Wall clock time and date at job start Tue Mar 17 2020 21:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86300 * 109.47341 * 2 1 4 4 H 1.48500 * 109.46912 * 60.00523 * 3 2 1 5 5 H 1.48503 * 109.46942 * 180.02562 * 3 2 1 6 6 H 1.48503 * 109.47262 * 300.00339 * 3 2 1 7 7 C 1.50695 * 109.47325 * 120.00585 * 2 1 3 8 8 C 1.34519 * 125.79300 * 64.70753 * 7 2 1 9 9 C 1.41375 * 106.84399 * 179.89458 * 8 7 2 10 10 C 1.34518 * 106.84201 * 0.37191 * 9 8 7 11 11 S 1.76191 * 125.79119 * 179.79176 * 10 9 8 12 12 O 1.42101 * 106.40224 * 203.54108 * 11 10 9 13 13 O 1.42097 * 106.40356 * 336.46312 * 11 10 9 14 14 N 1.65600 * 107.21694 * 90.00338 * 11 10 9 15 15 C 1.47233 * 121.71613 * 269.71330 * 14 11 10 16 16 C 1.53543 * 109.15368 * 131.39016 * 15 14 11 17 17 N 1.47451 * 109.70588 * 48.73062 * 16 15 14 18 18 C 1.48066 * 109.72096 * 48.84070 * 17 16 15 19 19 C 1.54093 * 106.83374 * 269.95711 * 18 17 16 20 20 C 1.48384 * 121.71699 * 90.00244 * 14 11 10 21 21 H 1.08990 * 114.03422 * 5.77812 * 20 14 11 22 22 C 1.48804 * 108.52623 * 294.30922 * 17 16 15 23 23 O 1.34301 * 125.79044 * 245.02378 * 7 2 1 24 24 H 0.96702 * 113.99767 * 300.00194 * 1 2 3 25 25 H 1.09004 * 109.46715 * 240.00184 * 2 1 3 26 26 H 1.08001 * 126.57300 * 0.03243 * 8 7 2 27 27 H 1.08000 * 126.58295 * 180.16860 * 9 8 7 28 28 H 1.09000 * 109.49031 * 251.43716 * 15 14 11 29 29 H 1.08998 * 109.48531 * 11.48805 * 15 14 11 30 30 H 1.08995 * 109.58505 * 288.57207 * 16 15 14 31 31 H 1.09010 * 109.33374 * 168.71995 * 16 15 14 32 32 H 1.08999 * 109.99223 * 150.61026 * 18 17 16 33 33 H 1.09003 * 110.01977 * 29.31995 * 18 17 16 34 34 H 1.09002 * 110.41961 * 241.92179 * 19 18 17 35 35 H 1.08998 * 110.42426 * 119.44581 * 19 18 17 36 36 H 1.09004 * 110.98122 * 316.40751 * 22 17 16 37 37 H 1.09000 * 110.98117 * 192.62495 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 1 1.5552 2.4564 1.2126 5 1 3.5351 1.7563 -0.0006 6 1 1.5550 2.4566 -1.2125 7 6 1.9314 -0.7105 1.2303 8 6 1.7541 -2.0135 1.5139 9 6 2.3869 -2.2523 2.7553 10 6 2.9060 -1.0792 3.1603 11 16 3.8005 -0.8091 4.6540 12 8 3.6760 0.5748 4.9516 13 8 3.4022 -1.8360 5.5517 14 7 5.4011 -1.0736 4.3214 15 6 6.0134 -2.4040 4.4726 16 6 6.8130 -2.7376 3.2049 17 7 7.6830 -1.6005 2.8522 18 6 8.4318 -1.1543 4.0491 19 6 7.5684 -0.0823 4.7417 20 6 6.2934 0.0193 3.8618 21 1 5.8263 1.0040 3.8637 22 6 6.8229 -0.4462 2.4752 23 8 2.6269 -0.1490 2.2326 24 1 -0.3933 0.4417 0.7651 25 1 1.7923 -0.5138 -0.8901 26 1 1.2309 -2.7385 0.9081 27 1 2.4403 -3.1949 3.2798 28 1 6.6789 -2.4021 5.3359 29 1 5.2318 -3.1497 4.6174 30 1 6.1266 -2.9377 2.3822 31 1 7.4262 -3.6203 3.3868 32 1 9.3892 -0.7266 3.7516 33 1 8.5932 -1.9955 4.7233 34 1 8.0929 0.8730 4.7629 35 1 7.3090 -0.3974 5.7523 36 1 6.0031 -0.7643 1.8310 37 1 7.4099 0.3385 1.9982 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381784541.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 21:08:45 Heat of formation + Delta-G solvation = -61.103699 kcal Electronic energy + Delta-G solvation = -24463.750852 eV Core-core repulsion = 20837.152597 eV Total energy + Delta-G solvation = -3626.598255 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 302.094 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.97312 -41.60587 -38.74494 -38.12393 -37.32911 -34.96487 -34.42804 -33.14277 -31.98294 -30.16271 -27.46042 -27.16441 -24.69958 -23.45676 -22.53939 -21.87999 -21.67754 -20.39316 -19.66927 -18.97618 -18.33665 -17.75145 -17.31134 -17.16264 -16.78617 -16.15125 -15.85949 -15.74178 -15.60785 -15.21747 -14.90020 -14.50646 -14.34134 -14.13449 -13.95869 -13.88190 -13.64359 -13.57483 -13.23280 -13.17835 -12.75572 -12.64942 -12.33996 -12.31277 -12.27172 -12.13262 -11.95579 -11.70316 -11.36972 -10.83478 -10.77244 -10.23007 -9.34787 -1.14483 -0.19799 0.91116 1.09410 1.29031 1.38323 1.53390 1.76150 1.83821 2.34478 2.95268 3.03069 3.21842 3.38644 3.56876 3.66521 3.70686 3.77085 3.84280 4.01791 4.14054 4.19576 4.28748 4.36701 4.39926 4.48393 4.53508 4.55289 4.66755 4.70310 4.84906 4.90361 4.96695 5.07518 5.08340 5.10625 5.33898 5.52324 5.75570 5.94223 6.39500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.038 4.038 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.251 1.251 6 H -0.243 1.243 7 C -0.013 4.013 8 C -0.196 4.196 9 C -0.080 4.080 10 C -0.595 4.595 11 S 2.732 3.268 12 O -0.970 6.970 13 O -0.952 6.952 14 N -0.987 5.987 15 C 0.082 3.918 16 C 0.024 3.976 17 N -0.508 5.508 18 C 0.028 3.972 19 C -0.154 4.154 20 C 0.103 3.897 21 H 0.129 0.871 22 C 0.020 3.980 23 O -0.138 6.138 24 H 0.394 0.606 25 H 0.166 0.834 26 H 0.183 0.817 27 H 0.187 0.813 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.891 -2.074 -3.068 4.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.149 4.149 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.175 1.175 6 H -0.166 1.166 7 C -0.066 4.066 8 C -0.215 4.215 9 C -0.101 4.101 10 C -0.725 4.725 11 S 2.819 3.181 12 O -0.960 6.960 13 O -0.943 6.943 14 N -0.828 5.828 15 C -0.044 4.044 16 C -0.106 4.106 17 N -0.228 5.228 18 C -0.100 4.100 19 C -0.194 4.194 20 C -0.004 4.004 21 H 0.147 0.853 22 C -0.109 4.109 23 O -0.034 6.034 24 H 0.244 0.756 25 H 0.183 0.817 26 H 0.201 0.799 27 H 0.204 0.796 28 H 0.109 0.891 29 H 0.121 0.879 30 H 0.100 0.900 31 H 0.124 0.876 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.344 -1.204 -3.297 4.848 hybrid contribution -1.188 -0.351 0.726 1.436 sum 2.156 -1.555 -2.571 3.699 Atomic orbital electron populations 1.86563 1.15818 1.81814 1.49943 1.24585 0.85301 1.11482 0.93485 0.85362 0.80625 0.74045 0.81034 1.19120 1.17456 1.16617 1.24116 0.96270 0.94622 0.91636 1.22150 1.04953 0.96319 0.98124 1.22382 0.93904 0.98267 0.95543 1.35813 1.24519 0.96060 1.16145 1.01052 0.72205 0.72736 0.72146 1.93560 1.85882 1.33732 1.82861 1.93627 1.82539 1.59809 1.58289 1.58313 1.24023 1.17478 1.83008 1.22461 0.99626 0.81721 1.00579 1.22999 0.96085 0.95396 0.96113 1.66009 1.21240 1.05380 1.30199 1.23118 0.97951 0.97854 0.91063 1.23247 0.94786 1.01818 0.99558 1.23651 0.90653 0.90288 0.95766 0.85282 1.23934 0.96965 0.94781 0.95263 1.84089 1.57281 1.36445 1.25581 0.75587 0.81689 0.79937 0.79613 0.89088 0.87911 0.90001 0.87639 0.89362 0.89862 0.88646 0.90281 0.90065 0.87805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 1.31 12.88 -148.98 -1.92 -0.61 16 2 C -0.04 0.13 2.99 71.23 0.21 0.34 16 3 Si 0.97 -1.13 27.40 68.60 1.88 0.75 16 4 H -0.27 -0.75 7.11 99.48 0.71 -0.04 16 5 H -0.25 -0.06 7.11 99.48 0.71 0.65 16 6 H -0.24 0.15 7.11 99.48 0.71 0.85 16 7 C -0.01 -0.01 6.20 24.83 0.15 0.14 16 8 C -0.20 0.06 10.81 22.19 0.24 0.30 16 9 C -0.08 -0.06 10.63 22.19 0.24 0.17 16 10 C -0.60 -2.42 7.36 66.97 0.49 -1.92 16 11 S 2.73 13.75 5.91 -56.49 -0.33 13.42 16 12 O -0.97 -11.08 16.92 -127.96 -2.16 -13.25 16 13 O -0.95 -8.02 16.72 -128.00 -2.14 -10.16 16 14 N -0.99 0.52 3.03 -478.09 -1.45 -0.92 16 15 C 0.08 -0.34 5.70 86.42 0.49 0.15 16 16 C 0.02 -0.12 5.93 86.38 0.51 0.39 16 17 N -0.51 1.27 5.97 -877.71 -5.24 -3.97 16 18 C 0.03 -0.13 6.21 86.45 0.54 0.41 16 19 C -0.15 0.63 5.96 31.74 0.19 0.82 16 20 C 0.10 -0.17 4.51 46.28 0.21 0.03 16 21 H 0.13 -0.16 7.40 -2.39 -0.02 -0.17 16 22 C 0.02 -0.05 6.53 86.81 0.57 0.51 16 23 O -0.14 -0.71 9.07 -2.50 -0.02 -0.73 16 24 H 0.39 -3.00 8.70 -74.06 -0.64 -3.64 16 25 H 0.17 -1.36 7.96 -2.38 -0.02 -1.37 16 26 H 0.18 -0.84 8.06 -2.91 -0.02 -0.86 16 27 H 0.19 -0.71 8.06 -2.91 -0.02 -0.73 16 28 H 0.09 -0.51 6.22 -2.39 -0.01 -0.53 16 29 H 0.10 -0.58 7.34 -2.39 -0.02 -0.60 16 30 H 0.08 -0.40 7.91 -2.39 -0.02 -0.42 16 31 H 0.11 -0.76 8.14 -2.38 -0.02 -0.78 16 32 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 33 H 0.08 -0.51 7.02 -2.39 -0.02 -0.52 16 34 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 35 H 0.08 -0.27 7.47 -2.39 -0.02 -0.29 16 36 H 0.08 -0.17 7.84 -2.38 -0.02 -0.19 16 37 H 0.10 -0.43 8.14 -2.39 -0.02 -0.45 16 Total: 0.00 -17.91 308.59 -6.33 -24.25 By element: Atomic # 1 Polarization: -11.32 SS G_CDS: 1.21 Total: -10.11 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 3.84 Total: 1.35 kcal Atomic # 7 Polarization: 1.79 SS G_CDS: -6.69 Total: -4.89 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -6.25 Total: -24.75 kcal Atomic # 14 Polarization: -1.13 SS G_CDS: 1.88 Total: 0.75 kcal Atomic # 16 Polarization: 13.75 SS G_CDS: -0.33 Total: 13.42 kcal Total: -17.91 -6.33 -24.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381784541.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.857 kcal (2) G-P(sol) polarization free energy of solvation -17.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds