Wall clock time and date at job start Tue Mar 17 2020 21:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38404 * 120.00267 * 2 1 4 4 N 1.32491 * 119.21984 * 179.73162 * 3 2 1 5 5 C 1.32278 * 120.74335 * 179.71739 * 4 3 2 6 6 C 1.38612 * 119.19335 * 0.54641 * 5 4 3 7 7 C 1.50701 * 120.71766 * 179.70837 * 6 5 4 8 8 O 1.42905 * 109.46876 * 120.02101 * 7 6 5 9 9 Si 1.86298 * 109.47308 * 0.02562 * 7 6 5 10 10 H 1.48499 * 109.47104 * 179.97438 * 9 7 6 11 11 H 1.48500 * 109.47098 * 300.00001 * 9 7 6 12 12 H 1.48498 * 109.47284 * 60.00176 * 9 7 6 13 13 C 1.38598 * 118.55929 * 359.72942 * 6 5 4 14 14 N 1.32281 * 119.19681 * 359.97438 * 13 6 5 15 15 C 1.46769 * 119.99954 * 180.02562 * 2 1 3 16 16 H 1.09856 * 108.13434 * 124.96280 * 15 2 1 17 17 C 1.52524 * 109.71834 * 243.49720 * 15 2 1 18 18 C 1.52311 * 111.83548 * 74.40128 * 17 15 2 19 19 N 1.46067 * 112.34928 * 50.47978 * 18 17 15 20 20 H 1.02210 * 107.44096 * 183.64221 * 19 18 17 21 21 C 1.45699 * 112.77624 * 65.08350 * 19 18 17 22 22 C 1.52067 * 113.67103 * 286.60135 * 21 19 18 23 23 O 1.41608 * 113.52496 * 320.31988 * 22 21 19 24 24 C 1.42163 * 117.96868 * 41.78629 * 23 22 21 25 25 H 1.09979 * 109.14796 * 189.07789 * 24 23 22 26 26 C 1.46580 * 110.44734 * 300.22598 * 19 18 17 27 27 H 1.08999 * 109.46998 * 272.37991 * 1 2 3 28 28 H 1.08997 * 109.46638 * 32.37675 * 1 2 3 29 29 H 1.08994 * 109.46895 * 152.37996 * 1 2 3 30 30 H 1.07998 * 120.40863 * 180.29840 * 5 4 3 31 31 H 1.09004 * 109.47091 * 240.02025 * 7 6 5 32 32 H 0.96703 * 113.99833 * 179.97438 * 8 7 6 33 33 H 1.07995 * 120.40363 * 180.02562 * 13 6 5 34 34 H 1.10395 * 108.08457 * 315.60216 * 17 15 2 35 35 H 1.08506 * 111.02879 * 198.78835 * 17 15 2 36 36 H 1.09388 * 109.37673 * 289.09263 * 18 17 15 37 37 H 1.09566 * 109.05164 * 171.32807 * 18 17 15 38 38 H 1.09760 * 109.05633 * 48.50286 * 21 19 18 39 39 H 1.09868 * 108.86753 * 165.06066 * 21 19 18 40 40 H 1.10757 * 107.82597 * 200.86750 * 22 21 19 41 41 H 1.09014 * 110.60479 * 85.74728 * 22 21 19 42 42 H 1.09033 * 109.48675 * 184.15166 * 26 19 18 43 43 H 1.08765 * 109.84381 * 304.46862 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1571 1.1986 0.0000 4 7 3.4819 1.1805 0.0054 5 6 4.1735 2.3080 0.0000 6 6 3.4957 3.5170 0.0000 7 6 4.2492 4.8221 0.0005 8 8 3.9040 5.5719 -1.1660 9 14 6.0808 4.4816 0.0002 10 1 6.8234 5.7676 0.0001 11 1 6.4397 3.7024 1.2123 12 1 6.4395 3.7035 -1.2127 13 6 2.1098 3.4996 0.0000 14 7 1.4791 2.3369 -0.0005 15 6 2.1988 -1.2711 -0.0006 16 1 2.8879 -1.2677 -0.8561 17 6 3.0110 -1.3969 1.2843 18 6 2.1279 -1.7148 2.4839 19 7 1.2374 -2.8453 2.2340 20 1 0.6413 -2.9535 3.0571 21 6 1.9564 -4.0975 2.0392 22 6 2.6664 -4.1915 0.6978 23 8 1.9176 -3.6535 -0.3770 24 6 1.2215 -2.4332 -0.1596 25 1 0.5657 -2.2339 -1.0197 26 6 0.3574 -2.5623 1.0964 27 1 -0.3633 0.0427 1.0268 28 1 -0.3632 0.8679 -0.5503 29 1 -0.3633 -0.9105 -0.4764 30 1 5.2533 2.2869 -0.0004 31 1 3.9859 5.3934 0.8907 32 1 4.3527 6.4260 -1.2317 33 1 1.5516 4.4241 -0.0003 34 1 3.5074 -0.4289 1.4722 35 1 3.7974 -2.1368 1.1769 36 1 1.5291 -0.8351 2.7369 37 1 2.7644 -1.9476 3.3448 38 1 2.6935 -4.2163 2.8438 39 1 1.2468 -4.9318 2.1251 40 1 2.8465 -5.2632 0.4839 41 1 3.6534 -3.7319 0.7530 42 1 -0.3489 -3.3832 0.9698 43 1 -0.1876 -1.6376 1.2723 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882406552.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 21:07:14 Heat of formation + Delta-G solvation = 147.798777 kcal Electronic energy + Delta-G solvation = -25884.104837 eV Core-core repulsion = 22359.194612 eV Total energy + Delta-G solvation = -3524.910225 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.97261 -43.28802 -40.56816 -40.02022 -38.67075 -36.21385 -35.58427 -35.22757 -33.86231 -32.24455 -30.33169 -28.87024 -27.72717 -26.70411 -26.38742 -25.82838 -23.94717 -22.84828 -21.90031 -20.68382 -20.32653 -19.94293 -19.67430 -19.33084 -19.22676 -18.68625 -18.40138 -18.00514 -17.51707 -17.10629 -16.96997 -16.83005 -16.47971 -16.37765 -16.20618 -16.02317 -15.82785 -15.59864 -15.34225 -15.16685 -15.02536 -14.68882 -14.47254 -14.21189 -13.94635 -13.67299 -13.24563 -13.03569 -12.90350 -12.72340 -12.64524 -12.39710 -11.59301 -11.04239 -10.31907 -1.59976 -1.10344 -1.00353 -0.15812 0.20016 0.31172 0.44800 0.47336 0.50911 0.58209 0.59991 0.81543 1.02093 1.11414 1.34011 1.46721 1.58592 1.62906 1.69762 1.74606 1.82207 1.90579 1.91699 2.02843 2.15481 2.28140 2.36379 2.37878 2.47913 2.52358 2.58074 2.69072 2.80449 2.84390 2.88997 3.02136 3.11856 3.26925 3.39169 3.50259 3.69301 3.96725 4.02120 4.26417 4.54498 4.99762 5.67375 5.98191 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.027838 B = 0.004620 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.585050 B = 6058.559551 C = 6504.537564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.592 5.592 3 C 0.558 3.442 4 N -0.563 5.563 5 C 0.191 3.809 6 C -0.226 4.226 7 C -0.066 4.066 8 O -0.546 6.546 9 Si 0.932 3.068 10 H -0.244 1.244 11 H -0.248 1.248 12 H -0.244 1.244 13 C 0.228 3.772 14 N -0.558 5.558 15 C 0.137 3.863 16 H 0.113 0.887 17 C -0.171 4.171 18 C -0.008 4.008 19 N -0.371 5.371 20 H 0.431 0.569 21 C -0.045 4.045 22 C 0.034 3.966 23 O -0.338 6.338 24 C 0.077 3.923 25 H 0.155 0.845 26 C -0.058 4.058 27 H 0.056 0.944 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.166 0.834 31 H 0.083 0.917 32 H 0.388 0.612 33 H 0.178 0.822 34 H 0.130 0.870 35 H 0.105 0.895 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.133 0.867 41 H 0.087 0.913 42 H 0.146 0.854 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.263 -12.922 9.920 17.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.314 5.314 3 C 0.203 3.797 4 N -0.285 5.285 5 C 0.025 3.975 6 C -0.233 4.233 7 C -0.177 4.177 8 O -0.353 6.353 9 Si 0.753 3.247 10 H -0.167 1.167 11 H -0.172 1.172 12 H -0.167 1.167 13 C 0.061 3.939 14 N -0.278 5.278 15 C 0.033 3.967 16 H 0.131 0.869 17 C -0.209 4.209 18 C -0.129 4.129 19 N 0.051 4.949 20 H 0.267 0.733 21 C -0.167 4.167 22 C -0.042 4.042 23 O -0.255 6.255 24 C 0.018 3.982 25 H 0.172 0.828 26 C -0.180 4.180 27 H 0.074 0.926 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.183 0.817 31 H 0.101 0.899 32 H 0.237 0.763 33 H 0.195 0.805 34 H 0.148 0.852 35 H 0.124 0.876 36 H 0.146 0.854 37 H 0.152 0.848 38 H 0.161 0.839 39 H 0.157 0.843 40 H 0.151 0.849 41 H 0.104 0.896 42 H 0.164 0.836 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.130 -14.728 9.374 18.196 hybrid contribution 0.214 1.588 0.684 1.742 sum -4.916 -13.140 10.058 17.262 Atomic orbital electron populations 1.22045 0.77547 1.04820 1.01709 1.45796 1.05264 1.00657 1.79641 1.19103 0.85250 0.85986 0.89346 1.67856 1.06699 1.31409 1.22521 1.22832 1.00169 0.86477 0.88057 1.20815 0.96585 0.95849 1.10013 1.24378 1.09956 0.91934 0.91482 1.86474 1.71421 1.35496 1.41894 0.85917 0.74291 0.82823 0.81662 1.16701 1.17197 1.16723 1.22957 0.90963 0.95190 0.84770 1.67963 1.40750 0.97738 1.21392 1.21421 0.93788 0.81923 0.99602 0.86912 1.22480 0.98148 1.08593 0.91677 1.23688 0.96594 0.89198 1.03443 1.44906 1.17031 1.14847 1.18151 0.73265 1.24164 1.02871 0.84981 1.04663 1.22916 0.94497 1.03904 0.82918 1.87706 1.65573 1.36077 1.36098 1.22771 0.92701 0.84856 0.97850 0.82834 1.24974 0.95051 1.10516 0.87441 0.92568 0.88432 0.90574 0.81710 0.89921 0.76326 0.80528 0.85204 0.87640 0.85401 0.84827 0.83934 0.84281 0.84916 0.89561 0.83635 0.82995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -1.61 8.43 59.85 0.50 -1.10 16 2 N -0.59 10.73 3.10 -176.19 -0.55 10.19 16 3 C 0.56 -7.52 7.80 -322.81 -2.52 -10.04 16 4 N -0.56 7.21 7.76 -13.93 -0.11 7.10 16 5 C 0.19 -2.27 9.92 -17.22 -0.17 -2.44 16 6 C -0.23 2.58 5.43 -104.35 -0.57 2.02 16 7 C -0.07 0.80 2.84 36.01 0.10 0.90 16 8 O -0.55 5.86 12.76 -35.23 -0.45 5.41 16 9 Si 0.93 -10.77 25.15 -169.99 -4.28 -15.05 16 10 H -0.24 2.49 7.11 56.52 0.40 2.90 16 11 H -0.25 2.90 7.11 56.52 0.40 3.30 16 12 H -0.24 2.43 7.11 56.52 0.40 2.83 16 13 C 0.23 -2.59 10.92 -17.23 -0.19 -2.78 16 14 N -0.56 6.50 9.15 -13.93 -0.13 6.37 16 15 C 0.14 -2.85 2.34 -68.19 -0.16 -3.01 16 16 H 0.11 -1.98 8.18 -51.44 -0.42 -2.40 16 17 C -0.17 3.91 4.66 -27.33 -0.13 3.78 16 18 C -0.01 0.22 5.39 -4.63 -0.02 0.20 16 19 N -0.37 11.28 0.63 -236.55 -0.15 11.13 16 20 H 0.43 -14.56 8.42 -38.75 -0.33 -14.89 16 21 C -0.04 1.31 5.50 -4.95 -0.03 1.28 16 22 C 0.03 -0.85 6.01 36.68 0.22 -0.63 16 23 O -0.34 7.30 10.36 -35.18 -0.36 6.93 16 24 C 0.08 -1.80 2.77 -26.90 -0.07 -1.88 16 25 H 0.15 -3.50 6.66 -51.37 -0.34 -3.85 16 26 C -0.06 1.63 4.90 -4.00 -0.02 1.61 16 27 H 0.06 -1.23 6.93 -51.93 -0.36 -1.59 16 28 H 0.10 -1.59 7.41 -51.93 -0.38 -1.97 16 29 H 0.08 -1.72 4.90 -51.93 -0.25 -1.98 16 30 H 0.17 -2.16 5.04 -52.49 -0.26 -2.43 16 31 H 0.08 -1.15 7.96 -51.93 -0.41 -1.57 16 32 H 0.39 -5.56 8.74 45.56 0.40 -5.16 16 33 H 0.18 -2.22 8.06 -52.49 -0.42 -2.65 16 34 H 0.13 -2.54 5.97 -51.13 -0.31 -2.85 16 35 H 0.11 -2.48 5.59 -52.21 -0.29 -2.77 16 36 H 0.13 -3.47 8.17 -51.71 -0.42 -3.89 16 37 H 0.13 -3.88 8.10 -51.61 -0.42 -4.30 16 38 H 0.14 -4.37 8.07 -51.50 -0.42 -4.78 16 39 H 0.14 -4.21 8.21 -51.44 -0.42 -4.63 16 40 H 0.13 -3.23 8.29 -50.92 -0.42 -3.65 16 41 H 0.09 -2.11 5.91 -51.92 -0.31 -2.42 16 42 H 0.15 -4.25 8.14 -51.91 -0.42 -4.68 16 43 H 0.15 -4.31 4.47 -52.06 -0.23 -4.54 16 LS Contribution 310.37 15.07 4.68 4.68 Total: 1.00 -33.64 310.37 -9.64 -43.28 By element: Atomic # 1 Polarization: -62.71 SS G_CDS: -5.25 Total: -67.96 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -3.05 Total: -12.09 kcal Atomic # 7 Polarization: 35.72 SS G_CDS: -0.93 Total: 34.79 kcal Atomic # 8 Polarization: 13.16 SS G_CDS: -0.81 Total: 12.34 kcal Atomic # 14 Polarization: -10.77 SS G_CDS: -4.28 Total: -15.05 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.64 -9.64 -43.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882406552.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.082 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds