Wall clock time and date at job start Tue Mar 17 2020 21:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86300 * 109.47341 * 2 1 4 4 H 1.48500 * 109.46912 * 60.00523 * 3 2 1 5 5 H 1.48503 * 109.46942 * 180.02562 * 3 2 1 6 6 H 1.48503 * 109.47262 * 300.00339 * 3 2 1 7 7 C 1.50695 * 109.47325 * 120.00585 * 2 1 3 8 8 C 1.34519 * 125.79300 * 64.70753 * 7 2 1 9 9 C 1.41375 * 106.84399 * 179.89458 * 8 7 2 10 10 C 1.34518 * 106.84201 * 0.37191 * 9 8 7 11 11 S 1.76191 * 125.79119 * 179.79176 * 10 9 8 12 12 O 1.42101 * 106.40224 * 203.54108 * 11 10 9 13 13 O 1.42097 * 106.40356 * 336.46312 * 11 10 9 14 14 N 1.65600 * 107.21694 * 90.00338 * 11 10 9 15 15 C 1.47233 * 121.71613 * 269.71330 * 14 11 10 16 16 C 1.53543 * 109.15368 * 131.39016 * 15 14 11 17 17 N 1.47451 * 109.70588 * 48.73062 * 16 15 14 18 18 C 1.48066 * 109.72096 * 48.84070 * 17 16 15 19 19 C 1.54093 * 106.83374 * 269.95711 * 18 17 16 20 20 C 1.48384 * 121.71699 * 90.00244 * 14 11 10 21 21 H 1.08990 * 114.03422 * 5.77812 * 20 14 11 22 22 C 1.48804 * 108.52623 * 294.30922 * 17 16 15 23 23 O 1.34301 * 125.79044 * 245.02378 * 7 2 1 24 24 H 0.96702 * 113.99767 * 300.00194 * 1 2 3 25 25 H 1.09004 * 109.46715 * 240.00184 * 2 1 3 26 26 H 1.08001 * 126.57300 * 0.03243 * 8 7 2 27 27 H 1.08000 * 126.58295 * 180.16860 * 9 8 7 28 28 H 1.09000 * 109.49031 * 251.43716 * 15 14 11 29 29 H 1.08998 * 109.48531 * 11.48805 * 15 14 11 30 30 H 1.08995 * 109.58505 * 288.57207 * 16 15 14 31 31 H 1.09010 * 109.33374 * 168.71995 * 16 15 14 32 32 H 1.08999 * 109.99223 * 150.61026 * 18 17 16 33 33 H 1.09003 * 110.01977 * 29.31995 * 18 17 16 34 34 H 1.09002 * 110.41961 * 241.92179 * 19 18 17 35 35 H 1.08998 * 110.42426 * 119.44581 * 19 18 17 36 36 H 1.09004 * 110.98122 * 316.40751 * 22 17 16 37 37 H 1.09000 * 110.98117 * 192.62495 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 1 1.5552 2.4564 1.2126 5 1 3.5351 1.7563 -0.0006 6 1 1.5550 2.4566 -1.2125 7 6 1.9314 -0.7105 1.2303 8 6 1.7541 -2.0135 1.5139 9 6 2.3869 -2.2523 2.7553 10 6 2.9060 -1.0792 3.1603 11 16 3.8005 -0.8091 4.6540 12 8 3.6760 0.5748 4.9516 13 8 3.4022 -1.8360 5.5517 14 7 5.4011 -1.0736 4.3214 15 6 6.0134 -2.4040 4.4726 16 6 6.8130 -2.7376 3.2049 17 7 7.6830 -1.6005 2.8522 18 6 8.4318 -1.1543 4.0491 19 6 7.5684 -0.0823 4.7417 20 6 6.2934 0.0193 3.8618 21 1 5.8263 1.0040 3.8637 22 6 6.8229 -0.4462 2.4752 23 8 2.6269 -0.1490 2.2326 24 1 -0.3933 0.4417 0.7651 25 1 1.7923 -0.5138 -0.8901 26 1 1.2309 -2.7385 0.9081 27 1 2.4403 -3.1949 3.2798 28 1 6.6789 -2.4021 5.3359 29 1 5.2318 -3.1497 4.6174 30 1 6.1266 -2.9377 2.3822 31 1 7.4262 -3.6203 3.3868 32 1 9.3892 -0.7266 3.7516 33 1 8.5932 -1.9955 4.7233 34 1 8.0929 0.8730 4.7629 35 1 7.3090 -0.3974 5.7523 36 1 6.0031 -0.7643 1.8310 37 1 7.4099 0.3385 1.9982 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381784541.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 21:08:46 Heat of formation + Delta-G solvation = -56.802324 kcal Electronic energy + Delta-G solvation = -24463.564330 eV Core-core repulsion = 20837.152597 eV Total energy + Delta-G solvation = -3626.411733 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 302.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.93659 -41.73510 -38.52609 -38.21849 -37.09400 -35.03968 -34.39626 -33.29226 -31.99175 -30.31113 -27.56045 -27.21109 -24.83726 -23.43292 -22.53585 -22.00222 -21.75804 -20.35735 -19.67404 -18.91960 -18.36153 -17.72883 -17.36565 -17.13707 -16.79394 -16.22357 -15.93361 -15.82583 -15.70765 -15.18674 -14.89231 -14.60868 -14.38031 -14.15274 -14.11173 -13.90759 -13.54296 -13.36568 -13.18390 -13.15210 -12.78220 -12.65753 -12.47208 -12.41135 -12.29930 -12.14299 -12.11681 -11.86388 -11.34275 -10.91329 -10.85168 -10.21693 -9.46826 -1.04328 -0.14583 0.83138 1.08529 1.28040 1.35959 1.52691 1.76655 1.81009 2.44823 2.82424 3.03740 3.10343 3.28176 3.51146 3.59381 3.63826 3.65041 3.69236 3.85065 3.99567 4.11107 4.17329 4.20084 4.26674 4.38321 4.44675 4.48081 4.49498 4.57526 4.69890 4.74000 4.79442 4.91159 4.95692 5.04286 5.23047 5.53639 5.60353 5.77348 6.16954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.525 6.525 2 C -0.047 4.047 3 Si 0.946 3.054 4 H -0.242 1.242 5 H -0.241 1.241 6 H -0.239 1.239 7 C -0.007 4.007 8 C -0.192 4.192 9 C -0.082 4.082 10 C -0.578 4.578 11 S 2.718 3.282 12 O -0.934 6.934 13 O -0.930 6.930 14 N -0.993 5.993 15 C 0.086 3.914 16 C 0.022 3.978 17 N -0.495 5.495 18 C 0.027 3.973 19 C -0.157 4.157 20 C 0.109 3.891 21 H 0.133 0.867 22 C 0.019 3.981 23 O -0.121 6.121 24 H 0.384 0.616 25 H 0.142 0.858 26 H 0.165 0.835 27 H 0.168 0.832 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.598 -1.091 -2.360 3.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.331 6.331 2 C -0.157 4.157 3 Si 0.764 3.236 4 H -0.164 1.164 5 H -0.164 1.164 6 H -0.162 1.162 7 C -0.062 4.062 8 C -0.212 4.212 9 C -0.103 4.103 10 C -0.707 4.707 11 S 2.802 3.198 12 O -0.924 6.924 13 O -0.920 6.920 14 N -0.833 5.833 15 C -0.040 4.040 16 C -0.108 4.108 17 N -0.216 5.216 18 C -0.101 4.101 19 C -0.197 4.197 20 C 0.003 3.997 21 H 0.151 0.849 22 C -0.111 4.111 23 O -0.016 6.016 24 H 0.232 0.768 25 H 0.160 0.840 26 H 0.182 0.818 27 H 0.186 0.814 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.048 -0.225 -2.603 4.014 hybrid contribution -1.104 -0.670 0.535 1.398 sum 1.943 -0.894 -2.068 2.975 Atomic orbital electron populations 1.86588 1.15726 1.81628 1.49129 1.24552 0.85491 1.12313 0.93389 0.85679 0.81555 0.73676 0.82675 1.16426 1.16439 1.16172 1.23686 0.96739 0.94155 0.91571 1.21867 1.05048 0.96122 0.98119 1.22052 0.94866 0.97987 0.95431 1.35974 1.23288 0.95504 1.15971 1.01805 0.71824 0.73955 0.72220 1.93613 1.85091 1.31835 1.81887 1.93668 1.81809 1.59561 1.56959 1.58470 1.25127 1.16587 1.83122 1.22275 0.99290 0.82433 1.00019 1.22969 0.96093 0.95376 0.96357 1.66007 1.20886 1.05069 1.29608 1.23106 0.98125 0.97660 0.91253 1.23250 0.95274 1.01234 0.99946 1.23523 0.90521 0.90556 0.95133 0.84903 1.23937 0.97001 0.94583 0.95582 1.84100 1.56621 1.35833 1.25019 0.76809 0.84025 0.81768 0.81399 0.89869 0.88642 0.90005 0.88797 0.89509 0.90587 0.89509 0.90053 0.89739 0.88394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.47 12.88 -35.23 -0.45 0.01 16 2 C -0.05 0.07 2.99 36.00 0.11 0.17 16 3 Si 0.95 -0.85 27.40 -169.99 -4.66 -5.51 16 4 H -0.24 -0.11 7.11 56.52 0.40 0.29 16 5 H -0.24 0.08 7.11 56.52 0.40 0.48 16 6 H -0.24 0.10 7.11 56.52 0.40 0.50 16 7 C -0.01 0.00 6.20 -35.63 -0.22 -0.23 16 8 C -0.19 -0.04 10.81 -39.70 -0.43 -0.47 16 9 C -0.08 -0.04 10.63 -39.70 -0.42 -0.46 16 10 C -0.58 -0.95 7.36 29.42 0.22 -0.73 16 11 S 2.72 5.09 5.91 -107.50 -0.64 4.46 16 12 O -0.93 -4.39 16.92 -57.22 -0.97 -5.36 16 13 O -0.93 -3.45 16.72 -57.17 -0.96 -4.41 16 14 N -0.99 0.59 3.03 -102.47 -0.31 0.28 16 15 C 0.09 -0.18 5.70 -3.36 -0.02 -0.19 16 16 C 0.02 -0.05 5.93 -3.24 -0.02 -0.07 16 17 N -0.50 0.54 5.97 -228.78 -1.37 -0.83 16 18 C 0.03 -0.06 6.21 -2.61 -0.02 -0.07 16 19 C -0.16 0.33 5.96 -24.97 -0.15 0.18 16 20 C 0.11 -0.13 4.51 -64.34 -0.29 -0.42 16 21 H 0.13 -0.18 7.40 -51.93 -0.38 -0.57 16 22 C 0.02 -0.03 6.53 -1.41 -0.01 -0.04 16 23 O -0.12 -0.26 9.07 5.70 0.05 -0.20 16 24 H 0.38 -1.44 8.70 45.56 0.40 -1.04 16 25 H 0.14 -0.47 7.96 -51.93 -0.41 -0.89 16 26 H 0.16 -0.24 8.06 -52.49 -0.42 -0.67 16 27 H 0.17 -0.27 8.06 -52.49 -0.42 -0.69 16 28 H 0.08 -0.22 6.22 -51.93 -0.32 -0.54 16 29 H 0.10 -0.26 7.34 -51.93 -0.38 -0.64 16 30 H 0.08 -0.19 7.91 -51.93 -0.41 -0.60 16 31 H 0.09 -0.29 8.14 -51.92 -0.42 -0.71 16 32 H 0.09 -0.19 8.14 -51.93 -0.42 -0.61 16 33 H 0.08 -0.20 7.02 -51.93 -0.36 -0.57 16 34 H 0.09 -0.25 8.14 -51.93 -0.42 -0.67 16 35 H 0.08 -0.15 7.47 -51.93 -0.39 -0.54 16 36 H 0.08 -0.11 7.84 -51.93 -0.41 -0.52 16 37 H 0.10 -0.21 8.14 -51.93 -0.42 -0.64 16 LS Contribution 308.59 15.07 4.65 4.65 Total: 0.00 -7.96 308.59 -9.90 -17.86 By element: Atomic # 1 Polarization: -4.61 SS G_CDS: -4.01 Total: -8.62 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -1.25 Total: -2.33 kcal Atomic # 7 Polarization: 1.12 SS G_CDS: -1.68 Total: -0.55 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -2.33 Total: -9.96 kcal Atomic # 14 Polarization: -0.85 SS G_CDS: -4.66 Total: -5.51 kcal Atomic # 16 Polarization: 5.09 SS G_CDS: -0.64 Total: 4.46 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -7.96 -9.90 -17.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381784541.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.943 kcal (2) G-P(sol) polarization free energy of solvation -7.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds