Wall clock time and date at job start Wed Mar 18 2020 00:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86302 * 109.47069 * 2 1 4 4 H 1.48496 * 109.46899 * 300.00008 * 3 2 1 5 5 H 1.48496 * 109.47479 * 59.99832 * 3 2 1 6 6 H 1.48496 * 109.47060 * 179.97438 * 3 2 1 7 7 C 1.50705 * 109.47128 * 119.99656 * 2 1 3 8 8 C 1.34174 * 125.43358 * 65.00144 * 7 2 1 9 9 C 1.47032 * 105.95378 * 179.97438 * 8 7 2 10 10 C 1.47351 * 127.18985 * 179.97438 * 9 8 7 11 11 O 1.21616 * 120.00341 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99678 * 179.72486 * 10 9 8 13 13 C 1.39893 * 119.99913 * 174.86331 * 12 10 9 14 14 C 1.38969 * 120.08647 * 146.94775 * 13 12 10 15 15 C 1.38258 * 120.48598 * 180.02562 * 14 13 12 16 16 C 1.38104 * 120.14888 * 359.94846 * 15 14 13 17 17 C 1.50449 * 120.25937 * 179.74493 * 16 15 14 18 18 C 1.52590 * 111.18140 * 157.00695 * 17 16 15 19 19 O 1.43314 * 110.33145 * 55.87116 * 18 17 16 20 Xx 1.43359 * 111.34835 * 294.33878 * 19 18 17 21 20 O 1.41993 * 122.03517 * 221.26804 * 20 19 18 22 21 C 1.39537 * 119.44990 * 359.92531 * 16 15 14 23 22 C 1.38725 * 120.65972 * 359.91243 * 22 16 15 24 23 C 1.36437 * 105.61172 * 0.26393 * 9 8 7 25 24 O 1.33655 * 108.39087 * 359.57264 * 24 9 8 26 25 H 0.96692 * 114.00136 * 59.99941 * 1 2 3 27 26 H 1.08996 * 109.47496 * 239.99576 * 2 1 3 28 27 H 1.08001 * 127.02655 * 0.02562 * 8 7 2 29 28 H 0.97002 * 119.99854 * 354.87023 * 12 10 9 30 29 H 1.07996 * 119.75920 * 0.08792 * 14 13 12 31 30 H 1.07993 * 119.93028 * 179.97438 * 15 14 13 32 31 H 1.09001 * 109.13749 * 277.44422 * 17 16 15 33 32 H 1.08997 * 109.13847 * 36.62863 * 17 16 15 34 33 H 1.08998 * 109.32915 * 176.13604 * 18 17 16 35 34 H 1.09002 * 109.32508 * 295.60883 * 18 17 16 36 35 H 0.96702 * 114.00209 * 0.02562 * 21 20 19 37 36 H 1.08000 * 120.28441 * 180.09527 * 23 22 16 38 37 H 1.07998 * 125.79740 * 179.74067 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 1.5550 2.4564 -1.2125 5 1 1.5550 2.4566 1.2124 6 1 3.5350 1.7565 0.0006 7 6 1.9314 -0.7104 1.2305 8 6 1.7551 -2.0121 1.5037 9 6 2.4130 -2.2462 2.7976 10 6 2.5006 -3.5190 3.5349 11 8 1.9930 -4.5241 3.0755 12 7 3.1485 -3.5705 4.7157 13 6 3.1403 -4.7505 5.4671 14 6 4.2430 -5.0913 6.2411 15 6 4.2440 -6.2557 6.9865 16 6 3.1449 -7.0917 6.9685 17 6 3.1455 -8.3623 7.7741 18 6 1.7229 -8.8263 8.0731 19 8 0.9829 -8.9793 6.8554 20 8 -0.4400 -7.3663 5.5887 21 6 2.0356 -6.7500 6.1940 22 6 2.0275 -5.5812 5.4467 23 6 2.9198 -1.0373 3.1759 24 8 2.6269 -0.1419 2.2278 25 1 -0.3933 0.4417 -0.7650 26 1 1.7924 -0.5139 -0.8899 27 1 1.2366 -2.7396 0.8968 28 1 3.6203 -2.7894 5.0445 29 1 5.1052 -4.4412 6.2613 30 1 5.1060 -6.5120 7.5845 31 1 3.6648 -9.1401 7.2143 32 1 3.6689 -8.1890 8.7144 33 1 1.7576 -9.7816 8.5967 34 1 1.2284 -8.0890 8.7055 35 1 -1.1235 -8.0466 5.6606 36 1 1.1651 -5.3219 4.8506 37 1 3.4671 -0.8384 4.0854 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001642023191.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 18 2020 00:47:26 Heat of formation + Delta-G solvation = 95.656709 kcal Electronic energy + Delta-G solvation = -23831.141668 eV Core-core repulsion = 19937.211224 eV Total energy + Delta-G solvation = -3893.930445 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.103 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -43.89302 -41.88461 -40.02380 -38.06634 -37.04300 -35.57758 -34.19232 -32.79024 -32.49155 -32.01769 -31.84179 -29.03603 -26.83290 -25.65124 -24.16039 -23.79524 -22.36232 -21.87861 -21.09991 -19.41834 -18.86274 -18.34886 -17.74418 -17.31954 -17.17553 -16.76770 -16.36000 -16.10114 -16.06367 -15.92193 -15.33453 -15.12498 -14.98964 -14.78857 -14.63123 -14.43143 -14.24461 -14.13637 -13.88430 -13.38739 -13.04912 -12.91204 -12.83353 -12.30959 -12.13405 -11.79261 -11.35262 -11.03025 -10.94439 -10.65221 -10.56286 -10.42187 -9.94875 -9.59445 -9.32577 -6.08913 -2.60842 -0.49906 -0.26475 0.06885 0.73146 0.90200 1.19125 1.41226 1.49072 1.55735 1.81761 1.89799 2.22603 3.04116 3.20563 3.21365 3.29026 3.44247 3.50733 3.53479 3.67257 3.72246 4.03828 4.09656 4.13874 4.23438 4.32544 4.39398 4.46483 4.55441 4.60298 4.67918 4.75056 4.80068 4.96599 4.99732 5.10366 5.26999 5.55090 5.69651 5.90365 6.33450 6.73896 6.86836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.046 4.046 3 Si 0.955 3.045 4 H -0.246 1.246 5 H -0.245 1.245 6 H -0.246 1.246 7 C -0.010 4.010 8 C -0.115 4.115 9 C -0.241 4.241 10 C 0.590 3.410 11 O -0.497 6.497 12 N -0.667 5.667 13 C 0.186 3.814 14 C -0.138 4.138 15 C -0.059 4.059 16 C -0.099 4.099 17 C -0.104 4.104 18 C 0.043 3.957 19 O -0.418 6.418 20 O -0.601 6.601 21 C 0.247 3.753 22 C -0.117 4.117 23 C 0.042 3.958 24 O -0.167 6.167 25 H 0.390 0.610 26 H 0.099 0.901 27 H 0.166 0.834 28 H 0.417 0.583 29 H 0.154 0.846 30 H 0.165 0.835 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.060 0.940 35 H 0.343 0.657 36 H 0.176 0.824 37 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.347 7.184 1.800 11.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.155 4.155 3 Si 0.775 3.225 4 H -0.170 1.170 5 H -0.167 1.167 6 H -0.169 1.169 7 C -0.058 4.058 8 C -0.134 4.134 9 C -0.246 4.246 10 C 0.379 3.621 11 O -0.370 6.370 12 N -0.314 5.314 13 C 0.091 3.909 14 C -0.158 4.158 15 C -0.078 4.078 16 C -0.101 4.101 17 C -0.141 4.141 18 C -0.040 4.040 19 O -0.357 6.357 20 O -0.430 6.430 21 C 0.232 3.768 22 C -0.137 4.137 23 C -0.029 4.029 24 O -0.062 6.062 25 H 0.239 0.761 26 H 0.117 0.883 27 H 0.184 0.816 28 H 0.255 0.745 29 H 0.172 0.828 30 H 0.182 0.818 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.133 0.867 34 H 0.078 0.922 35 H 0.179 0.821 36 H 0.193 0.807 37 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 8.758 7.797 1.679 11.846 hybrid contribution -0.992 -0.846 -0.134 1.311 sum 7.767 6.951 1.546 10.537 Atomic orbital electron populations 1.86482 1.16220 1.81979 1.50226 1.23856 0.86301 1.12006 0.93350 0.85540 0.80990 0.73862 0.82139 1.16950 1.16746 1.16936 1.21198 1.00799 0.92160 0.91630 1.22495 1.00433 0.95523 0.94981 1.21226 1.10315 0.93470 0.99589 1.17428 0.77516 0.87753 0.79366 1.90916 1.44387 1.35076 1.66650 1.43316 1.54672 1.13322 1.20117 1.17139 0.90807 0.88273 0.94731 1.21236 0.97272 0.98431 0.98866 1.20771 0.95809 0.91813 0.99360 1.20248 0.89822 0.99913 1.00100 1.21503 1.00190 0.92732 0.99668 1.22515 0.90683 0.98635 0.92174 1.95045 1.71607 1.34982 1.34101 1.93522 1.31424 1.38018 1.80060 1.29616 0.69544 0.80488 0.97187 1.21153 0.99750 0.91767 1.01027 1.24469 0.99148 0.86525 0.92782 1.83677 1.57338 1.39017 1.26211 0.76053 0.88335 0.81611 0.74476 0.82820 0.81810 0.88771 0.88721 0.86666 0.92211 0.82148 0.80660 0.76650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.53 12.86 -35.23 -0.45 0.08 16 2 C -0.05 0.08 2.96 36.01 0.11 0.18 16 3 Si 0.96 -1.82 27.38 -169.99 -4.65 -6.47 16 4 H -0.25 0.54 7.11 56.52 0.40 0.94 16 5 H -0.24 -0.03 7.11 56.52 0.40 0.37 16 6 H -0.25 0.25 7.11 56.52 0.40 0.66 16 7 C -0.01 0.00 6.22 -35.74 -0.22 -0.23 16 8 C -0.11 -0.17 10.90 -37.45 -0.41 -0.58 16 9 C -0.24 -0.04 6.31 -103.28 -0.65 -0.69 16 10 C 0.59 0.80 7.55 -12.55 -0.09 0.70 16 11 O -0.50 -2.93 14.68 5.26 0.08 -2.85 16 12 N -0.67 1.56 5.33 -10.83 -0.06 1.51 16 13 C 0.19 -0.14 6.28 -83.67 -0.53 -0.67 16 14 C -0.14 0.52 9.94 -39.30 -0.39 0.13 16 15 C -0.06 0.21 9.72 -39.62 -0.39 -0.18 16 16 C -0.10 0.00 5.79 -104.31 -0.60 -0.60 16 17 C -0.10 0.09 5.95 -28.21 -0.17 -0.07 16 18 C 0.04 0.10 7.08 36.95 0.26 0.36 16 19 O -0.42 -3.42 14.34 -57.22 -0.82 -4.24 16 20 O -0.60 -6.42 17.84 -57.22 -1.02 -7.44 16 21 C 0.25 0.96 9.43 -38.92 -0.37 0.59 16 22 C -0.12 -0.36 8.47 -39.17 -0.33 -0.69 16 23 C 0.04 -0.12 11.61 30.08 0.35 0.23 16 24 O -0.17 0.07 8.90 7.65 0.07 0.14 16 25 H 0.39 -2.25 8.74 45.56 0.40 -1.85 16 26 H 0.10 -0.40 7.96 -51.93 -0.41 -0.81 16 27 H 0.17 0.27 8.06 -52.49 -0.42 -0.15 16 28 H 0.42 -2.83 7.81 -40.82 -0.32 -3.14 16 29 H 0.15 -1.11 8.06 -52.49 -0.42 -1.53 16 30 H 0.16 -1.12 8.06 -52.49 -0.42 -1.54 16 31 H 0.09 -0.10 8.14 -51.93 -0.42 -0.53 16 32 H 0.09 -0.39 8.12 -51.93 -0.42 -0.81 16 33 H 0.12 0.01 8.14 -51.93 -0.42 -0.42 16 34 H 0.06 0.11 8.14 -51.93 -0.42 -0.31 16 35 H 0.34 2.79 9.26 45.56 0.42 3.21 16 36 H 0.18 1.01 6.39 -52.49 -0.34 0.68 16 37 H 0.22 -1.76 7.49 -52.49 -0.39 -2.16 16 LS Contribution 335.22 15.07 5.05 5.05 Total: 0.00 -15.50 335.22 -7.63 -23.14 By element: Atomic # 1 Polarization: -5.00 SS G_CDS: -2.39 Total: -7.39 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -3.43 Total: -1.51 kcal Atomic # 7 Polarization: 1.56 SS G_CDS: -0.06 Total: 1.51 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -2.15 Total: -14.32 kcal Atomic # 14 Polarization: -1.82 SS G_CDS: -4.65 Total: -6.47 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -15.50 -7.63 -23.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642023191.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.792 kcal (2) G-P(sol) polarization free energy of solvation -15.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds