Wall clock time and date at job start Tue Mar 17 2020 23:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37953 * 120.06180 * 2 1 4 4 C 1.38393 * 120.12585 * 179.97438 * 3 2 1 5 5 C 1.38354 * 120.24163 * 359.96013 * 4 3 2 6 6 C 1.38000 * 120.12117 * 0.03945 * 5 4 3 7 7 C 1.39368 * 119.87615 * 359.97438 * 6 5 4 8 Xx 1.57002 * 120.12068 * 180.27492 * 7 6 5 9 8 O 1.42000 * 119.99947 * 162.91434 * 8 7 6 10 9 O 1.42001 * 119.99732 * 342.92007 * 8 7 6 11 10 C 1.42900 * 113.99606 * 264.95423 * 10 8 7 12 11 C 1.52998 * 109.47174 * 303.17483 * 11 10 8 13 12 C 1.53001 * 109.46900 * 63.17378 * 11 10 8 14 13 C 1.52999 * 109.47285 * 183.17397 * 11 10 8 15 14 C 1.52994 * 109.47579 * 180.02562 * 14 11 10 16 15 C 1.53005 * 109.46854 * 300.00018 * 14 11 10 17 16 O 1.42898 * 109.47162 * 59.99987 * 14 11 10 18 17 C 1.50696 * 119.88162 * 179.97438 * 4 3 2 19 18 O 1.42898 * 109.47246 * 64.99774 * 18 4 3 20 19 Si 1.86301 * 109.47264 * 185.00362 * 18 4 3 21 20 H 1.48497 * 109.47250 * 59.99756 * 20 18 4 22 21 H 1.48500 * 109.46979 * 180.02562 * 20 18 4 23 22 H 1.48500 * 109.46805 * 299.99992 * 20 18 4 24 23 H 1.08998 * 109.47443 * 264.56323 * 1 2 3 25 24 H 1.09005 * 109.47372 * 24.56943 * 1 2 3 26 25 H 1.09004 * 109.47423 * 144.56546 * 1 2 3 27 26 H 1.08006 * 119.94070 * 359.97438 * 3 2 1 28 27 H 1.07992 * 119.93558 * 180.02562 * 5 4 3 29 28 H 1.07994 * 120.05996 * 180.02562 * 6 5 4 30 29 H 0.96704 * 114.00115 * 185.49317 * 9 8 7 31 30 H 1.09000 * 109.47527 * 63.93093 * 12 11 10 32 31 H 1.09000 * 109.47312 * 183.93012 * 12 11 10 33 32 H 1.09001 * 109.47114 * 303.92548 * 12 11 10 34 33 H 1.08990 * 109.47445 * 60.74682 * 13 11 10 35 34 H 1.09005 * 109.46939 * 180.74567 * 13 11 10 36 35 H 1.09003 * 109.47072 * 300.73937 * 13 11 10 37 36 H 1.09003 * 109.47397 * 59.99055 * 15 14 11 38 37 H 1.08998 * 109.47700 * 179.97438 * 15 14 11 39 38 H 1.09004 * 109.47169 * 300.00036 * 15 14 11 40 39 H 1.09003 * 109.47177 * 59.99975 * 16 14 11 41 40 H 1.08998 * 109.47247 * 179.97438 * 16 14 11 42 41 H 1.08996 * 109.47211 * 299.99836 * 16 14 11 43 42 H 0.96695 * 113.99932 * 60.00193 * 17 14 11 44 43 H 1.09004 * 109.47210 * 305.00221 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1980 1.1940 0.0000 4 6 3.5819 1.1955 0.0005 5 6 4.2801 0.0010 0.0019 6 6 3.5990 -1.1992 0.0019 7 6 2.2053 -1.2066 0.0011 8 8 0.0515 -2.5983 0.3682 9 8 2.0918 -3.7710 -0.3470 10 6 1.9371 -4.1385 -1.7192 11 6 0.4483 -4.2604 -2.0499 12 6 2.5710 -3.0670 -2.6086 13 6 2.6265 -5.4814 -1.9685 14 6 2.4615 -5.8746 -3.4378 15 6 4.1154 -5.3595 -1.6378 16 8 2.0345 -6.4822 -1.1378 17 6 4.3312 2.5030 -0.0001 18 8 4.0736 3.2002 1.2204 19 14 6.1582 2.1716 -0.1523 20 1 6.4259 1.4471 -1.4206 21 1 6.8966 3.4601 -0.1523 22 1 6.6084 1.3436 0.9953 23 1 -0.3634 -0.0974 1.0230 24 1 -0.3634 0.9346 -0.4273 25 1 -0.3634 -0.8373 -0.5958 26 1 1.6580 2.1293 -0.0004 27 1 5.3600 0.0080 0.0027 28 1 4.1450 -2.1310 0.0034 29 1 -0.3213 -3.4888 0.4243 30 1 -0.0294 -3.2868 -1.9395 31 1 0.3313 -4.6081 -3.0763 32 1 -0.0178 -4.9731 -1.3695 33 1 3.6344 -2.9894 -2.3823 34 1 2.4414 -3.3407 -3.6557 35 1 2.0887 -2.1075 -2.4215 36 1 2.9133 -5.1111 -4.0712 37 1 2.9530 -6.8311 -3.6155 38 1 1.4009 -5.9613 -3.6738 39 1 4.2334 -5.0792 -0.5910 40 1 4.6065 -6.3163 -1.8149 41 1 4.5670 -4.5962 -2.2714 42 1 1.0892 -6.6135 -1.2932 43 1 4.0008 3.1108 -0.8424 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000200324412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 23:16:35 Heat of formation + Delta-G solvation = 18.275929 kcal Electronic energy + Delta-G solvation = -23705.096418 eV Core-core repulsion = 20224.554560 eV Total energy + Delta-G solvation = -3480.541858 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 284.163 amu Computer time = 6.06 seconds Orbital eigenvalues (eV) -39.25492 -39.03996 -34.63575 -33.26012 -32.04527 -31.70718 -30.80784 -29.61526 -29.06794 -27.53565 -26.75249 -26.42483 -23.43377 -22.44302 -21.75300 -19.64096 -18.82976 -16.62792 -15.45076 -15.34565 -15.07502 -14.81393 -14.58195 -14.46311 -13.87090 -13.72537 -13.57743 -13.31583 -12.90397 -12.82080 -12.54812 -12.28011 -12.20452 -11.99155 -11.83481 -11.79193 -11.59848 -11.52163 -11.30472 -11.25373 -11.18223 -11.04149 -10.60663 -10.22752 -10.14662 -10.00143 -9.98383 -9.11751 -8.72905 -8.68509 -8.41441 -7.76080 -6.35349 -5.65860 -4.61640 -1.17751 1.34001 1.38908 3.16852 3.25746 3.32037 3.83722 4.20091 4.29063 4.64399 4.82110 4.89435 4.91705 4.98700 5.32001 5.33948 5.35158 5.38854 5.46875 5.52323 5.60763 5.69909 5.78236 5.80977 5.88845 5.90721 5.93736 5.95211 6.05744 6.07539 6.09948 6.11571 6.29409 6.35049 6.52894 6.60320 6.62923 6.66653 6.84152 7.02011 7.26352 7.37154 7.76040 8.38077 9.49067 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020174 B = 0.005033 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.575089 B = 5561.798832 C = 6465.968102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.073 4.073 3 C -0.074 4.074 4 C -0.036 4.036 5 C -0.120 4.120 6 C -0.106 4.106 7 C 0.264 3.736 8 O -0.691 6.691 9 O -0.461 6.461 10 C 0.097 3.903 11 C -0.158 4.158 12 C -0.167 4.167 13 C 0.144 3.856 14 C -0.182 4.182 15 C -0.137 4.137 16 O -0.548 6.548 17 C 0.015 3.985 18 O -0.825 6.825 19 Si 0.893 3.107 20 H -0.293 1.293 21 H -0.278 1.278 22 H -0.274 1.274 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.094 0.906 26 H 0.159 0.841 27 H 0.147 0.853 28 H 0.158 0.842 29 H 0.313 0.687 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.371 0.629 43 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.898 -11.303 -10.396 15.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.073 4.073 3 C -0.091 4.091 4 C -0.037 4.037 5 C -0.138 4.138 6 C -0.124 4.124 7 C 0.254 3.746 8 O -0.517 6.517 9 O -0.406 6.406 10 C 0.047 3.953 11 C -0.215 4.215 12 C -0.225 4.225 13 C 0.103 3.897 14 C -0.239 4.239 15 C -0.194 4.194 16 O -0.354 6.354 17 C -0.104 4.104 18 O -0.773 6.773 19 Si 0.724 3.276 20 H -0.222 1.222 21 H -0.204 1.204 22 H -0.199 1.199 23 H 0.096 0.904 24 H 0.083 0.917 25 H 0.112 0.888 26 H 0.176 0.824 27 H 0.164 0.836 28 H 0.175 0.825 29 H 0.147 0.853 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.219 0.781 43 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -1.170 -10.604 -9.789 14.479 hybrid contribution -1.358 -1.511 -0.328 2.058 sum -2.528 -12.115 -10.116 15.984 Atomic orbital electron populations 1.20795 0.88235 1.02827 1.04184 1.20715 0.99832 0.86278 1.00489 1.21173 0.93696 0.93715 1.00549 1.22509 0.94868 0.99518 0.86784 1.21233 0.99950 0.88476 1.04119 1.21627 0.89274 0.99978 1.01527 1.28722 0.80576 0.54576 1.10748 1.93523 1.38556 1.23283 1.96334 1.94891 1.75989 1.52242 1.17507 1.21516 0.92482 0.91157 0.90146 1.22530 0.96584 1.03229 0.99200 1.22655 1.01371 0.99389 0.99055 1.21836 0.93725 0.85701 0.88483 1.22695 1.02528 1.02086 0.96632 1.21775 0.92666 1.01525 1.03431 1.86532 1.27208 1.57812 1.63805 1.23118 0.99060 0.88810 0.99395 1.95050 1.84736 1.69556 1.27913 0.87244 0.85949 0.77942 0.76488 1.22168 1.20427 1.19936 0.90393 0.91744 0.88770 0.82384 0.83580 0.82467 0.85329 0.90988 0.93728 0.92875 0.92315 0.92932 0.92419 0.91119 0.91827 0.91944 0.91079 0.92573 0.91121 0.78109 0.97459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 118. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 8.63 36.00 0.31 -1.37 16 2 C -0.07 -1.31 5.91 -104.29 -0.62 -1.92 16 3 C -0.07 -1.42 9.30 -39.63 -0.37 -1.79 16 4 C -0.04 -0.76 5.39 -104.52 -0.56 -1.33 16 5 C -0.12 -2.24 8.65 -39.63 -0.34 -2.58 16 6 C -0.11 -1.83 9.63 -39.25 -0.38 -2.21 16 7 C 0.26 4.90 7.98 -38.72 -0.31 4.59 16 8 O -0.69 -14.34 12.67 -57.73 -0.73 -15.07 16 9 O -0.46 -8.99 11.49 -62.79 -0.72 -9.71 16 10 C 0.10 1.48 0.76 -90.62 -0.07 1.41 16 11 C -0.16 -2.23 7.02 37.16 0.26 -1.97 16 12 C -0.17 -2.37 7.51 37.16 0.28 -2.09 16 13 C 0.14 1.96 0.71 -90.62 -0.06 1.90 16 14 C -0.18 -1.93 8.11 37.15 0.30 -1.63 16 15 C -0.14 -1.85 8.34 37.16 0.31 -1.54 16 16 O -0.55 -8.12 12.83 -44.85 -0.58 -8.69 16 17 C 0.02 0.38 2.88 36.00 0.10 0.48 16 18 O -0.83 -26.45 17.97 -35.23 -0.63 -27.09 16 19 Si 0.89 19.42 25.38 -169.99 -4.31 15.10 16 20 H -0.29 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.27 -6.04 7.04 56.52 0.40 -5.64 16 23 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 24 H 0.06 0.86 8.05 -51.93 -0.42 0.45 16 25 H 0.09 1.61 6.18 -51.93 -0.32 1.29 16 26 H 0.16 2.92 8.06 -52.48 -0.42 2.50 16 27 H 0.15 2.56 4.84 -52.49 -0.25 2.30 16 28 H 0.16 2.44 7.89 -52.49 -0.41 2.02 16 29 H 0.31 6.20 8.52 45.56 0.39 6.59 16 30 H 0.07 1.15 7.13 -51.93 -0.37 0.78 16 31 H 0.04 0.52 6.23 -51.93 -0.32 0.20 16 32 H 0.05 0.73 6.87 -51.93 -0.36 0.37 16 33 H 0.06 0.80 6.39 -51.93 -0.33 0.47 16 34 H 0.05 0.63 6.47 -51.93 -0.34 0.29 16 35 H 0.06 0.89 6.92 -51.93 -0.36 0.53 16 36 H 0.07 0.69 6.45 -51.93 -0.33 0.36 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.60 6.34 -51.93 -0.33 0.27 16 39 H 0.07 1.11 7.68 -51.93 -0.40 0.71 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.84 6.41 -51.93 -0.33 0.51 16 42 H 0.37 4.39 7.43 45.56 0.34 4.73 16 43 H 0.01 0.20 7.96 -51.93 -0.41 -0.21 16 LS Contribution 342.68 15.07 5.16 5.16 Total: -1.00 -33.55 342.68 -8.02 -41.56 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -5.06 Total: 8.77 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -1.15 Total: -10.04 kcal Atomic # 8 Polarization: -57.89 SS G_CDS: -2.66 Total: -60.55 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.31 Total: 15.10 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.55 -8.02 -41.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000200324412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.839 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.06 seconds