Wall clock time and date at job start Thu Apr 2 2020 08:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86304 * 109.47349 * 2 1 4 4 H 1.48494 * 109.47278 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47072 * 300.00233 * 3 2 1 6 6 H 1.48503 * 109.46928 * 60.00060 * 3 2 1 7 7 C 1.50703 * 109.47055 * 240.00160 * 2 1 3 8 8 C 1.34664 * 125.98870 * 330.00055 * 7 2 1 9 9 N 1.36886 * 106.82040 * 179.97438 * 8 7 2 10 10 C 1.46498 * 126.39907 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47118 * 90.00515 * 10 9 8 12 12 S 1.60617 * 125.69501 * 0.02562 * 11 10 9 13 13 C 1.82015 * 95.58095 * 180.02562 * 12 11 10 14 14 N 1.46660 * 104.31726 * 0.02562 * 13 12 11 15 15 C 1.27147 * 113.26329 * 359.68761 * 14 13 12 16 16 Cl 1.73601 * 120.88865 * 180.28118 * 15 14 13 17 17 C 1.35042 * 107.20007 * 0.02562 * 9 8 7 18 18 N 1.30500 * 108.70247 * 359.76195 * 17 9 8 19 19 H 0.96703 * 114.00193 * 300.00032 * 1 2 3 20 20 H 1.09002 * 109.46984 * 120.00249 * 2 1 3 21 21 H 1.07999 * 126.59198 * 359.94368 * 8 7 2 22 22 H 1.08998 * 109.46904 * 210.00257 * 10 9 8 23 23 H 1.08997 * 109.47345 * 329.99885 * 10 9 8 24 24 H 1.08999 * 110.45836 * 118.71523 * 13 12 11 25 25 H 1.09001 * 110.46151 * 241.28999 * 13 12 11 26 26 H 1.08005 * 125.64659 * 180.02562 * 17 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 3.5350 1.7564 0.0006 5 1 1.5550 2.4565 -1.2124 6 1 1.5551 2.4565 1.2125 7 6 1.9313 -0.7104 -1.2305 8 6 1.3054 -1.7125 -1.8766 9 7 2.1031 -2.0621 -2.9327 10 6 1.8296 -3.1101 -3.9191 11 6 1.0653 -2.5226 -5.0774 12 16 0.6148 -0.9876 -5.2209 13 6 -0.2018 -1.1928 -6.8346 14 7 -0.0269 -2.6141 -7.1514 15 6 0.6149 -3.2524 -6.2584 16 17 0.9410 -4.9482 -6.4360 17 6 3.1897 -1.2612 -2.8947 18 7 3.0778 -0.4522 -1.8768 19 1 -0.3934 0.4417 0.7651 20 1 1.7923 -0.5139 0.8900 21 1 0.3566 -2.1556 -1.6122 22 1 2.7711 -3.5255 -4.2784 23 1 1.2376 -3.8994 -3.4560 24 1 -1.2610 -0.9469 -6.7595 25 1 0.2821 -0.5716 -7.5883 26 1 4.0128 -1.2834 -3.5936 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725687832.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 2 2020 08:21:18 Heat of formation + Delta-G solvation = 201.986430 kcal Electronic energy + Delta-G solvation = -15042.117082 eV Core-core repulsion = 12282.479122 eV Total energy + Delta-G solvation = -2759.637961 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 260.013 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.47045 -41.11734 -38.25325 -37.86679 -36.48762 -32.46889 -31.22013 -29.46521 -27.69858 -26.11026 -23.16488 -22.51423 -21.47701 -19.86960 -18.70828 -18.33985 -18.05953 -17.75591 -16.78160 -16.37819 -15.90578 -15.70963 -15.28090 -14.97967 -14.77682 -14.66671 -14.39746 -14.20269 -13.74059 -12.80578 -12.74385 -12.38600 -12.35313 -12.20144 -11.98468 -11.97023 -11.26258 -11.09358 -10.46634 -9.47813 -3.05161 -1.47806 -0.89981 -0.26204 0.04738 0.62957 0.94509 1.21998 1.51401 1.54823 1.64134 1.86832 2.10812 2.18228 2.52927 3.04251 3.32611 3.35908 3.69607 3.74334 3.94594 3.99484 4.10603 4.54534 4.66502 4.71683 4.85966 5.39544 5.88967 6.74857 6.87354 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.034578 B = 0.006331 C = 0.005940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.561758 B = 4421.703875 C = 4712.792589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.026 4.026 3 Si 0.984 3.016 4 H -0.282 1.282 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.013 4.013 8 C -0.009 4.009 9 N -0.487 5.487 10 C 0.153 3.847 11 C -0.183 4.183 12 S 0.709 5.291 13 C -0.098 4.098 14 N -0.383 5.383 15 C 0.174 3.826 16 Cl 0.043 6.957 17 C 0.209 3.791 18 N -0.523 5.523 19 H 0.405 0.595 20 H 0.088 0.912 21 H 0.208 0.792 22 H 0.194 0.806 23 H 0.185 0.815 24 H 0.250 0.750 25 H 0.252 0.748 26 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.039 -1.786 -9.002 10.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.139 4.139 3 Si 0.812 3.188 4 H -0.207 1.207 5 H -0.194 1.194 6 H -0.201 1.201 7 C -0.138 4.138 8 C -0.139 4.139 9 N -0.175 5.175 10 C 0.028 3.972 11 C -0.310 4.310 12 S 0.946 5.054 13 C -0.335 4.335 14 N -0.098 5.098 15 C -0.040 4.040 16 Cl 0.072 6.928 17 C -0.073 4.073 18 N -0.242 5.242 19 H 0.256 0.744 20 H 0.106 0.894 21 H 0.225 0.775 22 H 0.211 0.789 23 H 0.202 0.798 24 H 0.265 0.735 25 H 0.267 0.733 26 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -3.445 0.046 -9.595 10.195 hybrid contribution -0.339 -1.948 0.290 1.999 sum -3.784 -1.902 -9.305 10.223 Atomic orbital electron populations 1.86218 1.16423 1.82264 1.51575 1.23378 0.85483 1.08536 0.96534 0.85114 0.78890 0.75725 0.79109 1.20689 1.19389 1.20062 1.20034 0.93947 1.00173 0.99659 1.22757 0.99824 1.00365 0.90962 1.45774 1.18675 1.29700 1.23329 1.21267 1.04653 0.89042 0.82207 1.30533 0.93140 1.07461 0.99870 1.84775 1.18629 0.91724 1.10322 1.28677 1.13593 0.91479 0.99776 1.72725 1.07752 1.06360 1.22936 1.24502 0.96432 0.93840 0.89219 1.98635 1.92515 1.04677 1.96995 1.25987 0.92968 0.89379 0.99010 1.70048 1.19301 1.26877 1.08017 0.74431 0.89422 0.77483 0.78901 0.79826 0.73480 0.73305 0.73242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 15.82 12.49 -148.98 -1.86 13.96 15 2 C -0.03 0.67 3.05 71.24 0.22 0.88 15 3 Si 0.98 -19.39 27.57 68.60 1.89 -17.50 15 4 H -0.28 3.77 7.11 99.48 0.71 4.47 15 5 H -0.27 4.89 7.11 99.48 0.71 5.59 15 6 H -0.28 4.79 7.11 99.48 0.71 5.49 15 7 C -0.01 0.38 6.08 41.39 0.25 0.63 15 8 C -0.01 0.35 11.05 83.08 0.92 1.27 15 9 N -0.49 21.54 1.97 -533.16 -1.05 20.49 15 10 C 0.15 -8.12 6.35 85.63 0.54 -7.57 15 11 C -0.18 9.97 6.34 27.68 0.18 10.14 15 12 S 0.71 -40.67 21.72 -56.49 -1.23 -41.90 15 13 C -0.10 5.67 8.36 127.74 1.07 6.74 15 14 N -0.38 18.08 11.32 -344.31 -3.90 14.18 15 15 C 0.17 -8.40 7.40 87.37 0.65 -7.76 15 16 Cl 0.04 -1.74 28.87 -2.72 -0.08 -1.82 15 17 C 0.21 -8.05 12.55 180.26 2.26 -5.79 15 18 N -0.52 13.98 9.93 -188.32 -1.87 12.11 15 19 H 0.40 -13.74 8.74 -74.05 -0.65 -14.38 15 20 H 0.09 -2.32 7.96 -2.39 -0.02 -2.34 15 21 H 0.21 -8.50 8.06 -2.91 -0.02 -8.52 15 22 H 0.19 -11.13 8.14 -2.39 -0.02 -11.15 15 23 H 0.18 -10.28 8.14 -2.39 -0.02 -10.30 15 24 H 0.25 -15.66 8.14 -2.39 -0.02 -15.67 15 25 H 0.25 -15.86 8.14 -2.39 -0.02 -15.88 15 26 H 0.25 -11.68 8.06 -2.91 -0.02 -11.71 15 Total: 1.00 -75.64 261.76 -0.68 -76.32 By element: Atomic # 1 Polarization: -75.72 SS G_CDS: 1.33 Total: -74.39 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 6.08 Total: -1.46 kcal Atomic # 7 Polarization: 53.61 SS G_CDS: -6.82 Total: 46.79 kcal Atomic # 8 Polarization: 15.82 SS G_CDS: -1.86 Total: 13.96 kcal Atomic # 14 Polarization: -19.39 SS G_CDS: 1.89 Total: -17.50 kcal Atomic # 16 Polarization: -40.67 SS G_CDS: -1.23 Total: -41.90 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.08 Total: -1.82 kcal Total: -75.64 -0.68 -76.32 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725687832.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 278.303 kcal (2) G-P(sol) polarization free energy of solvation -75.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 202.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 201.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds