Wall clock time and date at job start Tue Mar 17 2020 21:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38404 * 120.00267 * 2 1 4 4 N 1.32491 * 119.21984 * 179.73162 * 3 2 1 5 5 C 1.32278 * 120.74335 * 179.71739 * 4 3 2 6 6 C 1.38612 * 119.19335 * 0.54641 * 5 4 3 7 7 C 1.50701 * 120.71766 * 179.70837 * 6 5 4 8 8 O 1.42905 * 109.46876 * 120.02101 * 7 6 5 9 9 Si 1.86298 * 109.47308 * 0.02562 * 7 6 5 10 10 H 1.48499 * 109.47104 * 179.97438 * 9 7 6 11 11 H 1.48500 * 109.47098 * 300.00001 * 9 7 6 12 12 H 1.48498 * 109.47284 * 60.00176 * 9 7 6 13 13 C 1.38598 * 118.55929 * 359.72942 * 6 5 4 14 14 N 1.32281 * 119.19681 * 359.97438 * 13 6 5 15 15 C 1.46769 * 119.99954 * 180.02562 * 2 1 3 16 16 H 1.09856 * 108.13434 * 124.96280 * 15 2 1 17 17 C 1.52524 * 109.71834 * 243.49720 * 15 2 1 18 18 C 1.52311 * 111.83548 * 74.40128 * 17 15 2 19 19 N 1.46067 * 112.34928 * 50.47978 * 18 17 15 20 20 H 1.02210 * 107.44096 * 183.64221 * 19 18 17 21 21 C 1.45699 * 112.77624 * 65.08350 * 19 18 17 22 22 C 1.52067 * 113.67103 * 286.60135 * 21 19 18 23 23 O 1.41608 * 113.52496 * 320.31988 * 22 21 19 24 24 C 1.42163 * 117.96868 * 41.78629 * 23 22 21 25 25 H 1.09979 * 109.14796 * 189.07789 * 24 23 22 26 26 C 1.46580 * 110.44734 * 300.22598 * 19 18 17 27 27 H 1.08999 * 109.46998 * 272.37991 * 1 2 3 28 28 H 1.08997 * 109.46638 * 32.37675 * 1 2 3 29 29 H 1.08994 * 109.46895 * 152.37996 * 1 2 3 30 30 H 1.07998 * 120.40863 * 180.29840 * 5 4 3 31 31 H 1.09004 * 109.47091 * 240.02025 * 7 6 5 32 32 H 0.96703 * 113.99833 * 179.97438 * 8 7 6 33 33 H 1.07995 * 120.40363 * 180.02562 * 13 6 5 34 34 H 1.10395 * 108.08457 * 315.60216 * 17 15 2 35 35 H 1.08506 * 111.02879 * 198.78835 * 17 15 2 36 36 H 1.09388 * 109.37673 * 289.09263 * 18 17 15 37 37 H 1.09566 * 109.05164 * 171.32807 * 18 17 15 38 38 H 1.09760 * 109.05633 * 48.50286 * 21 19 18 39 39 H 1.09868 * 108.86753 * 165.06066 * 21 19 18 40 40 H 1.10757 * 107.82597 * 200.86750 * 22 21 19 41 41 H 1.09014 * 110.60479 * 85.74728 * 22 21 19 42 42 H 1.09033 * 109.48675 * 184.15166 * 26 19 18 43 43 H 1.08765 * 109.84381 * 304.46862 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1571 1.1986 0.0000 4 7 3.4819 1.1805 0.0054 5 6 4.1735 2.3080 0.0000 6 6 3.4957 3.5170 0.0000 7 6 4.2492 4.8221 0.0005 8 8 3.9040 5.5719 -1.1660 9 14 6.0808 4.4816 0.0002 10 1 6.8234 5.7676 0.0001 11 1 6.4397 3.7024 1.2123 12 1 6.4395 3.7035 -1.2127 13 6 2.1098 3.4996 0.0000 14 7 1.4791 2.3369 -0.0005 15 6 2.1988 -1.2711 -0.0006 16 1 2.8879 -1.2677 -0.8561 17 6 3.0110 -1.3969 1.2843 18 6 2.1279 -1.7148 2.4839 19 7 1.2374 -2.8453 2.2340 20 1 0.6413 -2.9535 3.0571 21 6 1.9564 -4.0975 2.0392 22 6 2.6664 -4.1915 0.6978 23 8 1.9176 -3.6535 -0.3770 24 6 1.2215 -2.4332 -0.1596 25 1 0.5657 -2.2339 -1.0197 26 6 0.3574 -2.5623 1.0964 27 1 -0.3633 0.0427 1.0268 28 1 -0.3632 0.8679 -0.5503 29 1 -0.3633 -0.9105 -0.4764 30 1 5.2533 2.2869 -0.0004 31 1 3.9859 5.3934 0.8907 32 1 4.3527 6.4260 -1.2317 33 1 1.5516 4.4241 -0.0003 34 1 3.5074 -0.4289 1.4722 35 1 3.7974 -2.1368 1.1769 36 1 1.5291 -0.8351 2.7369 37 1 2.7644 -1.9476 3.3448 38 1 2.6935 -4.2163 2.8438 39 1 1.2468 -4.9318 2.1251 40 1 2.8465 -5.2632 0.4839 41 1 3.6534 -3.7319 0.7530 42 1 -0.3489 -3.3832 0.9698 43 1 -0.1876 -1.6376 1.2723 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882406552.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 21:07:12 Heat of formation + Delta-G solvation = 123.769775 kcal Electronic energy + Delta-G solvation = -25885.146813 eV Core-core repulsion = 22359.194612 eV Total energy + Delta-G solvation = -3525.952201 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.87922 -42.17831 -38.84938 -38.35234 -37.62298 -35.03260 -34.08422 -33.38002 -32.41183 -30.31910 -28.74245 -27.19210 -26.15673 -25.54245 -24.57779 -24.13948 -22.67909 -20.81755 -19.97896 -19.14453 -18.76005 -18.41149 -18.16775 -17.65055 -17.42848 -16.95126 -16.67420 -16.55406 -16.22622 -16.00280 -15.52906 -15.37835 -15.00769 -14.75729 -14.55724 -14.40781 -14.24284 -14.07264 -13.51696 -13.40311 -13.22489 -13.14481 -12.80866 -12.70474 -12.36861 -12.14831 -12.03170 -11.90919 -11.79344 -11.67888 -11.23421 -10.80027 -10.58785 -10.04805 -9.07416 -0.08972 -0.00978 0.71511 1.11942 1.27685 1.37930 1.45261 1.87407 2.35417 2.58708 2.64297 2.71233 2.78043 2.84739 3.01664 3.10757 3.38132 3.39018 3.42626 3.53798 3.58534 3.72558 3.83488 3.87755 3.98027 4.03654 4.07138 4.10005 4.16923 4.23751 4.35493 4.39212 4.50830 4.52118 4.53364 4.59922 4.65232 4.68848 4.76475 4.89546 5.05855 5.10649 5.61445 5.66387 5.99642 6.10455 6.76736 7.04983 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.027838 B = 0.004620 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.585050 B = 6058.559551 C = 6504.537564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.579 5.579 3 C 0.548 3.452 4 N -0.568 5.568 5 C 0.179 3.821 6 C -0.243 4.243 7 C -0.057 4.057 8 O -0.567 6.567 9 Si 0.959 3.041 10 H -0.261 1.261 11 H -0.245 1.245 12 H -0.273 1.273 13 C 0.218 3.782 14 N -0.574 5.574 15 C 0.136 3.864 16 H 0.065 0.935 17 C -0.167 4.167 18 C 0.002 3.998 19 N -0.352 5.352 20 H 0.459 0.541 21 C -0.035 4.035 22 C 0.022 3.978 23 O -0.370 6.370 24 C 0.077 3.923 25 H 0.141 0.859 26 C -0.046 4.046 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.168 0.832 31 H 0.103 0.897 32 H 0.401 0.599 33 H 0.183 0.817 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.131 0.869 37 H 0.160 0.840 38 H 0.166 0.834 39 H 0.162 0.838 40 H 0.124 0.876 41 H 0.073 0.927 42 H 0.172 0.828 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.083 -14.796 12.466 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.299 5.299 3 C 0.193 3.807 4 N -0.290 5.290 5 C 0.013 3.987 6 C -0.251 4.251 7 C -0.169 4.169 8 O -0.376 6.376 9 Si 0.784 3.216 10 H -0.185 1.185 11 H -0.169 1.169 12 H -0.198 1.198 13 C 0.050 3.950 14 N -0.296 5.296 15 C 0.032 3.968 16 H 0.083 0.917 17 C -0.206 4.206 18 C -0.120 4.120 19 N 0.066 4.934 20 H 0.301 0.699 21 C -0.157 4.157 22 C -0.054 4.054 23 O -0.287 6.287 24 C 0.018 3.982 25 H 0.158 0.842 26 C -0.168 4.168 27 H 0.106 0.894 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.185 0.815 31 H 0.121 0.879 32 H 0.252 0.748 33 H 0.200 0.800 34 H 0.113 0.887 35 H 0.125 0.875 36 H 0.149 0.851 37 H 0.177 0.823 38 H 0.183 0.817 39 H 0.180 0.820 40 H 0.141 0.859 41 H 0.091 0.909 42 H 0.189 0.811 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.983 -16.644 11.958 21.651 hybrid contribution 0.837 2.067 -0.236 2.243 sum -6.146 -14.576 11.723 19.689 Atomic orbital electron populations 1.22308 0.76196 1.04770 1.03565 1.46090 1.06082 1.00017 1.77711 1.19549 0.85296 0.87081 0.88784 1.67954 1.07218 1.31011 1.22858 1.22988 1.00537 0.86935 0.88278 1.20881 0.96741 0.96128 1.11319 1.24325 1.08883 0.91924 0.91817 1.86439 1.71922 1.36520 1.42718 0.85555 0.74714 0.81100 0.80255 1.18505 1.16874 1.19850 1.23118 0.91182 0.95723 0.84963 1.68009 1.41038 0.98176 1.22367 1.21494 0.94058 0.81892 0.99350 0.91662 1.22315 0.98852 1.06886 0.92551 1.23480 0.96709 0.90442 1.01323 1.44646 1.16518 1.13607 1.18611 0.69933 1.24078 1.03877 0.85691 1.02029 1.23017 0.94595 1.02903 0.84884 1.87656 1.66224 1.36374 1.38447 1.22636 0.92158 0.83121 1.00279 0.84171 1.24805 0.94295 1.12054 0.85628 0.89407 0.91958 0.87521 0.81481 0.87887 0.74841 0.80011 0.88720 0.87534 0.85140 0.82268 0.81652 0.81987 0.85864 0.90883 0.81086 0.82236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -2.79 8.43 127.77 1.08 -1.71 16 2 N -0.58 19.39 3.10 -711.34 -2.20 17.19 16 3 C 0.55 -12.85 7.80 261.49 2.04 -10.81 16 4 N -0.57 12.17 7.76 -197.98 -1.54 10.63 16 5 C 0.18 -3.55 9.92 84.71 0.84 -2.71 16 6 C -0.24 4.76 5.43 -19.69 -0.11 4.65 16 7 C -0.06 1.24 2.84 71.24 0.20 1.45 16 8 O -0.57 10.70 12.76 -148.98 -1.90 8.80 16 9 Si 0.96 -19.31 25.15 68.60 1.73 -17.58 16 10 H -0.26 4.61 7.11 99.48 0.71 5.32 16 11 H -0.25 5.14 7.11 99.48 0.71 5.85 16 12 H -0.27 4.28 7.11 99.48 0.71 4.99 16 13 C 0.22 -4.23 10.92 84.71 0.93 -3.30 16 14 N -0.57 11.50 9.15 -197.99 -1.81 9.69 16 15 C 0.14 -5.22 2.34 44.68 0.10 -5.12 16 16 H 0.07 -1.91 8.18 -1.93 -0.02 -1.93 16 17 C -0.17 7.30 4.66 30.21 0.14 7.45 16 18 C 0.00 -0.13 5.39 86.23 0.47 0.34 16 19 N -0.35 22.04 0.63 -902.30 -0.57 21.47 16 20 H 0.46 -32.65 8.42 -88.63 -0.75 -33.40 16 21 C -0.03 2.10 5.50 86.22 0.47 2.58 16 22 C 0.02 -1.08 6.01 71.67 0.43 -0.64 16 23 O -0.37 15.14 10.36 -148.80 -1.54 13.60 16 24 C 0.08 -3.47 2.77 30.49 0.08 -3.38 16 25 H 0.14 -6.09 6.66 -1.86 -0.01 -6.11 16 26 C -0.05 2.62 4.90 86.36 0.42 3.04 16 27 H 0.09 -3.90 6.93 -2.39 -0.02 -3.92 16 28 H 0.06 -1.85 7.41 -2.39 -0.02 -1.87 16 29 H 0.11 -4.77 4.90 -2.39 -0.01 -4.79 16 30 H 0.17 -3.68 5.04 -2.91 -0.01 -3.69 16 31 H 0.10 -2.70 7.96 -2.39 -0.02 -2.72 16 32 H 0.40 -10.54 8.74 -74.05 -0.65 -11.19 16 33 H 0.18 -4.02 8.06 -2.91 -0.02 -4.05 16 34 H 0.09 -3.38 5.97 -1.64 -0.01 -3.39 16 35 H 0.11 -4.70 5.59 -2.65 -0.01 -4.71 16 36 H 0.13 -7.22 8.17 -2.18 -0.02 -7.24 16 37 H 0.16 -9.57 8.10 -2.09 -0.02 -9.59 16 38 H 0.17 -10.55 8.07 -1.98 -0.02 -10.57 16 39 H 0.16 -10.29 8.21 -1.92 -0.02 -10.31 16 40 H 0.12 -5.77 8.29 -1.44 -0.01 -5.78 16 41 H 0.07 -3.38 5.91 -2.38 -0.01 -3.40 16 42 H 0.17 -10.47 8.14 -2.37 -0.02 -10.49 16 43 H 0.16 -9.34 4.47 -2.51 -0.01 -9.35 16 Total: 1.00 -76.43 310.37 -0.29 -76.72 By element: Atomic # 1 Polarization: -132.77 SS G_CDS: 0.45 Total: -132.33 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 7.10 Total: -8.18 kcal Atomic # 7 Polarization: 65.10 SS G_CDS: -6.12 Total: 58.98 kcal Atomic # 8 Polarization: 25.84 SS G_CDS: -3.44 Total: 22.39 kcal Atomic # 14 Polarization: -19.31 SS G_CDS: 1.73 Total: -17.58 kcal Total: -76.43 -0.29 -76.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882406552.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.485 kcal (2) G-P(sol) polarization free energy of solvation -76.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds