Wall clock time and date at job start Tue Mar 17 2020 23:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37953 * 120.06180 * 2 1 4 4 C 1.38393 * 120.12585 * 179.97438 * 3 2 1 5 5 C 1.38354 * 120.24163 * 359.96013 * 4 3 2 6 6 C 1.38000 * 120.12117 * 0.03945 * 5 4 3 7 7 C 1.39368 * 119.87615 * 359.97438 * 6 5 4 8 Xx 1.57002 * 120.12068 * 180.27492 * 7 6 5 9 8 O 1.42000 * 119.99947 * 162.91434 * 8 7 6 10 9 O 1.42001 * 119.99732 * 342.92007 * 8 7 6 11 10 C 1.42900 * 113.99606 * 264.95423 * 10 8 7 12 11 C 1.52998 * 109.47174 * 303.17483 * 11 10 8 13 12 C 1.53001 * 109.46900 * 63.17378 * 11 10 8 14 13 C 1.52999 * 109.47285 * 183.17397 * 11 10 8 15 14 C 1.52994 * 109.47579 * 180.02562 * 14 11 10 16 15 C 1.53005 * 109.46854 * 300.00018 * 14 11 10 17 16 O 1.42898 * 109.47162 * 59.99987 * 14 11 10 18 17 C 1.50696 * 119.88162 * 179.97438 * 4 3 2 19 18 O 1.42898 * 109.47246 * 64.99774 * 18 4 3 20 19 Si 1.86301 * 109.47264 * 185.00362 * 18 4 3 21 20 H 1.48497 * 109.47250 * 59.99756 * 20 18 4 22 21 H 1.48500 * 109.46979 * 180.02562 * 20 18 4 23 22 H 1.48500 * 109.46805 * 299.99992 * 20 18 4 24 23 H 1.08998 * 109.47443 * 264.56323 * 1 2 3 25 24 H 1.09005 * 109.47372 * 24.56943 * 1 2 3 26 25 H 1.09004 * 109.47423 * 144.56546 * 1 2 3 27 26 H 1.08006 * 119.94070 * 359.97438 * 3 2 1 28 27 H 1.07992 * 119.93558 * 180.02562 * 5 4 3 29 28 H 1.07994 * 120.05996 * 180.02562 * 6 5 4 30 29 H 0.96704 * 114.00115 * 185.49317 * 9 8 7 31 30 H 1.09000 * 109.47527 * 63.93093 * 12 11 10 32 31 H 1.09000 * 109.47312 * 183.93012 * 12 11 10 33 32 H 1.09001 * 109.47114 * 303.92548 * 12 11 10 34 33 H 1.08990 * 109.47445 * 60.74682 * 13 11 10 35 34 H 1.09005 * 109.46939 * 180.74567 * 13 11 10 36 35 H 1.09003 * 109.47072 * 300.73937 * 13 11 10 37 36 H 1.09003 * 109.47397 * 59.99055 * 15 14 11 38 37 H 1.08998 * 109.47700 * 179.97438 * 15 14 11 39 38 H 1.09004 * 109.47169 * 300.00036 * 15 14 11 40 39 H 1.09003 * 109.47177 * 59.99975 * 16 14 11 41 40 H 1.08998 * 109.47247 * 179.97438 * 16 14 11 42 41 H 1.08996 * 109.47211 * 299.99836 * 16 14 11 43 42 H 0.96695 * 113.99932 * 60.00193 * 17 14 11 44 43 H 1.09004 * 109.47210 * 305.00221 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1980 1.1940 0.0000 4 6 3.5819 1.1955 0.0005 5 6 4.2801 0.0010 0.0019 6 6 3.5990 -1.1992 0.0019 7 6 2.2053 -1.2066 0.0011 8 8 0.0515 -2.5983 0.3682 9 8 2.0918 -3.7710 -0.3470 10 6 1.9371 -4.1385 -1.7192 11 6 0.4483 -4.2604 -2.0499 12 6 2.5710 -3.0670 -2.6086 13 6 2.6265 -5.4814 -1.9685 14 6 2.4615 -5.8746 -3.4378 15 6 4.1154 -5.3595 -1.6378 16 8 2.0345 -6.4822 -1.1378 17 6 4.3312 2.5030 -0.0001 18 8 4.0736 3.2002 1.2204 19 14 6.1582 2.1716 -0.1523 20 1 6.4259 1.4471 -1.4206 21 1 6.8966 3.4601 -0.1523 22 1 6.6084 1.3436 0.9953 23 1 -0.3634 -0.0974 1.0230 24 1 -0.3634 0.9346 -0.4273 25 1 -0.3634 -0.8373 -0.5958 26 1 1.6580 2.1293 -0.0004 27 1 5.3600 0.0080 0.0027 28 1 4.1450 -2.1310 0.0034 29 1 -0.3213 -3.4888 0.4243 30 1 -0.0294 -3.2868 -1.9395 31 1 0.3313 -4.6081 -3.0763 32 1 -0.0178 -4.9731 -1.3695 33 1 3.6344 -2.9894 -2.3823 34 1 2.4414 -3.3407 -3.6557 35 1 2.0887 -2.1075 -2.4215 36 1 2.9133 -5.1111 -4.0712 37 1 2.9530 -6.8311 -3.6155 38 1 1.4009 -5.9613 -3.6738 39 1 4.2334 -5.0792 -0.5910 40 1 4.6065 -6.3163 -1.8149 41 1 4.5670 -4.5962 -2.2714 42 1 1.0892 -6.6135 -1.2932 43 1 4.0008 3.1108 -0.8424 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000200324412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 23:16:33 Heat of formation + Delta-G solvation = -10.630318 kcal Electronic energy + Delta-G solvation = -23706.349887 eV Core-core repulsion = 20224.554560 eV Total energy + Delta-G solvation = -3481.795327 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 284.163 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.73378 -40.28848 -35.96293 -34.82682 -33.63691 -33.00628 -32.12337 -30.94987 -30.85282 -28.61023 -28.16909 -27.52398 -25.16516 -23.62197 -23.23609 -21.22886 -20.03921 -17.86027 -17.00198 -16.82292 -16.20081 -16.04005 -15.93885 -15.73857 -15.44002 -15.17625 -14.88762 -14.56088 -14.37956 -14.19575 -13.92734 -13.48171 -13.32207 -13.23942 -13.13035 -13.02146 -12.96847 -12.80530 -12.71363 -12.59679 -12.38908 -12.18383 -12.01722 -11.80052 -11.77267 -11.70239 -11.20049 -10.40456 -10.28521 -10.17025 -9.99908 -9.20886 -8.43572 -7.82530 -6.03066 -2.65837 -0.17291 -0.10069 1.42022 1.55855 1.58664 2.30782 2.52338 3.20770 3.22371 3.47229 3.61997 3.79591 3.84972 3.87905 3.92638 4.04079 4.13991 4.23161 4.28705 4.37944 4.59254 4.65084 4.66099 4.70612 4.71816 4.79843 4.82143 4.87711 4.90485 4.93605 4.96623 5.05372 5.08887 5.19483 5.23317 5.26556 5.38987 5.41686 5.47550 5.56928 5.93400 6.69207 7.02706 7.64428 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020174 B = 0.005033 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.575089 B = 5561.798832 C = 6465.968102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.068 4.068 3 C -0.079 4.079 4 C -0.060 4.060 5 C -0.114 4.114 6 C -0.088 4.088 7 C 0.253 3.747 8 O -0.767 6.767 9 O -0.441 6.441 10 C 0.081 3.919 11 C -0.150 4.150 12 C -0.168 4.168 13 C 0.153 3.847 14 C -0.177 4.177 15 C -0.144 4.144 16 O -0.561 6.561 17 C -0.031 4.031 18 O -0.930 6.930 19 Si 0.941 3.059 20 H -0.236 1.236 21 H -0.301 1.301 22 H -0.277 1.277 23 H 0.068 0.932 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.155 0.845 27 H 0.166 0.834 28 H 0.183 0.817 29 H 0.301 0.699 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.045 0.955 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.385 0.615 43 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.506 -15.610 -13.822 20.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.068 4.068 3 C -0.097 4.097 4 C -0.061 4.061 5 C -0.131 4.131 6 C -0.106 4.106 7 C 0.243 3.757 8 O -0.592 6.592 9 O -0.386 6.386 10 C 0.031 3.969 11 C -0.207 4.207 12 C -0.225 4.225 13 C 0.111 3.889 14 C -0.233 4.233 15 C -0.200 4.200 16 O -0.369 6.369 17 C -0.147 4.147 18 O -0.880 6.880 19 Si 0.770 3.230 20 H -0.161 1.161 21 H -0.228 1.228 22 H -0.203 1.203 23 H 0.087 0.913 24 H 0.107 0.893 25 H 0.105 0.895 26 H 0.172 0.828 27 H 0.182 0.818 28 H 0.200 0.800 29 H 0.133 0.867 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.235 0.765 43 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 0.205 -14.932 -13.247 19.962 hybrid contribution -1.797 -0.822 0.412 2.019 sum -1.593 -15.754 -12.835 20.383 Atomic orbital electron populations 1.20746 0.87069 1.03778 1.03657 1.20736 1.00645 0.86058 0.99399 1.21123 0.93508 0.94183 1.00871 1.22246 0.95581 0.99248 0.89017 1.21256 1.00562 0.87723 1.03552 1.21711 0.88450 1.00361 1.00055 1.28969 0.80864 0.54833 1.11034 1.93552 1.45575 1.23487 1.96560 1.94877 1.74103 1.48526 1.21083 1.22277 0.93935 0.92493 0.88220 1.22485 0.94435 1.02462 1.01332 1.22677 1.01595 0.97709 1.00513 1.22144 0.93213 0.82685 0.90833 1.22696 1.04048 1.03338 0.93261 1.21911 0.92517 1.03298 1.02314 1.86524 1.28629 1.57252 1.64520 1.23707 1.04199 0.89841 0.96977 1.94965 1.90185 1.71785 1.31083 0.86364 0.80650 0.77388 0.78612 1.16077 1.22801 1.20324 0.91330 0.89306 0.89494 0.82774 0.81751 0.80014 0.86720 0.92986 0.90197 0.92816 0.91305 0.89575 0.93868 0.89464 0.90104 0.90533 0.93620 0.90797 0.88987 0.76452 0.98635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.23 8.63 71.23 0.61 -2.61 16 2 C -0.07 -2.51 5.91 -19.65 -0.12 -2.62 16 3 C -0.08 -3.20 9.30 22.24 0.21 -2.99 16 4 C -0.06 -2.63 5.39 -19.80 -0.11 -2.74 16 5 C -0.11 -4.09 8.65 22.24 0.19 -3.90 16 6 C -0.09 -2.87 9.63 22.49 0.22 -2.66 16 7 C 0.25 9.29 7.98 22.82 0.18 9.47 16 8 O -0.77 -33.32 12.67 -127.47 -1.62 -34.94 16 9 O -0.44 -16.11 11.49 -122.63 -1.41 -17.52 16 10 C 0.08 2.15 0.76 -10.79 -0.01 2.14 16 11 C -0.15 -3.72 7.02 71.98 0.51 -3.22 16 12 C -0.17 -3.93 7.51 71.98 0.54 -3.39 16 13 C 0.15 3.35 0.71 -10.79 -0.01 3.34 16 14 C -0.18 -2.52 8.11 71.98 0.58 -1.94 16 15 C -0.14 -3.11 8.34 71.98 0.60 -2.51 16 16 O -0.56 -14.10 12.83 -139.79 -1.79 -15.89 16 17 C -0.03 -1.60 2.88 71.23 0.21 -1.40 16 18 O -0.93 -64.16 17.97 -148.98 -2.68 -66.83 16 19 Si 0.94 40.12 25.38 68.60 1.74 41.87 16 20 H -0.24 -7.78 7.11 99.48 0.71 -7.07 16 21 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 22 H -0.28 -11.88 7.04 99.48 0.70 -11.18 16 23 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.09 2.45 8.05 -2.38 -0.02 2.43 16 25 H 0.09 3.09 6.18 -2.39 -0.01 3.08 16 26 H 0.15 6.20 8.06 -2.91 -0.02 6.18 16 27 H 0.17 5.30 4.84 -2.91 -0.01 5.29 16 28 H 0.18 4.96 7.89 -2.91 -0.02 4.93 16 29 H 0.30 12.65 8.52 -74.05 -0.63 12.02 16 30 H 0.05 1.58 7.13 -2.39 -0.02 1.57 16 31 H 0.08 1.44 6.23 -2.39 -0.01 1.42 16 32 H 0.05 1.34 6.87 -2.39 -0.02 1.32 16 33 H 0.07 1.50 6.39 -2.39 -0.02 1.48 16 34 H 0.09 1.50 6.47 -2.38 -0.02 1.48 16 35 H 0.04 1.19 6.92 -2.39 -0.02 1.18 16 36 H 0.09 1.04 6.45 -2.39 -0.02 1.02 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 0.93 6.34 -2.38 -0.02 0.92 16 39 H 0.04 1.23 7.68 -2.39 -0.02 1.21 16 40 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.09 1.61 6.41 -2.39 -0.02 1.60 16 42 H 0.39 7.44 7.43 -74.06 -0.55 6.89 16 43 H 0.00 -0.17 7.96 -2.38 -0.02 -0.19 16 Total: -1.00 -79.53 342.68 -1.54 -81.07 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.60 Total: 27.26 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: 3.61 Total: -15.02 kcal Atomic # 8 Polarization: -127.69 SS G_CDS: -7.50 Total: -135.18 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 1.74 Total: 41.87 kcal Total: -79.53 -1.54 -81.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000200324412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.444 kcal (2) G-P(sol) polarization free energy of solvation -79.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds