Wall clock time and date at job start Thu Apr 2 2020 08:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46504 * 120.00015 * 2 1 4 4 C 1.36454 * 120.00301 * 180.02562 * 2 1 3 5 5 C 1.35298 * 119.99711 * 352.66005 * 4 2 1 6 6 C 1.41136 * 120.00162 * 322.12317 * 5 4 2 7 7 O 1.21803 * 119.99855 * 352.48156 * 6 5 4 8 8 C 1.48115 * 120.00206 * 172.48391 * 6 5 4 9 9 C 1.39574 * 119.75270 * 179.97438 * 8 6 5 10 10 F 1.35098 * 120.49608 * 359.97438 * 9 8 6 11 11 C 1.38903 * 118.99843 * 180.02562 * 9 8 6 12 12 C 1.38499 * 118.47179 * 359.97438 * 11 9 8 13 13 C 1.38622 * 119.39242 * 359.97438 * 12 11 9 14 14 N 1.31478 * 120.97793 * 0.02562 * 13 12 11 15 15 C 1.50705 * 120.30240 * 179.97438 * 12 11 9 16 16 O 1.42897 * 109.47123 * 300.00179 * 15 12 11 17 17 Si 1.86299 * 109.46848 * 179.97438 * 15 12 11 18 18 H 1.48499 * 109.47190 * 60.00088 * 17 15 12 19 19 H 1.48499 * 109.47009 * 180.02562 * 17 15 12 20 20 H 1.48503 * 109.46954 * 299.99905 * 17 15 12 21 21 H 1.08998 * 109.46679 * 307.50998 * 1 2 3 22 22 H 1.08995 * 109.47416 * 67.51463 * 1 2 3 23 23 H 1.08999 * 109.46916 * 187.51523 * 1 2 3 24 24 H 1.08996 * 109.47562 * 270.00793 * 3 2 1 25 25 H 1.09003 * 109.46863 * 30.01141 * 3 2 1 26 26 H 1.08998 * 109.46585 * 150.00217 * 3 2 1 27 27 H 1.07996 * 120.00478 * 172.65556 * 4 2 1 28 28 H 1.07998 * 119.99763 * 142.11998 * 5 4 2 29 29 H 1.08005 * 120.76631 * 179.97438 * 11 9 8 30 30 H 1.08002 * 119.51003 * 180.02562 * 13 12 11 31 31 H 1.09000 * 109.46399 * 59.99946 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1474 -1.1817 -0.0005 5 6 1.4792 -2.3487 0.1486 6 6 0.3816 -2.4254 1.0326 7 8 0.1199 -1.4854 1.7617 8 6 -0.4520 -3.6490 1.0737 9 6 -1.5359 -3.7195 1.9503 10 9 -1.8301 -2.6803 2.7618 11 6 -2.3068 -4.8747 1.9763 12 6 -1.9672 -5.9145 1.1268 13 6 -0.8775 -5.7741 0.2815 14 7 -0.1633 -4.6702 0.2757 15 6 -2.7749 -7.1867 1.1213 16 8 -2.7364 -7.7809 2.4203 17 14 -2.0591 -8.3714 -0.1257 18 1 -0.6521 -8.6798 0.2355 19 1 -2.8553 -9.6248 -0.1315 20 1 -2.0996 -7.7534 -1.4754 21 1 -0.3632 0.6258 0.8152 22 1 -0.3634 0.3930 -0.9495 23 1 -0.3633 -1.0188 0.1344 24 1 2.3791 1.5835 -1.0276 25 1 1.6085 2.0283 0.5140 26 1 3.1499 1.1383 0.5138 27 1 3.2207 -1.1855 -0.1201 28 1 1.7857 -3.2214 -0.4087 29 1 -3.1517 -4.9601 2.6437 30 1 -0.6111 -6.5836 -0.3820 31 1 -3.8075 -6.9603 0.8558 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380510240.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 2 2020 08:09:56 Heat of formation + Delta-G solvation = -70.277129 kcal Electronic energy + Delta-G solvation = -18495.065307 eV Core-core repulsion = 15271.558402 eV Total energy + Delta-G solvation = -3223.506905 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.04190 -41.61361 -40.52162 -37.94492 -35.02147 -32.68319 -32.48246 -31.35320 -29.21875 -27.62734 -25.90599 -24.64095 -23.24413 -22.06809 -19.92503 -18.61293 -18.49121 -18.00098 -17.25513 -16.91919 -16.60125 -16.21701 -15.70470 -15.53671 -15.38407 -14.91736 -14.53615 -14.21708 -14.14849 -13.84288 -13.52537 -13.38495 -13.22548 -13.00402 -12.21149 -12.05651 -11.99470 -11.82113 -11.21579 -10.96467 -10.67688 -10.29251 -9.89536 -8.48742 -8.43881 -7.86030 -0.53444 -0.03496 0.54366 1.40481 1.55822 1.58136 1.91847 2.21991 2.48113 2.79406 2.90842 3.16146 3.48123 3.78595 3.90663 3.99251 4.17050 4.34609 4.40930 4.48015 4.54634 4.70403 4.83936 4.87239 4.97367 5.02917 5.16467 5.18207 5.35414 5.41303 5.55621 6.03766 6.30149 6.55603 7.01167 7.61219 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.039104 B = 0.005968 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.861234 B = 4690.911223 C = 5199.321010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.563 5.563 3 C 0.065 3.935 4 C 0.292 3.708 5 C -0.451 4.451 6 C 0.427 3.573 7 O -0.531 6.531 8 C -0.003 4.003 9 C 0.083 3.917 10 F -0.122 7.122 11 C -0.125 4.125 12 C -0.076 4.076 13 C 0.054 3.946 14 N -0.408 5.408 15 C -0.040 4.040 16 O -0.936 6.936 17 Si 0.960 3.040 18 H -0.276 1.276 19 H -0.292 1.292 20 H -0.237 1.237 21 H 0.062 0.938 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.200 0.800 28 H 0.146 0.854 29 H 0.132 0.868 30 H 0.175 0.825 31 H -0.010 1.010 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.866 18.783 -10.629 24.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.258 5.258 3 C -0.076 4.076 4 C 0.151 3.849 5 C -0.479 4.479 6 C 0.321 3.679 7 O -0.419 6.419 8 C -0.141 4.141 9 C 0.061 3.939 10 F -0.100 7.100 11 C -0.152 4.152 12 C -0.079 4.079 13 C -0.106 4.106 14 N -0.118 5.118 15 C -0.156 4.156 16 O -0.886 6.886 17 Si 0.787 3.213 18 H -0.201 1.201 19 H -0.218 1.218 20 H -0.162 1.162 21 H 0.081 0.919 22 H 0.095 0.905 23 H 0.093 0.907 24 H 0.107 0.893 25 H 0.095 0.905 26 H 0.113 0.887 27 H 0.216 0.784 28 H 0.164 0.836 29 H 0.150 0.850 30 H 0.191 0.809 31 H 0.007 0.993 Dipole moment (debyes) X Y Z Total from point charges 12.692 18.995 -11.165 25.427 hybrid contribution -1.673 -0.369 1.694 2.409 sum 11.019 18.626 -9.471 23.623 Atomic orbital electron populations 1.22505 0.79513 1.04782 1.01188 1.47298 1.07236 1.06705 1.64511 1.22290 0.97634 0.83484 1.04159 1.22735 0.98487 0.83590 0.80102 1.21047 1.08250 1.01475 1.17164 1.18109 0.82530 0.82440 0.84789 1.90678 1.70718 1.37362 1.43175 1.22544 0.96568 0.98700 0.96289 1.19038 0.97070 0.85383 0.92401 1.91491 1.92576 1.55646 1.70313 1.21512 1.01279 0.91747 1.00638 1.22956 0.96378 0.97528 0.91067 1.22899 0.92593 0.96090 0.99041 1.67601 1.26631 0.98922 1.18629 1.23876 0.94780 0.92621 1.04329 1.94926 1.94150 1.77208 1.22283 0.86028 0.78646 0.80696 0.75908 1.20145 1.21850 1.16153 0.91902 0.90538 0.90702 0.89348 0.90545 0.88682 0.78356 0.83618 0.85028 0.80876 0.99319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.46 8.58 127.77 1.10 2.55 16 2 N -0.56 -10.00 3.13 -756.05 -2.36 -12.36 16 3 C 0.07 0.53 10.74 127.77 1.37 1.90 16 4 C 0.29 5.42 9.99 83.30 0.83 6.25 16 5 C -0.45 -12.80 8.99 22.30 0.20 -12.60 16 6 C 0.43 16.04 4.84 25.61 0.12 16.17 16 7 O -0.53 -21.00 11.92 -4.68 -0.06 -21.05 16 8 C 0.00 -0.13 6.73 41.95 0.28 0.15 16 9 C 0.08 3.92 7.31 22.75 0.17 4.08 16 10 F -0.12 -5.60 15.55 44.97 0.70 -4.90 16 11 C -0.13 -6.49 9.75 22.49 0.22 -6.27 16 12 C -0.08 -4.06 5.44 -19.71 -0.11 -4.17 16 13 C 0.05 2.46 9.84 84.84 0.83 3.29 16 14 N -0.41 -17.53 9.45 -184.70 -1.74 -19.28 16 15 C -0.04 -2.36 2.91 71.24 0.21 -2.16 16 16 O -0.94 -70.29 17.91 -148.98 -2.67 -72.96 16 17 Si 0.96 45.24 25.35 68.60 1.74 46.98 16 18 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 20 H -0.24 -8.89 7.11 99.48 0.71 -8.19 16 21 H 0.06 1.53 7.96 -2.39 -0.02 1.51 16 22 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.07 2.33 3.64 -10.94 -0.04 2.29 16 24 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 25 H 0.08 0.63 8.07 -2.39 -0.02 0.61 16 26 H 0.09 0.44 8.04 -2.39 -0.02 0.42 16 27 H 0.20 1.61 8.06 -2.91 -0.02 1.58 16 28 H 0.15 4.16 7.58 -2.91 -0.02 4.13 16 29 H 0.13 6.94 8.06 -2.91 -0.02 6.91 16 30 H 0.17 7.08 4.89 -2.91 -0.01 7.07 16 31 H -0.01 -0.59 7.96 -2.39 -0.02 -0.61 16 Total: -1.00 -85.41 270.29 2.72 -82.69 By element: Atomic # 1 Polarization: -10.21 SS G_CDS: 1.88 Total: -8.33 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 5.23 Total: 9.21 kcal Atomic # 7 Polarization: -27.53 SS G_CDS: -4.11 Total: -31.64 kcal Atomic # 8 Polarization: -91.29 SS G_CDS: -2.72 Total: -94.01 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 0.70 Total: -4.90 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.74 Total: 46.98 kcal Total: -85.41 2.72 -82.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380510240.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.414 kcal (2) G-P(sol) polarization free energy of solvation -85.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds