Wall clock time and date at job start Tue Mar 17 2020 21:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38401 * 119.99916 * 2 1 4 4 N 1.32491 * 119.21913 * 359.97438 * 3 2 1 5 5 C 1.32273 * 120.74183 * 179.97438 * 4 3 2 6 6 C 1.38606 * 119.19880 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.72044 * 180.02562 * 6 5 4 8 8 O 1.42902 * 109.47320 * 64.99943 * 7 6 5 9 9 Si 1.86304 * 109.47092 * 185.00441 * 7 6 5 10 10 H 1.48504 * 109.46626 * 299.99732 * 9 7 6 11 11 H 1.48496 * 109.47135 * 59.99806 * 9 7 6 12 12 H 1.48497 * 109.47217 * 180.02562 * 9 7 6 13 13 C 1.38607 * 118.55760 * 0.27892 * 6 5 4 14 14 N 1.32280 * 119.19402 * 359.44348 * 13 6 5 15 15 C 1.46823 * 119.99964 * 180.02562 * 2 1 3 16 16 H 1.09990 * 107.90253 * 171.59048 * 15 2 1 17 17 C 1.52336 * 109.62056 * 289.79114 * 15 2 1 18 18 C 1.52318 * 112.37730 * 76.29568 * 17 15 2 19 19 N 1.46093 * 111.82070 * 48.48534 * 18 17 15 20 20 C 1.46011 * 113.45692 * 67.29201 * 19 18 17 21 21 C 1.52303 * 112.55922 * 285.58364 * 20 19 18 22 22 O 1.41617 * 113.29107 * 319.60661 * 21 20 19 23 23 C 1.42091 * 118.15011 * 42.84009 * 22 21 20 24 24 H 1.09897 * 109.08516 * 188.40250 * 23 22 21 25 25 C 1.46752 * 111.35115 * 300.18211 * 19 18 17 26 26 H 1.08998 * 109.47150 * 93.82959 * 1 2 3 27 27 H 1.09000 * 109.47053 * 213.82818 * 1 2 3 28 28 H 1.08997 * 109.47267 * 333.82732 * 1 2 3 29 29 H 1.08011 * 120.40216 * 180.02562 * 5 4 3 30 30 H 1.09001 * 109.47014 * 305.00184 * 7 6 5 31 31 H 0.96697 * 114.00004 * 179.97438 * 8 7 6 32 32 H 1.07999 * 120.39749 * 179.72249 * 13 6 5 33 33 H 1.08806 * 110.64107 * 200.19716 * 17 15 2 34 34 H 1.10313 * 108.27106 * 316.83610 * 17 15 2 35 35 H 1.09515 * 109.27743 * 287.30842 * 18 17 15 36 36 H 1.09567 * 109.21257 * 169.60329 * 18 17 15 37 37 H 1.09700 * 109.28992 * 164.13469 * 20 19 18 38 38 H 1.09734 * 109.20405 * 46.80703 * 20 19 18 39 39 H 1.10576 * 107.88188 * 200.05016 * 21 20 19 40 40 H 1.09025 * 110.43327 * 84.48000 * 21 20 19 41 41 H 1.08739 * 110.20977 * 305.94748 * 25 19 18 42 42 H 1.09013 * 109.80408 * 184.93321 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1570 1.1986 0.0000 4 7 1.4790 2.3369 -0.0005 5 6 2.1096 3.4996 0.0000 6 6 3.4956 3.5170 0.0016 7 6 4.2490 4.8221 0.0028 8 8 3.9927 5.5191 1.2237 9 14 6.0751 4.4852 -0.1484 10 1 6.5217 3.6547 0.9988 11 1 6.3414 3.7610 -1.4172 12 1 6.8176 5.7712 -0.1466 13 6 4.1735 2.3081 -0.0033 14 7 3.4819 1.1805 0.0019 15 6 2.1991 -1.2715 -0.0006 16 1 3.2649 -1.0466 -0.1535 17 6 2.0341 -1.9580 1.3493 18 6 0.6663 -2.6098 1.5050 19 7 0.3173 -3.4241 0.3434 20 6 1.1579 -4.6081 0.1899 21 6 2.5527 -4.2721 -0.3212 22 8 2.5553 -3.2764 -1.3282 23 6 1.7146 -2.1443 -1.1537 24 1 1.7170 -1.5491 -2.0775 25 6 0.2831 -2.6187 -0.8829 26 1 -0.3633 -0.0686 -1.0253 27 1 -0.3633 -0.8537 0.5721 28 1 -0.3633 0.9223 0.4533 29 1 1.5514 4.4242 0.0000 30 1 3.9212 5.4317 -0.8393 31 1 4.4469 6.3699 1.2937 32 1 5.2533 2.2870 -0.0067 33 1 2.8232 -2.6906 1.5060 34 1 2.1455 -1.1972 2.1402 35 1 -0.0916 -1.8312 1.6427 36 1 0.6668 -3.2392 2.4019 37 1 0.6775 -5.3057 -0.5072 38 1 1.2448 -5.1170 1.1582 39 1 2.9884 -5.1937 -0.7496 40 1 3.2026 -3.9861 0.5061 41 1 -0.3776 -1.7649 -0.7533 42 1 -0.0637 -3.2297 -1.7165 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882406552.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 21:07:04 Heat of formation + Delta-G solvation = 27.415842 kcal Electronic energy + Delta-G solvation = -25336.742312 eV Core-core repulsion = 21820.267630 eV Total energy + Delta-G solvation = -3516.474682 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.160 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.58387 -41.84221 -38.44490 -37.58201 -36.64643 -34.90556 -33.76864 -32.38369 -32.11973 -29.94178 -28.43013 -26.41928 -25.75976 -25.02044 -23.89064 -23.47811 -22.39330 -20.55167 -19.23682 -18.60701 -18.27755 -17.68073 -17.50439 -16.71705 -16.56312 -16.45679 -16.32013 -16.09003 -15.83803 -15.60822 -15.10737 -14.89030 -14.78297 -14.58381 -14.32012 -13.77852 -13.67327 -13.43566 -13.22044 -13.14393 -12.82993 -12.39182 -12.33644 -12.18037 -12.10874 -11.94179 -11.91461 -11.67224 -11.55324 -11.09613 -10.70196 -10.54466 -9.98409 -9.11665 -8.97776 -0.03982 0.07666 1.15900 1.39001 1.44313 1.50074 1.90458 2.62054 2.68488 2.83880 3.03857 3.34032 3.45262 3.50086 3.55445 3.59642 3.65740 3.80264 3.87626 3.92807 4.02640 4.05687 4.10182 4.22696 4.27807 4.39316 4.41975 4.47768 4.56153 4.60912 4.63607 4.72662 4.74049 4.80775 4.84047 4.89479 4.98964 5.11402 5.21988 5.68300 5.71485 5.91836 6.04623 6.20049 6.28602 6.86411 7.11376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.574 5.574 3 C 0.551 3.449 4 N -0.577 5.577 5 C 0.218 3.782 6 C -0.249 4.249 7 C -0.053 4.053 8 O -0.563 6.563 9 Si 0.962 3.038 10 H -0.272 1.272 11 H -0.260 1.260 12 H -0.245 1.245 13 C 0.179 3.821 14 N -0.586 5.586 15 C 0.140 3.860 16 H 0.089 0.911 17 C -0.162 4.162 18 C 0.054 3.946 19 N -0.540 5.540 20 C 0.028 3.972 21 C 0.020 3.980 22 O -0.386 6.386 23 C 0.058 3.942 24 H 0.098 0.902 25 C 0.008 3.992 26 H 0.066 0.934 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.195 0.805 30 H 0.105 0.895 31 H 0.401 0.599 32 H 0.169 0.831 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.054 0.946 41 H 0.119 0.881 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.519 1.934 0.241 2.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.291 5.291 3 C 0.196 3.804 4 N -0.299 5.299 5 C 0.051 3.949 6 C -0.257 4.257 7 C -0.165 4.165 8 O -0.373 6.373 9 Si 0.786 3.214 10 H -0.197 1.197 11 H -0.184 1.184 12 H -0.168 1.168 13 C 0.012 3.988 14 N -0.308 5.308 15 C 0.036 3.964 16 H 0.107 0.893 17 C -0.202 4.202 18 C -0.073 4.073 19 N -0.262 5.262 20 C -0.100 4.100 21 C -0.058 4.058 22 O -0.303 6.303 23 C -0.002 4.002 24 H 0.116 0.884 25 C -0.119 4.119 26 H 0.084 0.916 27 H 0.117 0.883 28 H 0.098 0.902 29 H 0.212 0.788 30 H 0.123 0.877 31 H 0.251 0.749 32 H 0.186 0.814 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.072 0.928 41 H 0.137 0.863 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.965 -0.048 0.218 0.991 hybrid contribution 1.383 1.567 0.063 2.091 sum 0.418 1.519 0.280 1.600 Atomic orbital electron populations 1.22405 0.76904 1.04524 1.02613 1.46111 1.06127 1.00522 1.76390 1.19508 0.85376 0.87020 0.88518 1.68014 1.40969 0.98111 1.22819 1.23298 0.91301 0.95534 0.84786 1.20896 0.96699 0.96163 1.11924 1.24294 1.09397 0.92022 0.90772 1.86455 1.74930 1.38559 1.37338 0.85524 0.74789 0.81247 0.79826 1.19685 1.18382 1.16834 1.23050 1.00492 0.86937 0.88305 1.67864 1.07508 1.32159 1.23308 1.21389 0.97537 0.82334 0.95182 0.89273 1.22468 1.00395 1.00982 0.96372 1.22161 0.94357 0.97241 0.93576 1.60918 1.52908 1.08699 1.03638 1.22509 0.90878 0.92843 1.03810 1.23135 0.98290 0.91774 0.92575 1.87349 1.65675 1.31021 1.46280 1.22703 0.92513 0.86648 0.98338 0.88407 1.23275 0.95351 1.00035 0.93237 0.91601 0.88339 0.90219 0.78837 0.87701 0.74851 0.81382 0.90048 0.91915 0.89258 0.89154 0.89566 0.88249 0.88085 0.92775 0.86292 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.00 8.27 127.77 1.06 1.06 16 2 N -0.57 -2.70 2.84 -711.67 -2.02 -4.72 16 3 C 0.55 4.83 8.18 261.49 2.14 6.97 16 4 N -0.58 -4.30 9.05 -197.98 -1.79 -6.09 16 5 C 0.22 0.77 10.99 84.71 0.93 1.70 16 6 C -0.25 -0.71 5.40 -19.69 -0.11 -0.82 16 7 C -0.05 0.17 2.82 71.24 0.20 0.37 16 8 O -0.56 1.44 12.82 -148.98 -1.91 -0.47 16 9 Si 0.96 -2.47 25.20 68.60 1.73 -0.74 16 10 H -0.27 -0.43 7.06 99.48 0.70 0.28 16 11 H -0.26 0.16 7.11 99.48 0.71 0.87 16 12 H -0.24 0.84 7.11 99.48 0.71 1.54 16 13 C 0.18 1.07 9.92 84.71 0.84 1.91 16 14 N -0.59 -5.74 8.80 -197.99 -1.74 -7.48 16 15 C 0.14 0.59 2.60 44.55 0.12 0.70 16 16 H 0.09 0.82 6.76 -1.86 -0.01 0.81 16 17 C -0.16 -0.22 4.75 30.15 0.14 -0.07 16 18 C 0.05 -0.08 5.31 86.23 0.46 0.38 16 19 N -0.54 0.22 4.92 -900.18 -4.43 -4.20 16 20 C 0.03 -0.05 5.88 86.24 0.51 0.46 16 21 C 0.02 0.01 6.06 71.75 0.43 0.45 16 22 O -0.39 -2.30 10.35 -148.81 -1.54 -3.84 16 23 C 0.06 0.20 3.25 30.51 0.10 0.30 16 24 H 0.10 0.47 8.22 -1.91 -0.02 0.46 16 25 C 0.01 0.00 5.58 86.40 0.48 0.48 16 26 H 0.07 -0.10 7.24 -2.39 -0.02 -0.12 16 27 H 0.10 -0.25 3.04 -2.39 -0.01 -0.26 16 28 H 0.08 0.13 7.21 -2.39 -0.02 0.12 16 29 H 0.19 -0.45 8.06 -2.90 -0.02 -0.47 16 30 H 0.11 -0.88 7.96 -2.39 -0.02 -0.90 16 31 H 0.40 -4.66 8.74 -74.06 -0.65 -5.30 16 32 H 0.17 0.42 5.03 -2.91 -0.01 0.40 16 33 H 0.08 0.10 5.72 -2.49 -0.01 0.08 16 34 H 0.06 0.23 8.23 -1.68 -0.01 0.21 16 35 H 0.09 -0.20 5.50 -2.11 -0.01 -0.21 16 36 H 0.09 -0.28 8.10 -2.09 -0.02 -0.29 16 37 H 0.09 -0.16 8.20 -2.01 -0.02 -0.17 16 38 H 0.10 -0.43 8.07 -2.00 -0.02 -0.44 16 39 H 0.10 -0.15 8.27 -1.54 -0.01 -0.17 16 40 H 0.05 0.01 5.92 -2.37 -0.01 0.00 16 41 H 0.12 -0.27 3.55 -2.52 -0.01 -0.28 16 42 H 0.09 0.03 8.14 -2.38 -0.02 0.01 16 Total: 0.00 -14.29 306.22 -3.21 -17.49 By element: Atomic # 1 Polarization: -5.04 SS G_CDS: 1.20 Total: -3.84 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 7.30 Total: 13.89 kcal Atomic # 7 Polarization: -12.51 SS G_CDS: -9.98 Total: -22.49 kcal Atomic # 8 Polarization: -0.86 SS G_CDS: -3.45 Total: -4.31 kcal Atomic # 14 Polarization: -2.47 SS G_CDS: 1.73 Total: -0.74 kcal Total: -14.29 -3.21 -17.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882406552.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.910 kcal (2) G-P(sol) polarization free energy of solvation -14.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds