Wall clock time and date at job start Tue Mar 17 2020 21:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86300 * 109.46759 * 2 1 4 4 H 1.48501 * 109.47442 * 59.99654 * 3 2 1 5 5 H 1.48507 * 109.46995 * 179.97438 * 3 2 1 6 6 H 1.48509 * 109.47065 * 299.99560 * 3 2 1 7 7 C 1.50695 * 109.47451 * 239.99567 * 2 1 3 8 8 C 1.38234 * 120.00093 * 300.00257 * 7 2 1 9 9 C 1.38231 * 119.99938 * 180.02562 * 8 7 2 10 10 C 1.38241 * 120.00383 * 0.02562 * 9 8 7 11 11 C 1.50693 * 120.00351 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47424 * 89.99725 * 11 10 9 13 13 O 1.21283 * 120.00145 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00312 * 180.02562 * 12 11 10 15 15 C 1.47293 * 121.86685 * 359.97095 * 14 12 11 16 16 C 1.53040 * 109.32685 * 131.58581 * 15 14 12 17 17 N 1.47212 * 110.17388 * 48.84891 * 16 15 14 18 18 H 1.00894 * 111.16491 * 172.20582 * 17 16 15 19 19 C 1.47909 * 109.05783 * 48.52334 * 17 16 15 20 20 C 1.54073 * 106.95547 * 269.82433 * 19 17 16 21 21 C 1.48446 * 121.87434 * 179.97438 * 14 12 11 22 22 H 1.08998 * 114.07465 * 5.68128 * 21 14 12 23 23 C 1.48643 * 107.85356 * 294.33015 * 17 16 15 24 24 C 1.38236 * 119.99543 * 0.24712 * 10 9 8 25 25 C 1.38233 * 119.99904 * 120.01786 * 7 2 1 26 26 H 0.96700 * 113.99999 * 300.00039 * 1 2 3 27 27 H 1.09000 * 109.46992 * 119.99351 * 2 1 3 28 28 H 1.07997 * 119.99638 * 359.97438 * 8 7 2 29 29 H 1.08000 * 120.00206 * 179.97438 * 9 8 7 30 30 H 1.09001 * 109.46817 * 329.99556 * 11 10 9 31 31 H 1.09000 * 109.47326 * 209.99750 * 11 10 9 32 32 H 1.09000 * 109.49114 * 251.53854 * 15 14 12 33 33 H 1.08996 * 109.49689 * 11.60028 * 15 14 12 34 34 H 1.08997 * 109.35613 * 169.06223 * 16 15 14 35 35 H 1.09006 * 109.35504 * 288.78035 * 16 15 14 36 36 H 1.09003 * 109.95920 * 150.44940 * 19 17 16 37 37 H 1.08995 * 109.96657 * 29.20006 * 19 17 16 38 38 H 1.09005 * 110.41863 * 242.60232 * 20 19 17 39 39 H 1.08997 * 110.41971 * 120.13480 * 20 19 17 40 40 H 1.08997 * 110.93178 * 316.42971 * 23 17 16 41 41 H 1.09007 * 110.92688 * 192.77565 * 23 17 16 42 42 H 1.07998 * 120.00051 * 179.73069 * 24 10 9 43 43 H 1.08003 * 120.00311 * 0.02562 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 1.5549 2.4566 1.2124 5 1 3.5350 1.7566 0.0006 6 1 1.5550 2.4565 -1.2126 7 6 1.9315 -0.7105 -1.2303 8 6 1.5975 -2.0339 -1.4491 9 6 2.0588 -2.6857 -2.5774 10 6 2.8546 -2.0143 -3.4868 11 6 3.3579 -2.7251 -4.7166 12 6 2.3664 -2.5520 -5.8381 13 8 1.3506 -1.9146 -5.6566 14 7 2.6078 -3.1063 -7.0427 15 6 3.8272 -3.8887 -7.3084 16 6 3.4459 -5.2054 -7.9889 17 7 2.5316 -4.9493 -9.1138 18 1 2.3706 -5.7883 -9.6506 19 6 3.0860 -3.8617 -9.9489 20 6 2.5278 -2.5382 -9.3916 21 6 1.6597 -2.9626 -8.1759 22 1 0.8201 -2.2983 -7.9717 23 6 1.2610 -4.4164 -8.5562 24 6 3.1931 -0.6925 -3.2652 25 6 2.7265 -0.0388 -2.1401 26 1 -0.3933 0.4417 0.7650 27 1 1.7924 -0.5137 0.8900 28 1 0.9769 -2.5588 -0.7379 29 1 1.7983 -3.7198 -2.7481 30 1 3.4787 -3.7863 -4.4989 31 1 4.3184 -2.3032 -5.0125 32 1 4.4890 -3.3199 -7.9615 33 1 4.3366 -4.0989 -6.3680 34 1 4.3467 -5.6944 -8.3597 35 1 2.9530 -5.8559 -7.2664 36 1 2.7723 -3.9911 -10.9848 37 1 4.1742 -3.8622 -9.8864 38 1 1.9141 -2.0386 -10.1412 39 1 3.3413 -1.8879 -9.0698 40 1 0.9563 -4.9797 -7.6742 41 1 0.4734 -4.4196 -9.3098 42 1 3.8183 -0.1692 -3.9735 43 1 2.9880 0.9950 -1.9689 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861860109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 21:26:07 Heat of formation + Delta-G solvation = 104.379686 kcal Electronic energy + Delta-G solvation = -23902.685330 eV Core-core repulsion = 20534.055612 eV Total energy + Delta-G solvation = -3368.629718 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -45.88654 -42.27777 -41.01614 -38.39466 -37.97822 -36.45688 -35.07040 -33.39494 -32.79606 -31.87937 -30.43671 -27.73018 -26.72018 -25.23494 -24.72511 -24.70015 -22.94294 -22.54704 -21.79293 -20.28277 -19.65241 -19.31541 -19.15691 -18.80450 -18.29689 -18.15507 -17.50078 -17.17740 -16.98860 -16.77277 -16.55887 -16.35722 -16.21003 -15.81877 -15.68532 -15.39560 -15.19324 -15.16070 -15.06593 -14.90039 -14.80116 -14.41865 -14.34957 -14.22230 -13.92800 -13.03870 -12.88524 -12.54337 -12.42707 -12.40392 -11.83508 -11.07360 -10.69209 -10.44260 -1.57375 -0.69571 -0.36645 -0.17374 -0.07111 0.17357 0.36368 0.49537 0.57095 0.81257 0.84877 0.87427 1.24722 1.28027 1.35117 1.46013 1.56814 1.68161 1.71474 1.78757 1.90588 2.09916 2.16217 2.17585 2.20974 2.40915 2.44056 2.57507 2.67386 2.71127 2.78447 2.90050 3.06446 3.15458 3.19138 3.26936 3.27448 3.59933 3.69793 3.83328 4.10531 4.22509 4.37984 4.54648 4.63480 4.77805 5.15239 5.50327 5.91541 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035685 B = 0.003535 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.453904 B = 7919.485713 C = 7983.942795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.085 4.085 3 Si 0.944 3.056 4 H -0.253 1.253 5 H -0.250 1.250 6 H -0.248 1.248 7 C -0.063 4.063 8 C -0.086 4.086 9 C -0.103 4.103 10 C -0.082 4.082 11 C -0.097 4.097 12 C 0.524 3.476 13 O -0.493 6.493 14 N -0.638 5.638 15 C 0.085 3.915 16 C -0.019 4.019 17 N -0.392 5.392 18 H 0.436 0.564 19 C -0.010 4.010 20 C -0.156 4.156 21 C 0.134 3.866 22 H 0.162 0.838 23 C -0.018 4.018 24 C -0.097 4.097 25 C -0.120 4.120 26 H 0.384 0.616 27 H 0.080 0.920 28 H 0.130 0.870 29 H 0.121 0.879 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.143 0.857 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.140 0.860 41 H 0.146 0.854 42 H 0.124 0.876 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.403 -14.469 -20.164 25.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.196 4.196 3 Si 0.766 3.234 4 H -0.177 1.177 5 H -0.173 1.173 6 H -0.171 1.171 7 C -0.063 4.063 8 C -0.104 4.104 9 C -0.121 4.121 10 C -0.083 4.083 11 C -0.137 4.137 12 C 0.313 3.687 13 O -0.364 6.364 14 N -0.376 5.376 15 C -0.039 4.039 16 C -0.142 4.142 17 N 0.029 4.971 18 H 0.273 0.727 19 C -0.131 4.131 20 C -0.194 4.194 21 C 0.030 3.970 22 H 0.180 0.820 23 C -0.141 4.141 24 C -0.115 4.115 25 C -0.137 4.137 26 H 0.231 0.769 27 H 0.097 0.903 28 H 0.148 0.852 29 H 0.139 0.861 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.116 0.884 33 H 0.147 0.853 34 H 0.161 0.839 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.158 0.842 41 H 0.164 0.836 42 H 0.142 0.858 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.299 -13.380 -20.436 24.995 hybrid contribution -0.196 -0.636 0.236 0.706 sum 5.103 -14.017 -20.201 25.111 Atomic orbital electron populations 1.86487 1.16960 1.81788 1.49862 1.24750 0.85963 1.10723 0.98136 0.85760 0.80529 0.75365 0.81738 1.17688 1.17325 1.17092 1.19357 0.97276 0.94458 0.95211 1.20987 0.98116 0.93892 0.97376 1.20938 0.97130 0.99724 0.94268 1.19092 0.99835 0.94442 0.94919 1.20706 0.98436 1.03036 0.91496 1.20927 0.87688 0.78011 0.82045 1.90875 1.27179 1.37566 1.80734 1.49076 1.21702 1.55176 1.11657 1.22230 0.88193 0.89065 1.04378 1.24299 0.97620 1.02350 0.89949 1.46139 1.16526 1.17969 1.16488 0.72677 1.24496 1.04130 0.86759 0.97752 1.23350 1.02300 0.95564 0.98189 1.23273 0.94801 0.93753 0.85182 0.82014 1.25416 0.85278 0.98650 1.04714 1.20825 0.99813 0.93685 0.97141 1.20990 0.98615 0.99643 0.94492 0.76856 0.90251 0.85233 0.86075 0.87478 0.87285 0.88440 0.85293 0.83861 0.84792 0.84491 0.84807 0.86476 0.86953 0.84189 0.83576 0.85822 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 3.86 12.74 -35.23 -0.45 3.41 16 2 C -0.09 0.68 2.81 36.00 0.10 0.78 16 3 Si 0.94 -7.28 25.07 -169.99 -4.26 -11.54 16 4 H -0.25 1.76 7.11 56.52 0.40 2.17 16 5 H -0.25 1.85 7.11 56.52 0.40 2.25 16 6 H -0.25 1.53 7.11 56.52 0.40 1.94 16 7 C -0.06 0.45 5.42 -104.63 -0.57 -0.11 16 8 C -0.09 0.69 9.61 -39.59 -0.38 0.31 16 9 C -0.10 1.06 9.70 -39.58 -0.38 0.68 16 10 C -0.08 0.97 4.37 -104.62 -0.46 0.51 16 11 C -0.10 1.69 4.25 -29.04 -0.12 1.56 16 12 C 0.52 -8.96 7.74 -10.99 -0.09 -9.05 16 13 O -0.49 5.50 15.75 5.55 0.09 5.59 16 14 N -0.64 14.71 2.70 -161.16 -0.44 14.28 16 15 C 0.08 -2.31 5.66 -3.59 -0.02 -2.33 16 16 C -0.02 0.60 5.69 -3.63 -0.02 0.58 16 17 N -0.39 12.62 1.05 -229.65 -0.24 12.38 16 18 H 0.44 -15.19 8.78 -39.29 -0.34 -15.54 16 19 C -0.01 0.32 6.10 -2.71 -0.02 0.30 16 20 C -0.16 4.14 5.96 -24.96 -0.15 4.00 16 21 C 0.13 -3.30 4.47 -64.33 -0.29 -3.59 16 22 H 0.16 -3.49 7.47 -51.93 -0.39 -3.88 16 23 C -0.02 0.53 6.38 -1.55 -0.01 0.52 16 24 C -0.10 0.96 9.70 -39.58 -0.38 0.58 16 25 C -0.12 0.94 8.67 -39.58 -0.34 0.60 16 26 H 0.38 -4.25 8.74 45.56 0.40 -3.85 16 27 H 0.08 -0.77 7.96 -51.93 -0.41 -1.18 16 28 H 0.13 -1.11 8.06 -52.49 -0.42 -1.53 16 29 H 0.12 -1.54 8.06 -52.49 -0.42 -1.97 16 30 H 0.11 -2.16 7.61 -51.93 -0.40 -2.55 16 31 H 0.11 -2.11 8.02 -51.93 -0.42 -2.53 16 32 H 0.10 -2.75 6.17 -51.93 -0.32 -3.07 16 33 H 0.13 -3.50 6.21 -51.93 -0.32 -3.82 16 34 H 0.14 -4.67 8.14 -51.93 -0.42 -5.09 16 35 H 0.13 -4.14 7.86 -51.93 -0.41 -4.55 16 36 H 0.14 -4.29 8.14 -51.93 -0.42 -4.71 16 37 H 0.13 -4.18 6.93 -51.93 -0.36 -4.54 16 38 H 0.12 -3.04 8.14 -51.93 -0.42 -3.46 16 39 H 0.11 -2.80 7.48 -51.93 -0.39 -3.19 16 40 H 0.14 -3.96 7.79 -51.93 -0.40 -4.36 16 41 H 0.15 -4.40 8.14 -51.93 -0.42 -4.82 16 42 H 0.12 -1.50 8.06 -52.49 -0.42 -1.92 16 43 H 0.12 -1.04 4.88 -52.48 -0.26 -1.30 16 LS Contribution 327.83 15.07 4.94 4.94 Total: 1.00 -37.85 327.83 -9.26 -47.11 By element: Atomic # 1 Polarization: -65.72 SS G_CDS: -5.78 Total: -71.50 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -3.13 Total: -4.67 kcal Atomic # 7 Polarization: 27.33 SS G_CDS: -0.68 Total: 26.66 kcal Atomic # 8 Polarization: 9.36 SS G_CDS: -0.36 Total: 9.00 kcal Atomic # 14 Polarization: -7.28 SS G_CDS: -4.26 Total: -11.54 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -37.85 -9.26 -47.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861860109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.490 kcal (2) G-P(sol) polarization free energy of solvation -37.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds