Wall clock time and date at job start Tue Mar 17 2020 23:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37989 * 124.79102 * 2 1 4 4 C 1.39058 * 133.22072 * 359.97438 * 3 2 1 5 5 C 1.37826 * 119.93319 * 180.02562 * 4 3 2 6 6 C 1.38700 * 120.63113 * 0.02562 * 5 4 3 7 7 C 1.37801 * 120.30750 * 359.97438 * 6 5 4 8 8 C 1.39247 * 119.66191 * 359.97438 * 7 6 5 9 9 C 1.47333 * 134.02338 * 179.97438 * 8 7 6 10 Xx 1.57000 * 126.75606 * 0.02562 * 9 8 7 11 10 O 1.43472 * 127.55498 * 179.70815 * 10 9 8 12 11 C 1.43956 * 104.84484 * 219.55319 * 11 10 9 13 12 C 1.52999 * 110.53129 * 217.70270 * 12 11 10 14 13 C 1.53005 * 110.21549 * 95.34117 * 12 11 10 15 14 C 1.54232 * 104.74052 * 336.60233 * 12 11 10 16 15 C 1.52998 * 110.39005 * 241.00863 * 15 12 11 17 16 C 1.53005 * 110.48697 * 118.66980 * 15 12 11 18 17 O 1.43469 * 127.55477 * 0.02562 * 10 9 8 19 18 C 1.35338 * 124.79430 * 180.02562 * 2 1 3 20 19 C 1.50699 * 125.09683 * 359.97438 * 19 2 1 21 20 O 1.42904 * 109.46850 * 49.74616 * 20 19 2 22 21 Si 1.86293 * 109.47244 * 289.74450 * 20 19 2 23 22 H 1.48503 * 109.47092 * 66.38919 * 22 20 19 24 23 H 1.48501 * 109.47440 * 186.38661 * 22 20 19 25 24 H 1.48501 * 109.47242 * 306.38819 * 22 20 19 26 25 H 1.08997 * 109.47068 * 84.87253 * 1 2 3 27 26 H 1.09001 * 109.46826 * 204.87296 * 1 2 3 28 27 H 1.08996 * 109.47115 * 324.86663 * 1 2 3 29 28 H 1.07996 * 120.03584 * 0.04392 * 4 3 2 30 29 H 1.07997 * 119.68660 * 180.02562 * 5 4 3 31 30 H 1.08001 * 119.84579 * 180.26544 * 6 5 4 32 31 H 1.07999 * 120.17019 * 180.02562 * 7 6 5 33 32 H 1.08997 * 109.46994 * 175.40675 * 13 12 11 34 33 H 1.09001 * 109.47531 * 295.41175 * 13 12 11 35 34 H 1.09006 * 109.46611 * 55.40573 * 13 12 11 36 35 H 1.08998 * 109.47057 * 304.77781 * 14 12 11 37 36 H 1.09002 * 109.46703 * 64.77627 * 14 12 11 38 37 H 1.09003 * 109.46984 * 184.77477 * 14 12 11 39 38 H 1.09004 * 109.46608 * 176.73287 * 16 15 12 40 39 H 1.09003 * 109.47098 * 296.72953 * 16 15 12 41 40 H 1.08998 * 109.47202 * 56.73686 * 16 15 12 42 41 H 1.09005 * 109.46905 * 303.20857 * 17 15 12 43 42 H 1.08990 * 109.46955 * 63.20992 * 17 15 12 44 43 H 1.09001 * 109.46486 * 183.21258 * 17 15 12 45 44 H 1.09003 * 109.47084 * 169.74322 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2524 1.1332 0.0000 4 6 1.9636 2.4935 -0.0005 5 6 2.9891 3.4143 -0.0008 6 6 4.3122 2.9984 -0.0013 7 6 4.6190 1.6550 -0.0009 8 6 3.5927 0.7139 0.0006 9 6 3.5541 -0.7590 0.0009 10 8 4.7693 -3.1657 0.0063 11 6 5.8411 -3.5439 0.8898 12 6 6.5578 -4.7883 0.3619 13 6 5.3008 -3.7959 2.2989 14 6 6.7961 -2.3328 0.8891 15 6 8.1730 -2.7400 0.3607 16 6 6.9186 -1.7466 2.2971 17 8 6.1778 -1.3795 -0.0005 18 6 2.2373 -1.1114 -0.0005 19 6 1.7192 -2.5265 -0.0006 20 8 0.7375 -2.6743 -1.0285 21 14 0.9491 -2.9060 1.6527 22 1 -0.2670 -2.0735 1.8352 23 1 0.5781 -4.3429 1.7080 24 1 1.9223 -2.6042 2.7331 25 1 -0.3633 0.0918 -1.0235 26 1 -0.3633 -0.9324 0.4323 27 1 -0.3633 0.8404 0.5914 28 1 0.9367 2.8281 -0.0002 29 1 2.7602 4.4697 -0.0008 30 1 5.1059 3.7309 0.0027 31 1 5.6500 1.3337 -0.0008 32 1 7.4145 -5.0113 0.9979 33 1 5.8702 -5.6341 0.3688 34 1 6.8993 -4.6060 -0.6571 35 1 4.7579 -2.9155 2.6427 36 1 4.6285 -4.6538 2.2821 37 1 6.1310 -3.9981 2.9756 38 1 8.8176 -1.8623 0.3120 39 1 8.6149 -3.4787 1.0295 40 1 8.0675 -3.1690 -0.6357 41 1 5.9290 -1.4756 2.6651 42 1 7.3631 -2.4874 2.9616 43 1 7.5508 -0.8592 2.2673 44 1 2.5439 -3.2154 -0.1840 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390772661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 23:22:14 Heat of formation + Delta-G solvation = 137.547097 kcal Electronic energy + Delta-G solvation = -26316.624186 eV Core-core repulsion = 22709.832173 eV Total energy + Delta-G solvation = -3606.792013 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 12.69 seconds Orbital eigenvalues (eV) -40.63261 -37.28810 -36.72229 -32.96778 -31.92543 -31.83195 -29.73563 -29.66325 -28.43707 -28.26553 -27.70139 -25.51329 -24.81043 -23.83418 -21.28974 -21.17351 -20.31756 -18.62280 -16.77300 -15.95834 -15.66559 -15.08684 -14.82504 -14.78284 -14.44467 -14.19639 -13.60527 -13.43562 -13.34801 -13.03201 -12.51617 -12.41729 -12.24030 -12.22216 -12.13826 -11.79573 -11.71170 -11.49027 -11.28233 -11.26806 -11.12731 -10.75731 -10.68891 -10.53353 -10.47704 -10.33558 -10.22747 -10.02642 -9.97712 -8.85487 -8.15845 -7.86131 -7.66273 -7.61531 -6.74618 -6.52356 -6.11770 -3.86253 -0.36107 1.67917 2.11805 2.57165 2.72565 2.90103 3.21822 3.49888 3.81875 4.52044 5.14441 5.28529 5.46353 5.50273 5.56935 5.66588 5.68375 5.78039 5.83699 5.94780 5.95856 5.99446 6.03101 6.14465 6.16355 6.21538 6.24197 6.36068 6.37067 6.39174 6.42707 6.52567 6.61087 6.65487 6.66485 6.70529 6.81480 6.94627 6.96045 7.09387 7.17055 7.30484 7.42320 7.43814 7.71080 7.88288 7.99358 8.02857 8.56689 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.011843 B = 0.007095 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.707311 B = 3945.558938 C = 5664.394641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.470 5.470 3 C 0.098 3.902 4 C -0.143 4.143 5 C -0.090 4.090 6 C -0.182 4.182 7 C -0.015 4.015 8 C -0.138 4.138 9 C 0.020 3.980 10 O -0.482 6.482 11 C 0.118 3.882 12 C -0.130 4.130 13 C -0.156 4.156 14 C 0.114 3.886 15 C -0.129 4.129 16 C -0.151 4.151 17 O -0.467 6.467 18 C 0.020 3.980 19 C -0.023 4.023 20 O -0.599 6.599 21 Si 1.027 2.973 22 H -0.262 1.262 23 H -0.251 1.251 24 H -0.250 1.250 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.133 0.867 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.043 0.957 43 H 0.044 0.956 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.742 3.482 6.675 7.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.163 5.163 3 C -0.007 4.007 4 C -0.164 4.164 5 C -0.109 4.109 6 C -0.202 4.202 7 C -0.034 4.034 8 C -0.144 4.144 9 C 0.001 3.999 10 O -0.415 6.415 11 C 0.060 3.940 12 C -0.188 4.188 13 C -0.214 4.214 14 C 0.057 3.943 15 C -0.187 4.187 16 C -0.209 4.209 17 O -0.400 6.400 18 C -0.086 4.086 19 C -0.128 4.128 20 O -0.540 6.540 21 Si 0.836 3.164 22 H -0.187 1.187 23 H -0.174 1.174 24 H -0.175 1.175 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.085 0.915 28 H 0.131 0.869 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.151 0.849 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.391 3.387 6.728 7.543 hybrid contribution -0.100 0.407 -0.408 0.585 sum -0.491 3.795 6.320 7.388 Atomic orbital electron populations 1.22039 0.78225 1.03292 1.02833 1.44178 1.05675 1.03872 1.62558 1.18473 0.90971 0.88216 1.03054 1.19881 0.99076 0.89118 1.08342 1.20720 0.92478 0.98172 0.99545 1.20850 0.96038 0.95493 1.07788 1.20763 0.99210 0.91162 0.92241 1.20014 0.91152 0.94261 1.08987 1.40513 0.92712 0.87034 0.79596 1.95059 1.45338 1.38304 1.62810 1.22165 0.92236 0.88171 0.91384 1.22190 0.99154 0.96230 1.01181 1.22428 0.99937 1.01126 0.97905 1.22269 0.88748 0.91862 0.91437 1.22176 0.95219 1.00165 1.01127 1.22345 1.01430 0.99381 0.97710 1.95155 1.35054 1.47210 1.62571 1.22488 0.89925 0.90434 1.05794 1.24927 0.97105 0.91406 0.99353 1.94910 1.40500 1.93803 1.24799 0.85866 0.78842 0.80292 0.71442 1.18723 1.17434 1.17481 0.91348 0.89518 0.91521 0.86898 0.86354 0.86434 0.84914 0.93154 0.93071 0.92202 0.92216 0.93585 0.93667 0.93223 0.93146 0.92190 0.92228 0.93848 0.93695 0.83253 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 296. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.42 9.97 59.85 0.60 2.02 16 2 N -0.47 -10.43 3.12 -117.03 -0.37 -10.79 16 3 C 0.10 2.09 6.79 -83.96 -0.57 1.52 16 4 C -0.14 -2.49 9.97 -39.43 -0.39 -2.89 16 5 C -0.09 -1.41 10.01 -39.56 -0.40 -1.80 16 6 C -0.18 -3.05 10.03 -39.57 -0.40 -3.45 16 7 C -0.02 -0.31 10.09 -39.37 -0.40 -0.71 16 8 C -0.14 -3.24 6.39 -105.00 -0.67 -3.91 16 9 C 0.02 0.54 11.38 -36.58 -0.42 0.12 16 10 O -0.48 -13.06 12.23 -59.50 -0.73 -13.79 16 11 C 0.12 2.59 1.56 -89.97 -0.14 2.45 16 12 C -0.13 -2.40 7.79 37.16 0.29 -2.11 16 13 C -0.16 -3.01 7.78 37.16 0.29 -2.73 16 14 C 0.11 2.49 1.57 -89.97 -0.14 2.35 16 15 C -0.13 -2.36 7.78 37.16 0.29 -2.07 16 16 C -0.15 -2.88 7.79 37.16 0.29 -2.59 16 17 O -0.47 -12.56 14.24 -59.50 -0.85 -13.41 16 18 C 0.02 0.49 5.08 -81.74 -0.42 0.07 16 19 C -0.02 -0.56 2.89 36.01 0.10 -0.45 16 20 O -0.60 -16.34 16.85 -35.23 -0.59 -16.93 16 21 Si 1.03 19.86 26.93 -169.99 -4.58 15.28 16 22 H -0.26 -4.63 5.86 56.52 0.33 -4.30 16 23 H -0.25 -4.50 7.11 56.52 0.40 -4.10 16 24 H -0.25 -4.68 7.11 56.52 0.40 -4.28 16 25 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 26 H 0.09 1.63 4.20 -51.93 -0.22 1.41 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 31 H 0.13 2.75 8.06 -52.49 -0.42 2.33 16 32 H 0.05 0.77 6.90 -51.93 -0.36 0.41 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.14 6.72 -51.93 -0.35 0.79 16 35 H 0.06 1.22 6.73 -51.93 -0.35 0.88 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.04 0.73 6.90 -51.93 -0.36 0.37 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.05 0.77 7.00 -51.93 -0.36 0.40 16 40 H 0.06 1.12 6.60 -51.93 -0.34 0.78 16 41 H 0.06 1.21 6.62 -51.93 -0.34 0.87 16 42 H 0.04 0.70 7.01 -51.93 -0.36 0.33 16 43 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.15 3.94 5.84 -51.93 -0.30 3.64 16 LS Contribution 355.92 15.07 5.36 5.36 Total: -1.00 -32.14 355.92 -10.27 -42.42 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -6.44 Total: 6.03 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -2.08 Total: -14.17 kcal Atomic # 7 Polarization: -10.43 SS G_CDS: -0.37 Total: -10.79 kcal Atomic # 8 Polarization: -41.96 SS G_CDS: -2.17 Total: -44.13 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.58 Total: 15.28 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.14 -10.27 -42.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390772661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.964 kcal (2) G-P(sol) polarization free energy of solvation -32.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.69 seconds