Wall clock time and date at job start Tue Mar 17 2020 23:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48415 * 114.47586 * 2 1 4 4 C 1.51537 * 104.27474 * 140.78058 * 3 2 1 5 5 O 1.20825 * 125.84952 * 147.66834 * 4 3 2 6 6 O 1.34401 * 108.29517 * 327.65340 * 4 3 2 7 Xx 1.42603 * 109.17812 * 34.42000 * 6 4 3 8 7 O 1.42610 * 109.34852 * 89.93062 * 7 6 4 9 8 C 1.34399 * 109.16869 * 270.10168 * 8 7 6 10 9 O 1.20832 * 125.85313 * 145.52172 * 9 8 7 11 10 C 1.48416 * 113.73829 * 234.35289 * 2 1 3 12 11 C 1.59699 * 112.31645 * 215.31770 * 7 6 4 13 12 H 1.09006 * 109.46882 * 63.75912 * 12 7 6 14 13 C 1.53002 * 109.47203 * 183.75564 * 12 7 6 15 14 O 1.42904 * 109.46996 * 187.70367 * 14 12 7 16 15 Si 1.86300 * 109.46888 * 67.70527 * 14 12 7 17 16 H 1.48498 * 109.47351 * 49.85908 * 16 14 12 18 17 H 1.48501 * 109.46953 * 169.85712 * 16 14 12 19 18 H 1.48496 * 109.47281 * 289.85513 * 16 14 12 20 19 C 1.52994 * 109.47301 * 303.75600 * 12 7 6 21 20 C 1.53001 * 109.47384 * 181.76068 * 20 12 7 22 21 C 1.53005 * 109.47092 * 180.02562 * 21 20 12 23 22 C 1.53007 * 109.46970 * 60.00433 * 22 21 20 24 23 C 1.53001 * 109.46859 * 299.99710 * 23 22 21 25 24 C 1.52995 * 109.47064 * 60.00316 * 24 23 22 26 25 H 1.08999 * 109.47254 * 286.38659 * 1 2 3 27 26 H 1.09000 * 109.46991 * 46.38667 * 1 2 3 28 27 H 1.09003 * 109.47177 * 166.38478 * 1 2 3 29 28 H 1.08998 * 110.46943 * 259.48116 * 3 2 1 30 29 H 1.08997 * 110.47313 * 22.07869 * 3 2 1 31 30 H 1.09008 * 110.46614 * 100.95772 * 11 2 1 32 31 H 1.08994 * 110.47726 * 338.35474 * 11 2 1 33 32 H 1.09001 * 109.47421 * 307.70419 * 14 12 7 34 33 H 1.08998 * 109.47532 * 301.76566 * 20 12 7 35 34 H 1.09006 * 109.46887 * 300.00184 * 21 20 12 36 35 H 1.08994 * 109.46972 * 60.00237 * 21 20 12 37 36 H 1.08993 * 109.47010 * 299.99851 * 22 21 20 38 37 H 1.09000 * 109.46461 * 180.02562 * 22 21 20 39 38 H 1.09002 * 109.46555 * 180.02562 * 23 22 21 40 39 H 1.08998 * 109.47064 * 59.99600 * 23 22 21 41 40 H 1.09006 * 109.46887 * 300.00333 * 24 23 22 42 41 H 1.08994 * 109.46972 * 180.02562 * 24 23 22 43 42 H 1.09004 * 109.46909 * 179.97438 * 25 24 23 44 43 H 1.08997 * 109.47463 * 60.00253 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0839 1.3508 0.0000 4 6 3.2742 1.2195 0.9286 5 8 4.3199 1.8163 0.8274 6 8 2.9673 0.3256 1.8841 7 8 2.9499 -1.7430 0.8185 8 6 3.2519 -1.4874 -0.4660 9 8 4.2909 -1.7642 -1.0173 10 6 2.0665 -0.7918 -1.1040 11 6 1.0413 -1.2148 2.3650 12 1 0.3624 -0.4013 2.6209 13 6 0.2485 -2.3613 1.7341 14 8 -0.8426 -2.7122 2.5877 15 14 1.3625 -3.8378 1.5115 16 1 2.0761 -4.1159 2.7838 17 1 0.5476 -5.0200 1.1324 18 1 2.3517 -3.5546 0.4408 19 6 1.7395 -1.7140 3.6315 20 6 0.6955 -2.2583 4.6087 21 6 1.3937 -2.7569 5.8755 22 6 2.1502 -1.5992 6.5301 23 6 3.1942 -1.0549 5.5530 24 6 2.4960 -0.5564 4.2862 25 1 -0.3634 0.2899 0.9859 26 1 -0.3633 0.7089 -0.7440 27 1 -0.3634 -0.9988 -0.2419 28 1 2.4115 1.6205 -1.0040 29 1 1.3806 2.0898 0.3838 30 1 2.3976 -0.1348 -1.9084 31 1 1.3512 -1.5239 -1.4786 32 1 -0.1359 -2.0466 0.7639 33 1 2.4414 -2.5062 3.3713 34 1 -0.0065 -1.4659 4.8689 35 1 0.1562 -3.0826 4.1422 36 1 2.0958 -3.5490 5.6156 37 1 0.6499 -3.1450 6.5714 38 1 2.6480 -1.9546 7.4324 39 1 1.4480 -0.8071 6.7900 40 1 3.8964 -1.8472 5.2931 41 1 3.7334 -0.2306 6.0195 42 1 3.2398 -0.1682 3.5903 43 1 1.7939 0.2358 4.5461 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261508066.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 23:10:30 Heat of formation + Delta-G solvation = -45.364441 kcal Electronic energy + Delta-G solvation = -28082.246061 eV Core-core repulsion = 24214.836446 eV Total energy + Delta-G solvation = -3867.409615 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 301.158 amu Computer time = 3.97 seconds Orbital eigenvalues (eV) -38.72047 -38.25709 -37.06107 -35.83027 -34.23029 -32.73818 -32.29539 -30.92667 -30.21515 -28.17687 -27.63747 -26.50244 -22.66962 -22.20026 -22.04051 -19.86533 -19.54706 -19.00287 -18.79743 -15.87930 -15.60742 -15.53372 -15.30796 -14.62565 -14.25204 -14.18609 -14.10348 -13.96782 -13.69956 -13.59055 -13.49595 -13.38534 -13.00491 -12.60703 -12.39087 -12.12314 -11.90576 -11.65474 -11.62376 -11.46315 -11.02556 -10.91046 -10.84996 -10.68074 -10.50862 -10.42628 -10.06940 -9.72524 -9.69229 -9.34883 -8.90579 -8.70737 -8.36558 -7.85809 -7.57700 -7.41288 -6.77235 -4.89102 0.04796 2.89139 2.96036 3.21808 3.55092 3.71902 4.18420 4.36158 4.59273 4.89967 4.98943 5.16514 5.21642 5.30663 5.33968 5.36421 5.49979 5.57134 5.61557 5.67054 5.73888 5.79208 5.86898 5.87470 5.89983 5.91414 5.95038 6.00694 6.02252 6.22957 6.37047 6.40056 6.42087 6.49171 6.55584 6.75093 6.90378 7.09694 7.16004 7.36990 7.89585 8.02141 8.53120 9.29116 9.68713 Molecular weight = 301.16amu Principal moments of inertia in cm(-1) A = 0.014568 B = 0.008240 C = 0.006814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.573489 B = 3397.266250 C = 4108.026626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.512 5.512 3 C 0.008 3.992 4 C 0.470 3.530 5 O -0.560 6.560 6 O -0.546 6.546 7 O -0.462 6.462 8 C 0.463 3.537 9 O -0.525 6.525 10 C 0.000 4.000 11 C 0.419 3.581 12 H 0.118 0.882 13 C -0.107 4.107 14 O -0.680 6.680 15 Si 0.971 3.029 16 H -0.261 1.261 17 H -0.282 1.282 18 H -0.169 1.169 19 C -0.142 4.142 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.125 4.125 25 H 0.069 0.931 26 H 0.025 0.975 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.065 0.935 35 H 0.122 0.878 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.126 0.874 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.959 -0.707 3.721 7.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.239 5.239 3 C -0.121 4.121 4 C 0.309 3.691 5 O -0.461 6.461 6 O -0.479 6.479 7 O -0.399 6.399 8 C 0.303 3.697 9 O -0.423 6.423 10 C -0.129 4.129 11 C 0.393 3.607 12 H 0.136 0.864 13 C -0.220 4.220 14 O -0.627 6.627 15 Si 0.811 3.189 16 H -0.186 1.186 17 H -0.211 1.211 18 H -0.107 1.107 19 C -0.160 4.160 20 C -0.149 4.149 21 C -0.155 4.155 22 C -0.159 4.159 23 C -0.155 4.155 24 C -0.162 4.162 25 H 0.088 0.912 26 H 0.044 0.956 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.126 0.874 34 H 0.083 0.917 35 H 0.139 0.861 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.143 0.857 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.925 -1.858 4.566 7.708 hybrid contribution -0.278 1.331 -1.210 1.820 sum -6.204 -0.527 3.356 7.073 Atomic orbital electron populations 1.22936 0.86803 1.02091 1.01335 1.61419 1.05819 1.12931 1.43691 1.23584 0.99170 0.89188 1.00190 1.21961 0.84160 0.79526 0.83470 1.90466 1.26647 1.51380 1.77573 1.93174 1.80732 1.42340 1.31643 1.93221 1.85921 1.39849 1.20935 1.21757 0.84699 0.77271 0.85930 1.90455 1.27914 1.53724 1.70250 1.23562 0.98949 0.98282 0.92065 1.34657 0.59267 0.91994 0.74808 0.86413 1.26501 0.98203 0.96586 1.00750 1.95082 1.34162 1.69636 1.63789 0.87815 0.72754 0.78344 0.80029 1.18643 1.21085 1.10725 1.22495 1.00427 1.01287 0.91753 1.22259 0.95418 1.03950 0.93241 1.21591 0.99332 0.97896 0.96682 1.21619 0.98229 0.98175 0.97922 1.21543 0.97728 1.00411 0.95848 1.22067 1.01387 0.95549 0.97151 0.91218 0.95649 0.89638 0.92139 0.89351 0.92105 0.89016 0.92123 0.87440 0.91673 0.86054 0.92073 0.91639 0.92637 0.92225 0.92129 0.92232 0.85684 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 66. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 7.60 60.06 0.46 0.67 16 2 N -0.51 -9.18 0.78 -242.12 -0.19 -9.37 16 3 C 0.01 0.15 6.12 -3.73 -0.02 0.13 16 4 C 0.47 11.58 7.63 36.42 0.28 11.86 16 5 O -0.56 -15.89 18.00 -18.33 -0.33 -16.22 16 6 O -0.55 -13.03 7.66 -47.48 -0.36 -13.39 16 7 O -0.46 -10.91 6.68 -47.47 -0.32 -11.23 16 8 C 0.46 11.16 6.82 36.42 0.25 11.41 16 9 O -0.53 -14.42 18.00 -18.34 -0.33 -14.75 16 10 C 0.00 0.01 6.10 -3.73 -0.02 -0.02 16 11 C 0.42 7.57 1.64 -26.73 -0.04 7.53 16 12 H 0.12 1.92 6.89 -51.93 -0.36 1.56 16 13 C -0.11 -1.99 2.65 37.16 0.10 -1.89 16 14 O -0.68 -14.60 14.68 -35.23 -0.52 -15.12 16 15 Si 0.97 18.38 23.17 -169.99 -3.94 14.44 16 16 H -0.26 -4.92 5.91 56.52 0.33 -4.58 16 17 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 18 H -0.17 -3.40 4.79 56.52 0.27 -3.13 16 19 C -0.14 -2.50 1.45 -90.62 -0.13 -2.63 16 20 C -0.11 -1.80 4.17 -26.73 -0.11 -1.91 16 21 C -0.12 -1.62 5.92 -26.72 -0.16 -1.78 16 22 C -0.12 -1.58 5.92 -26.73 -0.16 -1.74 16 23 C -0.12 -1.76 5.92 -26.73 -0.16 -1.92 16 24 C -0.13 -2.16 4.64 -26.73 -0.12 -2.29 16 25 H 0.07 0.95 6.40 -51.93 -0.33 0.62 16 26 H 0.02 0.31 8.11 -51.93 -0.42 -0.11 16 27 H 0.09 1.16 5.20 -51.93 -0.27 0.89 16 28 H 0.06 1.12 7.19 -51.93 -0.37 0.74 16 29 H 0.09 1.44 7.90 -51.93 -0.41 1.03 16 30 H 0.06 1.10 7.19 -51.92 -0.37 0.73 16 31 H 0.09 1.44 7.61 -51.93 -0.40 1.05 16 32 H 0.06 1.06 4.14 -51.93 -0.21 0.84 16 33 H 0.11 2.07 5.10 -51.93 -0.26 1.81 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.12 2.21 4.70 -51.93 -0.24 1.97 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.13 2.66 4.85 -51.98 -0.25 2.41 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 313.77 15.07 4.73 4.73 Total: -1.00 -31.95 313.77 -7.39 -39.34 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.28 Total: 4.15 kcal Atomic # 6 Polarization: 17.27 SS G_CDS: 0.15 Total: 17.42 kcal Atomic # 7 Polarization: -9.18 SS G_CDS: -0.19 Total: -9.37 kcal Atomic # 8 Polarization: -68.85 SS G_CDS: -1.86 Total: -70.71 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -3.94 Total: 14.44 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.95 -7.39 -39.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261508066.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.027 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.97 seconds