Wall clock time and date at job start Thu Apr 2 2020 09:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28472 * 124.88449 * 2 1 4 4 C 1.31817 * 110.07073 * 180.30559 * 3 2 1 5 5 C 1.47709 * 126.51577 * 179.72101 * 4 3 2 6 6 O 1.21573 * 119.99836 * 175.06097 * 5 4 3 7 7 N 1.34781 * 120.00052 * 355.06619 * 5 4 3 8 8 C 1.47235 * 121.71594 * 185.33196 * 7 5 4 9 9 C 1.53530 * 109.15572 * 131.38824 * 8 7 5 10 10 N 1.47461 * 109.70926 * 48.72324 * 9 8 7 11 11 C 1.48072 * 109.71461 * 48.84643 * 10 9 8 12 12 C 1.55578 * 106.96843 * 270.01862 * 11 10 9 13 13 C 1.48379 * 121.71800 * 5.61007 * 7 5 4 14 14 H 1.09001 * 114.03236 * 5.19873 * 13 7 5 15 15 C 1.48807 * 108.52566 * 294.31450 * 10 9 8 16 16 C 1.41497 * 106.96383 * 359.71782 * 4 3 2 17 17 C 1.35036 * 124.88396 * 179.82096 * 2 1 3 18 18 C 1.50700 * 126.38852 * 359.97246 * 17 2 1 19 19 O 1.42897 * 109.47018 * 29.70572 * 18 17 2 20 20 Si 1.86295 * 109.47482 * 149.71055 * 18 17 2 21 21 H 1.48500 * 109.47289 * 299.99994 * 20 18 17 22 22 H 1.48502 * 109.46871 * 59.99838 * 20 18 17 23 23 H 1.48498 * 109.47193 * 179.97438 * 20 18 17 24 24 H 1.09001 * 109.47566 * 270.17413 * 1 2 3 25 25 H 1.08994 * 109.47330 * 30.17933 * 1 2 3 26 26 H 1.09004 * 109.47117 * 150.17480 * 1 2 3 27 27 H 1.09005 * 109.48090 * 251.43554 * 8 7 5 28 28 H 1.08994 * 109.48242 * 11.47600 * 8 7 5 29 29 H 1.09003 * 109.58573 * 288.57251 * 9 8 7 30 30 H 1.09002 * 109.33620 * 168.71597 * 9 8 7 31 31 H 1.08999 * 109.98892 * 29.29613 * 11 10 9 32 32 H 1.08991 * 109.98641 * 150.61200 * 11 10 9 33 33 H 1.08993 * 110.55382 * 242.15570 * 12 11 10 34 34 H 1.08993 * 110.96346 * 119.21599 * 12 11 10 35 35 H 1.09001 * 110.97454 * 316.40507 * 15 10 9 36 36 H 1.09003 * 111.00858 * 192.63771 * 15 10 9 37 37 H 1.08003 * 127.24924 * 180.02562 * 16 4 3 38 38 H 1.09000 * 109.46595 * 269.71114 * 18 17 2 39 39 H 0.96709 * 113.99869 * 60.00390 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0539 0.0000 4 6 3.4741 0.7168 -0.0066 5 6 4.6273 1.6398 -0.0146 6 8 5.7578 1.2008 0.0704 7 7 4.4262 2.9687 -0.1161 8 6 5.5480 3.9137 -0.2439 9 6 5.2645 4.8781 -1.4044 10 7 3.8997 5.4218 -1.2770 11 6 3.6844 5.9128 0.1032 12 6 3.1208 4.7193 0.9269 13 6 3.0633 3.5550 -0.0986 14 1 2.2710 2.8310 0.0914 15 6 2.9287 4.3080 -1.4529 16 6 3.5272 -0.6971 -0.0045 17 6 2.2372 -1.1077 0.0035 18 6 1.7534 -2.5349 0.0085 19 8 0.4920 -2.6126 -0.6584 20 14 2.9899 -3.6131 -0.8742 21 1 3.1417 -3.1469 -2.2759 22 1 4.3008 -3.5323 -0.1811 23 1 2.5134 -5.0195 -0.8686 24 1 -0.3634 0.0031 1.0276 25 1 -0.3634 0.8883 -0.5166 26 1 -0.3633 -0.8916 -0.5111 27 1 5.6562 4.4770 0.6830 28 1 6.4667 3.3624 -0.4440 29 1 5.3560 4.3468 -2.3517 30 1 5.9843 5.6962 -1.3778 31 1 4.6297 6.2452 0.5322 32 1 2.9675 6.7337 0.0990 33 1 2.1221 4.9485 1.2985 34 1 3.7860 4.4665 1.7524 35 1 3.2169 3.6671 -2.2862 36 1 1.9167 4.6896 -1.5885 37 1 4.4108 -1.3181 -0.0080 38 1 1.6421 -2.8771 1.0374 39 1 0.5161 -2.3227 -1.5807 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119966868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 2 2020 09:16:16 Heat of formation + Delta-G solvation = 49.950436 kcal Electronic energy + Delta-G solvation = -23365.662318 eV Core-core repulsion = 20005.702428 eV Total energy + Delta-G solvation = -3359.959889 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.90590 -41.89554 -39.44145 -38.33236 -34.97302 -34.42155 -33.23667 -32.56312 -30.18194 -28.95106 -27.83953 -26.90474 -24.89709 -23.81337 -22.45236 -21.78370 -21.59901 -20.10956 -18.86900 -17.90779 -17.65856 -17.28676 -17.10581 -16.57973 -16.20059 -16.10924 -15.81847 -15.76927 -15.34574 -15.21307 -14.78460 -14.46664 -14.12682 -13.96038 -13.69795 -13.60519 -13.42445 -12.89119 -12.65187 -12.55144 -12.29017 -12.22937 -12.16463 -12.06759 -11.89197 -11.44821 -11.06397 -10.90090 -10.31876 -10.15245 -10.00319 -9.14664 0.46340 0.72515 1.03703 1.36016 1.37256 1.49476 1.82763 1.91268 2.40126 2.89050 2.98856 3.16822 3.25739 3.59179 3.69671 3.79695 3.88621 4.04066 4.05622 4.10970 4.16205 4.21742 4.28245 4.38171 4.43681 4.48759 4.53992 4.55237 4.66734 4.77681 4.82279 4.88395 4.90963 4.94635 5.02329 5.27326 5.45173 5.66105 5.77764 5.88789 6.06346 6.34866 6.78644 7.20396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.263 5.263 3 N -0.260 5.260 4 C -0.007 4.007 5 C 0.607 3.393 6 O -0.531 6.531 7 N -0.603 5.603 8 C 0.079 3.921 9 C 0.024 3.976 10 N -0.500 5.500 11 C 0.026 3.974 12 C -0.161 4.161 13 C 0.082 3.918 14 H 0.161 0.839 15 C 0.022 3.978 16 C -0.180 4.180 17 C -0.015 4.015 18 C -0.056 4.056 19 O -0.538 6.538 20 Si 0.970 3.030 21 H -0.248 1.248 22 H -0.243 1.243 23 H -0.246 1.246 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.121 0.879 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.167 0.833 38 H 0.130 0.870 39 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.927 -0.802 -0.410 5.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.051 5.051 3 N -0.097 5.097 4 C -0.165 4.165 5 C 0.394 3.606 6 O -0.405 6.405 7 N -0.337 5.337 8 C -0.044 4.044 9 C -0.105 4.105 10 N -0.221 5.221 11 C -0.102 4.102 12 C -0.201 4.201 13 C -0.023 4.023 14 H 0.177 0.823 15 C -0.107 4.107 16 C -0.208 4.208 17 C -0.140 4.140 18 C -0.166 4.166 19 O -0.343 6.343 20 Si 0.788 3.212 21 H -0.171 1.171 22 H -0.166 1.166 23 H -0.169 1.169 24 H 0.104 0.896 25 H 0.112 0.888 26 H 0.139 0.861 27 H 0.090 0.910 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.184 0.816 38 H 0.148 0.852 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -4.798 -0.409 -0.645 4.859 hybrid contribution 0.418 -0.581 0.557 0.907 sum -4.381 -0.990 -0.087 4.492 Atomic orbital electron populations 1.22679 0.72386 1.06775 1.05328 1.45518 1.08043 1.02134 1.49411 1.73189 1.02970 1.13237 1.20285 1.21715 0.90570 0.93755 1.10496 1.16917 0.86630 0.80888 0.76193 1.90812 1.22861 1.76617 1.50210 1.48532 1.07966 1.05106 1.72072 1.22368 0.90583 0.91896 0.99594 1.22964 0.91824 0.97503 0.98255 1.65997 1.03032 1.28561 1.24473 1.23368 1.01606 0.97587 0.87645 1.23548 1.02703 0.95229 0.98631 1.24526 0.85400 0.96546 0.95810 0.82296 1.23882 0.98002 0.91993 0.96790 1.21535 0.96538 0.93894 1.08792 1.21914 0.91208 0.91593 1.09287 1.24818 0.94010 0.93357 1.04452 1.86488 1.29806 1.88713 1.29289 0.85403 0.77169 0.78551 0.80032 1.17097 1.16581 1.16903 0.89630 0.88782 0.86075 0.90980 0.88496 0.90033 0.88935 0.90830 0.89635 0.89933 0.90563 0.89991 0.88843 0.81585 0.85199 0.77155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.25 11.00 59.84 0.66 0.41 16 2 N -0.26 0.05 3.70 -63.85 -0.24 -0.19 16 3 N -0.26 -0.44 8.40 33.42 0.28 -0.16 16 4 C -0.01 -0.02 6.93 -82.76 -0.57 -0.60 16 5 C 0.61 2.98 7.74 -12.39 -0.10 2.88 16 6 O -0.53 -4.14 16.51 5.30 0.09 -4.05 16 7 N -0.60 -1.57 2.69 -162.08 -0.44 -2.00 16 8 C 0.08 0.12 5.75 -3.37 -0.02 0.10 16 9 C 0.02 0.01 5.93 -3.24 -0.02 -0.01 16 10 N -0.50 -0.48 5.97 -227.80 -1.36 -1.84 16 11 C 0.03 -0.01 6.25 -1.81 -0.01 -0.02 16 12 C -0.16 0.03 6.06 -24.16 -0.15 -0.11 16 13 C 0.08 0.06 4.18 -64.35 -0.27 -0.21 16 14 H 0.16 0.15 4.43 -56.46 -0.25 -0.10 16 15 C 0.02 0.01 6.53 -1.42 -0.01 0.00 16 16 C -0.18 -0.39 9.35 -39.36 -0.37 -0.76 16 17 C -0.01 0.00 6.18 -82.20 -0.51 -0.51 16 18 C -0.06 0.14 2.99 36.01 0.11 0.25 16 19 O -0.54 1.80 10.02 -35.23 -0.35 1.44 16 20 Si 0.97 -1.85 26.63 -169.99 -4.53 -6.38 16 21 H -0.25 0.24 7.11 56.52 0.40 0.64 16 22 H -0.24 0.20 6.87 56.52 0.39 0.58 16 23 H -0.25 0.25 7.11 56.52 0.40 0.65 16 24 H 0.09 -0.34 8.14 -51.93 -0.42 -0.77 16 25 H 0.09 -0.44 8.14 -51.93 -0.42 -0.86 16 26 H 0.12 -0.61 4.99 -51.93 -0.26 -0.87 16 27 H 0.07 0.06 6.24 -51.93 -0.32 -0.27 16 28 H 0.10 0.24 7.20 -51.93 -0.37 -0.13 16 29 H 0.08 0.08 7.91 -51.93 -0.41 -0.33 16 30 H 0.09 -0.06 8.14 -51.93 -0.42 -0.48 16 31 H 0.07 -0.04 7.02 -51.93 -0.36 -0.41 16 32 H 0.09 -0.05 8.14 -51.93 -0.42 -0.48 16 33 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 34 H 0.08 0.05 7.50 -51.93 -0.39 -0.34 16 35 H 0.08 0.10 7.84 -51.93 -0.41 -0.30 16 36 H 0.09 -0.05 8.14 -51.93 -0.42 -0.47 16 37 H 0.17 0.27 6.86 -52.48 -0.36 -0.09 16 38 H 0.13 -0.45 7.96 -51.93 -0.41 -0.86 16 39 H 0.38 -2.36 8.37 45.56 0.38 -1.97 16 LS Contribution 299.07 15.07 4.51 4.51 Total: 0.00 -6.81 299.07 -7.81 -14.61 By element: Atomic # 1 Polarization: -2.87 SS G_CDS: -4.52 Total: -7.38 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -1.25 Total: 1.43 kcal Atomic # 7 Polarization: -2.44 SS G_CDS: -1.75 Total: -4.19 kcal Atomic # 8 Polarization: -2.34 SS G_CDS: -0.27 Total: -2.61 kcal Atomic # 14 Polarization: -1.85 SS G_CDS: -4.53 Total: -6.38 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -6.81 -7.81 -14.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119966868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.565 kcal (2) G-P(sol) polarization free energy of solvation -6.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds