Wall clock time and date at job start Wed Mar 18 2020 00:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86302 * 109.47069 * 2 1 4 4 H 1.48496 * 109.46899 * 300.00008 * 3 2 1 5 5 H 1.48496 * 109.47479 * 59.99832 * 3 2 1 6 6 H 1.48496 * 109.47060 * 179.97438 * 3 2 1 7 7 C 1.50705 * 109.47128 * 119.99656 * 2 1 3 8 8 C 1.34174 * 125.43358 * 65.00144 * 7 2 1 9 9 C 1.47032 * 105.95378 * 179.97438 * 8 7 2 10 10 C 1.47351 * 127.18985 * 179.97438 * 9 8 7 11 11 O 1.21616 * 120.00341 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99678 * 179.72486 * 10 9 8 13 13 C 1.39893 * 119.99913 * 174.86331 * 12 10 9 14 14 C 1.38969 * 120.08647 * 146.94775 * 13 12 10 15 15 C 1.38258 * 120.48598 * 180.02562 * 14 13 12 16 16 C 1.38104 * 120.14888 * 359.94846 * 15 14 13 17 17 C 1.50449 * 120.25937 * 179.74493 * 16 15 14 18 18 C 1.52590 * 111.18140 * 157.00695 * 17 16 15 19 19 O 1.43314 * 110.33145 * 55.87116 * 18 17 16 20 Xx 1.43359 * 111.34835 * 294.33878 * 19 18 17 21 20 O 1.41993 * 122.03517 * 221.26804 * 20 19 18 22 21 C 1.39537 * 119.44990 * 359.92531 * 16 15 14 23 22 C 1.38725 * 120.65972 * 359.91243 * 22 16 15 24 23 C 1.36437 * 105.61172 * 0.26393 * 9 8 7 25 24 O 1.33655 * 108.39087 * 359.57264 * 24 9 8 26 25 H 0.96692 * 114.00136 * 59.99941 * 1 2 3 27 26 H 1.08996 * 109.47496 * 239.99576 * 2 1 3 28 27 H 1.08001 * 127.02655 * 0.02562 * 8 7 2 29 28 H 0.97002 * 119.99854 * 354.87023 * 12 10 9 30 29 H 1.07996 * 119.75920 * 0.08792 * 14 13 12 31 30 H 1.07993 * 119.93028 * 179.97438 * 15 14 13 32 31 H 1.09001 * 109.13749 * 277.44422 * 17 16 15 33 32 H 1.08997 * 109.13847 * 36.62863 * 17 16 15 34 33 H 1.08998 * 109.32915 * 176.13604 * 18 17 16 35 34 H 1.09002 * 109.32508 * 295.60883 * 18 17 16 36 35 H 0.96702 * 114.00209 * 0.02562 * 21 20 19 37 36 H 1.08000 * 120.28441 * 180.09527 * 23 22 16 38 37 H 1.07998 * 125.79740 * 179.74067 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 1.5550 2.4564 -1.2125 5 1 1.5550 2.4566 1.2124 6 1 3.5350 1.7565 0.0006 7 6 1.9314 -0.7104 1.2305 8 6 1.7551 -2.0121 1.5037 9 6 2.4130 -2.2462 2.7976 10 6 2.5006 -3.5190 3.5349 11 8 1.9930 -4.5241 3.0755 12 7 3.1485 -3.5705 4.7157 13 6 3.1403 -4.7505 5.4671 14 6 4.2430 -5.0913 6.2411 15 6 4.2440 -6.2557 6.9865 16 6 3.1449 -7.0917 6.9685 17 6 3.1455 -8.3623 7.7741 18 6 1.7229 -8.8263 8.0731 19 8 0.9829 -8.9793 6.8554 20 8 -0.4400 -7.3663 5.5887 21 6 2.0356 -6.7500 6.1940 22 6 2.0275 -5.5812 5.4467 23 6 2.9198 -1.0373 3.1759 24 8 2.6269 -0.1419 2.2278 25 1 -0.3933 0.4417 -0.7650 26 1 1.7924 -0.5139 -0.8899 27 1 1.2366 -2.7396 0.8968 28 1 3.6203 -2.7894 5.0445 29 1 5.1052 -4.4412 6.2613 30 1 5.1060 -6.5120 7.5845 31 1 3.6648 -9.1401 7.2143 32 1 3.6689 -8.1890 8.7144 33 1 1.7576 -9.7816 8.5967 34 1 1.2284 -8.0890 8.7055 35 1 -1.1235 -8.0466 5.6606 36 1 1.1651 -5.3219 4.8506 37 1 3.4671 -0.8384 4.0854 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001642023191.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 18 2020 00:47:22 Heat of formation + Delta-G solvation = 85.308364 kcal Electronic energy + Delta-G solvation = -23831.590406 eV Core-core repulsion = 19937.211224 eV Total energy + Delta-G solvation = -3894.379182 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.103 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -43.84754 -42.00775 -40.19891 -37.94224 -37.26377 -35.85772 -34.22974 -32.96374 -32.39798 -32.12654 -31.86961 -29.20260 -26.75896 -25.70952 -24.32122 -23.87691 -22.37460 -21.93644 -21.12509 -19.34955 -18.74656 -18.30777 -17.83180 -17.31329 -17.22391 -16.84852 -16.30984 -16.24370 -16.05153 -15.93698 -15.36516 -15.22354 -15.06494 -14.69855 -14.66197 -14.60693 -14.32480 -14.26648 -13.82544 -13.45629 -13.14105 -13.00005 -12.74675 -12.15703 -12.05455 -11.92527 -11.53060 -11.07614 -10.90886 -10.79145 -10.65702 -10.50611 -9.90406 -9.77650 -9.59728 -6.57397 -2.77569 -0.62285 -0.43169 0.14717 0.70125 1.04849 1.34308 1.49840 1.55088 1.69916 1.84147 1.94289 2.15779 2.87242 3.06889 3.24269 3.33925 3.42157 3.53000 3.65764 3.71087 3.82993 3.99335 4.10569 4.20773 4.29684 4.37772 4.41219 4.43656 4.48522 4.62395 4.68467 4.80501 4.84939 4.88791 4.95721 5.03695 5.25713 5.29651 5.74804 6.04350 6.71054 6.74133 6.74724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.054 4.054 3 Si 1.000 3.000 4 H -0.240 1.240 5 H -0.275 1.275 6 H -0.254 1.254 7 C -0.017 4.017 8 C -0.148 4.148 9 C -0.274 4.274 10 C 0.589 3.411 11 O -0.558 6.558 12 N -0.643 5.643 13 C 0.190 3.810 14 C -0.095 4.095 15 C -0.023 4.023 16 C -0.088 4.088 17 C -0.108 4.108 18 C 0.017 3.983 19 O -0.445 6.445 20 O -0.847 6.847 21 C 0.259 3.741 22 C -0.152 4.152 23 C 0.082 3.918 24 O -0.172 6.172 25 H 0.408 0.592 26 H 0.119 0.881 27 H 0.145 0.855 28 H 0.445 0.555 29 H 0.221 0.779 30 H 0.237 0.763 31 H 0.109 0.891 32 H 0.157 0.843 33 H 0.170 0.830 34 H 0.088 0.912 35 H 0.306 0.694 36 H 0.136 0.864 37 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.586 9.463 5.645 19.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.162 4.162 3 Si 0.821 3.179 4 H -0.163 1.163 5 H -0.199 1.199 6 H -0.178 1.178 7 C -0.065 4.065 8 C -0.168 4.168 9 C -0.279 4.279 10 C 0.380 3.620 11 O -0.436 6.436 12 N -0.292 5.292 13 C 0.094 3.906 14 C -0.114 4.114 15 C -0.040 4.040 16 C -0.089 4.089 17 C -0.144 4.144 18 C -0.065 4.065 19 O -0.389 6.389 20 O -0.672 6.672 21 C 0.249 3.751 22 C -0.172 4.172 23 C 0.012 3.988 24 O -0.067 6.067 25 H 0.261 0.739 26 H 0.137 0.863 27 H 0.163 0.837 28 H 0.289 0.711 29 H 0.238 0.762 30 H 0.253 0.747 31 H 0.127 0.873 32 H 0.174 0.826 33 H 0.185 0.815 34 H 0.105 0.895 35 H 0.137 0.863 36 H 0.153 0.847 37 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 17.061 10.203 5.487 20.623 hybrid contribution -2.704 -1.494 -0.879 3.212 sum 14.357 8.709 4.608 17.413 Atomic orbital electron populations 1.86438 1.16860 1.82589 1.51731 1.24129 0.86001 1.12775 0.93319 0.84922 0.79779 0.72450 0.80739 1.16315 1.19934 1.17771 1.21498 1.00761 0.91837 0.92401 1.22553 1.01754 0.96150 0.96374 1.21161 1.12698 0.94283 0.99722 1.17716 0.76714 0.87397 0.80151 1.90927 1.46948 1.37266 1.68464 1.43071 1.53694 1.13944 1.18462 1.17406 0.89641 0.88053 0.95488 1.22060 0.96567 0.98333 0.94423 1.21749 0.94488 0.89715 0.98085 1.20993 0.87433 1.01602 0.98898 1.21613 0.98304 0.91975 1.02509 1.23392 0.92740 0.99363 0.90966 1.95172 1.74819 1.29809 1.39108 1.93504 1.41424 1.44883 1.87438 1.29341 0.63005 0.79404 1.03364 1.21277 1.00744 0.93153 1.02027 1.25537 0.96056 0.84410 0.92816 1.83719 1.57139 1.39416 1.26429 0.73919 0.86338 0.83672 0.71115 0.76242 0.74679 0.87321 0.82562 0.81492 0.89491 0.86328 0.84696 0.70654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 0.16 12.86 -148.98 -1.92 -1.76 16 2 C -0.05 0.13 2.96 71.24 0.21 0.34 16 3 Si 1.00 -3.98 27.38 68.60 1.88 -2.10 16 4 H -0.24 1.25 7.11 99.48 0.71 1.96 16 5 H -0.27 -0.22 7.11 99.48 0.71 0.49 16 6 H -0.25 0.74 7.11 99.48 0.71 1.45 16 7 C -0.02 -0.04 6.22 24.76 0.15 0.12 16 8 C -0.15 -0.88 10.90 23.65 0.26 -0.62 16 9 C -0.27 -0.33 6.31 -18.99 -0.12 -0.45 16 10 C 0.59 2.53 7.55 86.64 0.65 3.18 16 11 O -0.56 -9.52 14.68 -4.08 -0.06 -9.58 16 12 N -0.64 4.46 5.33 -306.42 -1.63 2.82 16 13 C 0.19 -0.77 6.28 38.18 0.24 -0.53 16 14 C -0.09 1.50 9.94 22.45 0.22 1.72 16 15 C -0.02 0.37 9.72 22.24 0.22 0.59 16 16 C -0.09 0.39 5.79 -19.66 -0.11 0.27 16 17 C -0.11 0.82 5.95 29.63 0.18 0.99 16 18 C 0.02 0.05 7.08 71.85 0.51 0.56 16 19 O -0.44 -9.47 14.34 -127.95 -1.83 -11.30 16 20 O -0.85 -33.00 17.84 -127.95 -2.28 -35.28 16 21 C 0.26 2.68 9.43 22.70 0.21 2.89 16 22 C -0.15 -1.45 8.47 22.54 0.19 -1.26 16 23 C 0.08 -0.64 11.61 67.40 0.78 0.14 16 24 O -0.17 0.31 8.90 4.44 0.04 0.35 16 25 H 0.41 -4.22 8.74 -74.06 -0.65 -4.87 16 26 H 0.12 -0.86 7.96 -2.39 -0.02 -0.88 16 27 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 28 H 0.45 -8.40 7.81 -92.71 -0.72 -9.12 16 29 H 0.22 -5.88 8.06 -2.91 -0.02 -5.90 16 30 H 0.24 -6.46 8.06 -2.91 -0.02 -6.49 16 31 H 0.11 -0.90 8.14 -2.39 -0.02 -0.92 16 32 H 0.16 -2.87 8.12 -2.39 -0.02 -2.88 16 33 H 0.17 -0.63 8.14 -2.39 -0.02 -0.65 16 34 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.31 11.22 9.26 -74.06 -0.69 10.54 16 36 H 0.14 2.80 6.39 -2.91 -0.02 2.78 16 37 H 0.28 -6.12 7.49 -2.91 -0.02 -6.14 16 Total: 0.00 -65.73 335.22 -2.36 -68.09 By element: Atomic # 1 Polarization: -19.04 SS G_CDS: -0.14 Total: -19.19 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 3.59 Total: 7.96 kcal Atomic # 7 Polarization: 4.46 SS G_CDS: -1.63 Total: 2.82 kcal Atomic # 8 Polarization: -51.53 SS G_CDS: -6.05 Total: -57.58 kcal Atomic # 14 Polarization: -3.98 SS G_CDS: 1.88 Total: -2.10 kcal Total: -65.73 -2.36 -68.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642023191.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.394 kcal (2) G-P(sol) polarization free energy of solvation -65.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds