 9 31 31 H 1.08997 * 109.89070 * 287.74009 * 12 11 10 32 32 H 1.09006 * 110.01130 * 166.52954 * 12 11 10 33 33 H 1.09001 * 110.85224 * 199.75630 * 13 12 11 34 34 H 1.08993 * 111.03351 * 76.19442 * 13 12 11 35 35 H 1.09002 * 109.47093 * 59.00975 * 15 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8836 1.0310 0.0000 4 7 2.0057 -0.6583 -1.1968 5 6 2.7409 -1.6998 -1.0720 6 6 3.3104 -2.5036 -2.2124 7 16 2.9843 -2.0495 0.6426 8 6 2.0230 -0.6903 1.2503 9 6 1.7539 -0.3134 2.6844 10 6 2.3431 -1.3790 3.6109 11 6 3.8723 -1.4660 3.4263 12 6 4.5491 -0.5084 4.4248 13 6 3.8854 -0.7506 5.8060 14 16 2.1114 -0.9001 5.3628 15 6 1.6948 -2.7380 3.3391 16 8 2.2745 -3.7224 4.1975 17 14 -0.1360 -2.6292 3.6666 18 1 -0.3635 -2.2318 5.0791 19 1 -0.7410 -1.6170 2.7640 20 1 -0.7628 -3.9522 3.4175 21 1 -0.3633 0.5308 0.8799 22 1 -0.3632 0.4968 -0.8997 23 1 -0.3633 -1.0275 0.0196 24 1 3.8959 -3.3329 -1.8156 25 1 2.4968 -2.8929 -2.8245 26 1 3.9507 -1.8661 -2.8221 27 1 0.6782 -0.2456 2.8464 28 1 2.2152 0.6504 2.8994 29 1 4.2060 -2.4864 3.6152 30 1 4.1346 -1.1810 2.4075 31 1 4.3928 0.5241 4.1125 32 1 5.6164 -0.7225 4.4820 33 1 4.0494 0.0985 6.4695 34 1 4.2511 -1.6717 6.2596 35 1 1.8619 -3.0189 2.2993 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725704890.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 18:49:46 Heat of formation + Delta-G solvation = -104.131499 kcal Electronic energy + Delta-G solvation = -17976.883122 eV Core-core repulsion = 15303.506156 eV Total energy + Delta-G solvation = -2673.376966 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 273.072 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.11724 -37.60047 -33.87615 -32.86728 -31.08594 -29.14507 -27.41824 -25.64060 -23.90308 -22.55512 -22.13308 -20.61338 -18.44790 -17.20802 -16.60062 -16.47927 -15.63341 -15.19671 -14.93061 -14.67827 -14.21816 -14.10345 -13.97752 -13.55932 -13.41297 -13.12356 -13.00683 -12.97362 -12.35759 -12.33625 -12.11649 -11.99298 -11.72123 -11.66612 -11.32723 -11.02399 -10.89444 -10.73936 -10.28365 -9.99903 -9.30210 -8.62062 -8.19608 -7.68030 -7.16546 -5.37832 1.18914 1.46782 1.57958 1.59761 1.68655 1.87504 2.04442 2.91522 3.36897 3.91328 4.05510 4.15801 4.42867 4.60116 4.65918 4.73086 4.78545 4.82403 4.87650 4.89167 4.95520 4.98017 5.01287 5.14439 5.26508 5.32289 5.53641 5.61525 5.71043 5.84724 5.86401 5.99088 6.20639 6.35567 7.05923 7.49035 8.21521 Molecular weight = 273.07amu Principal moments of inertia in cm(-1) A = 0.021195 B = 0.008868 C = 0.008127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.733165 B = 3156.487276 C = 3444.481290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.207 3.793 3 H -0.018 1.018 4 N -0.576 5.576 5 C 0.118 3.882 6 C -0.059 4.059 7 S -0.147 6.147 8 C -0.773 4.773 9 C 0.117 3.883 10 C 0.028 3.972 11 C -0.100 4.100 12 C -0.110 4.110 13 C -0.038 4.038 14 S -0.416 6.416 15 C 0.021 3.979 16 O -0.929 6.929 17 Si 0.867 3.133 18 H -0.274 1.274 19 H -0.294 1.294 20 H -0.298 1.298 21 H 0.026 0.974 22 H 0.042 0.958 23 H 0.010 0.990 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.096 0.904 27 H -0.033 1.033 28 H -0.023 1.023 29 H 0.033 0.967 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.125 0.875 34 H 0.073 0.927 35 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.439 5.068 -4.362 9.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.093 3.907 3 H -0.001 1.001 4 N -0.298 5.298 5 C -0.177 4.177 6 C -0.119 4.119 7 S 0.091 5.909 8 C -0.887 4.887 9 C 0.076 3.924 10 C -0.081 4.081 11 C -0.140 4.140 12 C -0.148 4.148 13 C -0.186 4.186 14 S -0.189 6.189 15 C -0.100 4.100 16 O -0.878 6.878 17 Si 0.701 3.299 18 H -0.200 1.200 19 H -0.222 1.222 20 H -0.225 1.225 21 H 0.045 0.955 22 H 0.061 0.939 23 H 0.029 0.971 24 H 0.100 0.900 25 H 0.106 0.894 26 H 0.114 0.886 27 H -0.015 1.015 28 H -0.005 1.005 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.143 0.857 34 H 0.092 0.908 35 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 4.899 4.798 -3.367 7.639 hybrid contribution -0.254 0.434 -0.218 0.548 sum 4.645 5.232 -3.585 7.861 Atomic orbital electron populations 1.21795 0.99577 0.97802 0.97674 1.19164 0.91912 0.93560 0.86107 1.00057 1.70423 1.16308 1.11557 1.31472 1.28449 0.95658 0.95001 0.98616 1.20416 1.00980 0.98050 0.92465 1.83706 1.63584 1.42495 1.01145 1.23903 1.54447 1.17988 0.92339 1.18074 0.91935 0.91496 0.90912 1.23877 0.98667 1.00338 0.85258 1.22231 0.92876 0.98428 1.00501 1.22458 1.00480 0.99690 0.92153 1.24017 0.90085 1.04329 1.00134 1.86662 1.17748 1.90654 1.23804 1.23825 0.99219 0.91560 0.95444 1.94678 1.77340 1.52311 1.63459 0.87159 0.89600 0.75017 0.78080 1.19957 1.22183 1.22546 0.95461 0.93907 0.97051 0.89956 0.89358 0.88598 1.01533 1.00470 0.94782 0.89860 0.91093 0.88072 0.85679 0.90796 0.97547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -8.69 9.42 71.98 0.68 -8.01 16 2 C 0.21 17.29 3.94 44.72 0.18 17.46 16 3 H -0.02 -1.50 8.14 -2.39 -0.02 -1.52 16 4 N -0.58 -44.70 10.51 -321.16 -3.38 -48.08 16 5 C 0.12 8.64 7.66 88.65 0.68 9.32 16 6 C -0.06 -3.30 10.50 71.24 0.75 -2.55 16 7 S -0.15 -12.34 16.83 -56.49 -0.95 -13.29 16 8 C -0.77 -68.64 5.46 29.23 0.16 -68.48 16 9 C 0.12 10.47 4.55 29.85 0.14 10.60 16 10 C 0.03 2.51 0.22 -10.36 0.00 2.51 16 11 C -0.10 -8.32 4.51 31.37 0.14 -8.18 16 12 C -0.11 -7.47 6.46 31.67 0.20 -7.26 16 13 C -0.04 -2.58 7.38 72.72 0.54 -2.05 16 14 S -0.42 -34.47 19.88 -56.49 -1.12 -35.59 16 15 C 0.02 2.06 1.87 71.98 0.13 2.20 16 16 O -0.93 -98.08 16.62 -148.98 -2.48 -100.55 16 17 Si 0.87 79.59 25.27 68.60 1.73 81.33 16 18 H -0.27 -24.81 6.86 99.48 0.68 -24.13 16 19 H -0.29 -26.93 6.43 99.48 0.64 -26.29 16 20 H -0.30 -26.72 7.11 99.48 0.71 -26.01 16 21 H 0.03 2.12 7.98 -2.39 -0.02 2.10 16 22 H 0.04 3.01 8.14 -2.38 -0.02 2.99 16 23 H 0.01 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.08 4.34 8.14 -2.39 -0.02 4.32 16 25 H 0.09 4.55 8.14 -2.39 -0.02 4.53 16 26 H 0.10 4.78 8.14 -2.39 -0.02 4.76 16 27 H -0.03 -3.11 5.52 -2.39 -0.01 -3.13 16 28 H -0.02 -2.00 8.14 -2.39 -0.02 -2.02 16 29 H 0.03 3.02 7.07 -2.39 -0.02 3.00 16 30 H 0.08 7.05 5.06 -7.74 -0.04 7.01 16 31 H 0.07 4.69 8.14 -2.39 -0.02 4.67 16 32 H 0.10 5.96 8.14 -2.38 -0.02 5.94 16 33 H 0.13 7.12 8.14 -2.39 -0.02 7.10 16 34 H 0.07 5.00 8.14 -2.39 -0.02 4.98 16 35 H 0.01 0.80 4.61 -10.98 -0.05 0.75 16 Total: -2.00 -199.79 291.28 -0.92 -200.72 By element: Atomic # 1 Polarization: -31.77 SS G_CDS: 1.68 Total: -30.09 kcal Atomic # 6 Polarization: -58.04 SS G_CDS: 3.59 Total: -54.44 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: -3.38 Total: -48.08 kcal Atomic # 8 Polarization: -98.08 SS G_CDS: -2.48 Total: -100.55 kcal Atomic # 14 Polarization: 79.59 SS G_CDS: 1.73 Total: 81.33 kcal Atomic # 16 Polarization: -46.80 SS G_CDS: -2.07 Total: -48.88 kcal Total: -199.79 -0.92 -200.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725704890.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.584 kcal (2) G-P(sol) polarization free energy of solvation -199.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -200.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds