Wall clock time and date at job start Thu Apr 2 2020 08:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46504 * 120.00015 * 2 1 4 4 C 1.36454 * 120.00301 * 180.02562 * 2 1 3 5 5 C 1.35298 * 119.99711 * 352.66005 * 4 2 1 6 6 C 1.41136 * 120.00162 * 322.12317 * 5 4 2 7 7 O 1.21803 * 119.99855 * 352.48156 * 6 5 4 8 8 C 1.48115 * 120.00206 * 172.48391 * 6 5 4 9 9 C 1.39574 * 119.75270 * 179.97438 * 8 6 5 10 10 F 1.35098 * 120.49608 * 359.97438 * 9 8 6 11 11 C 1.38903 * 118.99843 * 180.02562 * 9 8 6 12 12 C 1.38499 * 118.47179 * 359.97438 * 11 9 8 13 13 C 1.38622 * 119.39242 * 359.97438 * 12 11 9 14 14 N 1.31478 * 120.97793 * 0.02562 * 13 12 11 15 15 C 1.50705 * 120.30240 * 179.97438 * 12 11 9 16 16 O 1.42897 * 109.47123 * 300.00179 * 15 12 11 17 17 Si 1.86299 * 109.46848 * 179.97438 * 15 12 11 18 18 H 1.48499 * 109.47190 * 60.00088 * 17 15 12 19 19 H 1.48499 * 109.47009 * 180.02562 * 17 15 12 20 20 H 1.48503 * 109.46954 * 299.99905 * 17 15 12 21 21 H 1.08998 * 109.46679 * 307.50998 * 1 2 3 22 22 H 1.08995 * 109.47416 * 67.51463 * 1 2 3 23 23 H 1.08999 * 109.46916 * 187.51523 * 1 2 3 24 24 H 1.08996 * 109.47562 * 270.00793 * 3 2 1 25 25 H 1.09003 * 109.46863 * 30.01141 * 3 2 1 26 26 H 1.08998 * 109.46585 * 150.00217 * 3 2 1 27 27 H 1.07996 * 120.00478 * 172.65556 * 4 2 1 28 28 H 1.07998 * 119.99763 * 142.11998 * 5 4 2 29 29 H 1.08005 * 120.76631 * 179.97438 * 11 9 8 30 30 H 1.08002 * 119.51003 * 180.02562 * 13 12 11 31 31 H 1.09000 * 109.46399 * 59.99946 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1474 -1.1817 -0.0005 5 6 1.4792 -2.3487 0.1486 6 6 0.3816 -2.4254 1.0326 7 8 0.1199 -1.4854 1.7617 8 6 -0.4520 -3.6490 1.0737 9 6 -1.5359 -3.7195 1.9503 10 9 -1.8301 -2.6803 2.7618 11 6 -2.3068 -4.8747 1.9763 12 6 -1.9672 -5.9145 1.1268 13 6 -0.8775 -5.7741 0.2815 14 7 -0.1633 -4.6702 0.2757 15 6 -2.7749 -7.1867 1.1213 16 8 -2.7364 -7.7809 2.4203 17 14 -2.0591 -8.3714 -0.1257 18 1 -0.6521 -8.6798 0.2355 19 1 -2.8553 -9.6248 -0.1315 20 1 -2.0996 -7.7534 -1.4754 21 1 -0.3632 0.6258 0.8152 22 1 -0.3634 0.3930 -0.9495 23 1 -0.3633 -1.0188 0.1344 24 1 2.3791 1.5835 -1.0276 25 1 1.6085 2.0283 0.5140 26 1 3.1499 1.1383 0.5138 27 1 3.2207 -1.1855 -0.1201 28 1 1.7857 -3.2214 -0.4087 29 1 -3.1517 -4.9601 2.6437 30 1 -0.6111 -6.5836 -0.3820 31 1 -3.8075 -6.9603 0.8558 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380510240.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 2 2020 08:09:57 Heat of formation + Delta-G solvation = -42.194733 kcal Electronic energy + Delta-G solvation = -18493.847563 eV Core-core repulsion = 15271.558402 eV Total energy + Delta-G solvation = -3222.289161 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.24131 -40.19670 -38.94717 -36.83056 -33.08557 -31.44957 -30.71115 -29.35120 -28.34815 -26.20362 -24.44328 -22.81841 -21.78509 -20.26655 -18.70324 -17.32997 -16.78880 -16.15823 -15.92121 -15.55424 -15.25471 -15.15889 -14.24336 -14.06354 -13.52955 -13.27188 -12.96997 -12.71851 -12.66141 -12.57579 -12.36483 -12.01325 -11.92520 -11.29935 -10.99140 -10.24520 -10.06847 -9.98763 -9.90460 -9.33905 -8.75684 -8.72878 -8.07570 -7.37911 -5.99047 -5.42747 1.01909 1.74329 1.94370 2.93678 3.38570 3.47697 3.51522 3.56381 4.38823 4.51401 4.58800 4.73776 4.81546 4.91787 5.03775 5.19743 5.30529 5.39860 5.55564 5.64470 5.79097 5.94839 5.98166 6.26147 6.27148 6.40948 6.54834 6.80807 7.02071 7.14995 7.24882 7.40672 7.52552 8.15226 8.54573 9.86577 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.039104 B = 0.005968 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.861234 B = 4690.911223 C = 5199.321010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.574 5.574 3 C 0.075 3.925 4 C 0.251 3.749 5 C -0.411 4.411 6 C 0.441 3.559 7 O -0.502 6.502 8 C -0.014 4.014 9 C 0.094 3.906 10 F -0.123 7.123 11 C -0.114 4.114 12 C -0.044 4.044 13 C 0.048 3.952 14 N -0.419 5.419 15 C 0.019 3.981 16 O -0.852 6.852 17 Si 0.891 3.109 18 H -0.275 1.275 19 H -0.282 1.282 20 H -0.296 1.296 21 H 0.067 0.933 22 H 0.050 0.950 23 H 0.106 0.894 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.145 0.855 28 H 0.149 0.851 29 H 0.146 0.854 30 H 0.153 0.847 31 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.685 16.471 -7.723 20.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.274 5.274 3 C -0.068 4.068 4 C 0.116 3.884 5 C -0.441 4.441 6 C 0.332 3.668 7 O -0.386 6.386 8 C -0.151 4.151 9 C 0.072 3.928 10 F -0.102 7.102 11 C -0.140 4.140 12 C -0.047 4.047 13 C -0.112 4.112 14 N -0.130 5.130 15 C -0.101 4.101 16 O -0.799 6.799 17 Si 0.723 3.277 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.225 1.225 21 H 0.086 0.914 22 H 0.069 0.931 23 H 0.124 0.876 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.162 0.838 28 H 0.166 0.834 29 H 0.163 0.837 30 H 0.170 0.830 31 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 9.530 16.633 -8.214 20.855 hybrid contribution -0.734 -0.041 0.847 1.122 sum 8.795 16.592 -7.367 20.172 Atomic orbital electron populations 1.22603 0.78241 1.06639 1.00055 1.46826 1.07291 1.04840 1.68446 1.21920 0.97171 0.85753 1.01927 1.22046 0.96619 0.84839 0.84937 1.21286 1.08388 0.99620 1.14764 1.17982 0.81760 0.83813 0.83260 1.90700 1.69324 1.37290 1.41314 1.21706 0.97398 0.97705 0.98324 1.19003 0.96447 0.85807 0.91553 1.91501 1.92504 1.55896 1.70258 1.21488 1.01090 0.90778 1.00627 1.23247 0.94826 0.97985 0.88616 1.22702 0.93828 0.95135 0.99575 1.67446 1.27391 0.99334 1.18796 1.22957 0.93530 0.89310 1.04291 1.95026 1.92984 1.74345 1.17535 0.87229 0.80255 0.84588 0.75621 1.20019 1.20756 1.22532 0.91442 0.93133 0.87610 0.92072 0.91028 0.91031 0.83781 0.83370 0.83664 0.83020 0.98252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.85 8.58 59.85 0.51 1.37 16 2 N -0.57 -6.40 3.13 -190.32 -0.60 -7.00 16 3 C 0.08 0.52 10.74 59.85 0.64 1.16 16 4 C 0.25 2.93 9.99 -16.54 -0.17 2.76 16 5 C -0.41 -6.34 8.99 -39.53 -0.36 -6.70 16 6 C 0.44 8.41 4.84 -34.43 -0.17 8.25 16 7 O -0.50 -9.99 11.92 5.10 0.06 -9.92 16 8 C -0.01 -0.31 6.73 -82.91 -0.56 -0.87 16 9 C 0.09 2.13 7.31 -38.84 -0.28 1.85 16 10 F -0.12 -2.71 15.55 2.25 0.04 -2.68 16 11 C -0.11 -2.76 9.75 -39.24 -0.38 -3.15 16 12 C -0.04 -1.12 5.44 -104.38 -0.57 -1.69 16 13 C 0.05 1.12 9.84 -17.56 -0.17 0.94 16 14 N -0.42 -9.14 9.45 -9.73 -0.09 -9.23 16 15 C 0.02 0.54 2.91 36.01 0.10 0.65 16 16 O -0.85 -30.21 17.91 -35.23 -0.63 -30.85 16 17 Si 0.89 21.82 25.35 -169.99 -4.31 17.51 16 18 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 20 H -0.30 -6.40 7.11 56.52 0.40 -6.00 16 21 H 0.07 0.88 7.96 -51.93 -0.41 0.46 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.11 1.70 3.64 -52.47 -0.19 1.51 16 24 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 26 H 0.07 0.40 8.04 -51.93 -0.42 -0.02 16 27 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 28 H 0.15 2.29 7.58 -52.49 -0.40 1.89 16 29 H 0.15 3.47 8.06 -52.48 -0.42 3.05 16 30 H 0.15 3.29 4.89 -52.49 -0.26 3.03 16 31 H 0.00 0.02 7.96 -51.93 -0.41 -0.39 16 LS Contribution 270.29 15.07 4.07 4.07 Total: -1.00 -36.46 270.29 -5.85 -42.31 By element: Atomic # 1 Polarization: -5.79 SS G_CDS: -3.00 Total: -8.79 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -1.39 Total: 4.58 kcal Atomic # 7 Polarization: -15.54 SS G_CDS: -0.69 Total: -16.23 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -0.57 Total: -40.77 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.04 Total: -2.68 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.31 Total: 17.51 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -36.46 -5.85 -42.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380510240.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.115 kcal (2) G-P(sol) polarization free energy of solvation -36.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds