Wall clock time and date at job start Tue Mar 17 2020 23:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37989 * 124.79102 * 2 1 4 4 C 1.39058 * 133.22072 * 359.97438 * 3 2 1 5 5 C 1.37826 * 119.93319 * 180.02562 * 4 3 2 6 6 C 1.38700 * 120.63113 * 0.02562 * 5 4 3 7 7 C 1.37801 * 120.30750 * 359.97438 * 6 5 4 8 8 C 1.39247 * 119.66191 * 359.97438 * 7 6 5 9 9 C 1.47333 * 134.02338 * 179.97438 * 8 7 6 10 Xx 1.57000 * 126.75606 * 0.02562 * 9 8 7 11 10 O 1.43472 * 127.55498 * 179.70815 * 10 9 8 12 11 C 1.43956 * 104.84484 * 219.55319 * 11 10 9 13 12 C 1.52999 * 110.53129 * 217.70270 * 12 11 10 14 13 C 1.53005 * 110.21549 * 95.34117 * 12 11 10 15 14 C 1.54232 * 104.74052 * 336.60233 * 12 11 10 16 15 C 1.52998 * 110.39005 * 241.00863 * 15 12 11 17 16 C 1.53005 * 110.48697 * 118.66980 * 15 12 11 18 17 O 1.43469 * 127.55477 * 0.02562 * 10 9 8 19 18 C 1.35338 * 124.79430 * 180.02562 * 2 1 3 20 19 C 1.50699 * 125.09683 * 359.97438 * 19 2 1 21 20 O 1.42904 * 109.46850 * 49.74616 * 20 19 2 22 21 Si 1.86293 * 109.47244 * 289.74450 * 20 19 2 23 22 H 1.48503 * 109.47092 * 66.38919 * 22 20 19 24 23 H 1.48501 * 109.47440 * 186.38661 * 22 20 19 25 24 H 1.48501 * 109.47242 * 306.38819 * 22 20 19 26 25 H 1.08997 * 109.47068 * 84.87253 * 1 2 3 27 26 H 1.09001 * 109.46826 * 204.87296 * 1 2 3 28 27 H 1.08996 * 109.47115 * 324.86663 * 1 2 3 29 28 H 1.07996 * 120.03584 * 0.04392 * 4 3 2 30 29 H 1.07997 * 119.68660 * 180.02562 * 5 4 3 31 30 H 1.08001 * 119.84579 * 180.26544 * 6 5 4 32 31 H 1.07999 * 120.17019 * 180.02562 * 7 6 5 33 32 H 1.08997 * 109.46994 * 175.40675 * 13 12 11 34 33 H 1.09001 * 109.47531 * 295.41175 * 13 12 11 35 34 H 1.09006 * 109.46611 * 55.40573 * 13 12 11 36 35 H 1.08998 * 109.47057 * 304.77781 * 14 12 11 37 36 H 1.09002 * 109.46703 * 64.77627 * 14 12 11 38 37 H 1.09003 * 109.46984 * 184.77477 * 14 12 11 39 38 H 1.09004 * 109.46608 * 176.73287 * 16 15 12 40 39 H 1.09003 * 109.47098 * 296.72953 * 16 15 12 41 40 H 1.08998 * 109.47202 * 56.73686 * 16 15 12 42 41 H 1.09005 * 109.46905 * 303.20857 * 17 15 12 43 42 H 1.08990 * 109.46955 * 63.20992 * 17 15 12 44 43 H 1.09001 * 109.46486 * 183.21258 * 17 15 12 45 44 H 1.09003 * 109.47084 * 169.74322 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2524 1.1332 0.0000 4 6 1.9636 2.4935 -0.0005 5 6 2.9891 3.4143 -0.0008 6 6 4.3122 2.9984 -0.0013 7 6 4.6190 1.6550 -0.0009 8 6 3.5927 0.7139 0.0006 9 6 3.5541 -0.7590 0.0009 10 8 4.7693 -3.1657 0.0063 11 6 5.8411 -3.5439 0.8898 12 6 6.5578 -4.7883 0.3619 13 6 5.3008 -3.7959 2.2989 14 6 6.7961 -2.3328 0.8891 15 6 8.1730 -2.7400 0.3607 16 6 6.9186 -1.7466 2.2971 17 8 6.1778 -1.3795 -0.0005 18 6 2.2373 -1.1114 -0.0005 19 6 1.7192 -2.5265 -0.0006 20 8 0.7375 -2.6743 -1.0285 21 14 0.9491 -2.9060 1.6527 22 1 -0.2670 -2.0735 1.8352 23 1 0.5781 -4.3429 1.7080 24 1 1.9223 -2.6042 2.7331 25 1 -0.3633 0.0918 -1.0235 26 1 -0.3633 -0.9324 0.4323 27 1 -0.3633 0.8404 0.5914 28 1 0.9367 2.8281 -0.0002 29 1 2.7602 4.4697 -0.0008 30 1 5.1059 3.7309 0.0027 31 1 5.6500 1.3337 -0.0008 32 1 7.4145 -5.0113 0.9979 33 1 5.8702 -5.6341 0.3688 34 1 6.8993 -4.6060 -0.6571 35 1 4.7579 -2.9155 2.6427 36 1 4.6285 -4.6538 2.2821 37 1 6.1310 -3.9981 2.9756 38 1 8.8176 -1.8623 0.3120 39 1 8.6149 -3.4787 1.0295 40 1 8.0675 -3.1690 -0.6357 41 1 5.9290 -1.4756 2.6651 42 1 7.3631 -2.4874 2.9616 43 1 7.5508 -0.8592 2.2673 44 1 2.5439 -3.2154 -0.1840 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390772661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 23:22:09 Heat of formation + Delta-G solvation = 113.626721 kcal Electronic energy + Delta-G solvation = -26317.661451 eV Core-core repulsion = 22709.832173 eV Total energy + Delta-G solvation = -3607.829278 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.159 amu Computer time = 4.94 seconds Orbital eigenvalues (eV) -42.58293 -39.40956 -38.31584 -34.20510 -33.83728 -33.47865 -32.03397 -31.24788 -30.03844 -29.93277 -29.83413 -27.06644 -26.54751 -25.31335 -23.19600 -22.86000 -21.97481 -20.36460 -18.78316 -17.57414 -17.28637 -16.74817 -16.71340 -16.43313 -16.14044 -15.67712 -15.52564 -14.97909 -14.81448 -14.48498 -14.35872 -13.98346 -13.84055 -13.66332 -13.61527 -13.45767 -13.26381 -13.13122 -13.05628 -12.96879 -12.66806 -12.40909 -12.33242 -12.14658 -12.00905 -11.99806 -11.91148 -11.88152 -11.61695 -10.76026 -10.28982 -9.94324 -9.37686 -9.32971 -8.77203 -8.58177 -7.88743 -5.67394 -2.53795 0.03341 0.46897 1.13530 1.30037 1.39218 1.46345 1.78201 2.33254 2.79220 3.45104 3.55096 3.67866 3.83591 3.86516 3.96826 4.05937 4.06980 4.25674 4.26586 4.34803 4.41306 4.43980 4.46615 4.55525 4.58961 4.64563 4.66756 4.68007 4.69605 4.77563 4.77736 4.94579 4.96251 5.03955 5.05019 5.16878 5.19491 5.28313 5.28838 5.47514 5.54618 5.57212 5.75445 5.86038 5.99553 6.15410 6.34443 7.39474 Molecular weight = 305.16amu Principal moments of inertia in cm(-1) A = 0.011843 B = 0.007095 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.707311 B = 3945.558938 C = 5664.394641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.458 5.458 3 C 0.084 3.916 4 C -0.119 4.119 5 C -0.077 4.077 6 C -0.132 4.132 7 C -0.073 4.073 8 C -0.121 4.121 9 C 0.046 3.954 10 O -0.532 6.532 11 C 0.126 3.874 12 C -0.134 4.134 13 C -0.151 4.151 14 C 0.133 3.867 15 C -0.133 4.133 16 C -0.145 4.145 17 O -0.541 6.541 18 C 0.094 3.906 19 C -0.019 4.019 20 O -0.903 6.903 21 Si 0.968 3.032 22 H -0.245 1.245 23 H -0.275 1.275 24 H -0.268 1.268 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.124 0.876 28 H 0.164 0.836 29 H 0.181 0.819 30 H 0.165 0.835 31 H 0.122 0.878 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.061 0.939 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.050 0.950 41 H 0.045 0.955 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.283 10.466 10.396 16.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.144 5.144 3 C -0.019 4.019 4 C -0.139 4.139 5 C -0.096 4.096 6 C -0.150 4.150 7 C -0.091 4.091 8 C -0.126 4.126 9 C 0.034 3.966 10 O -0.465 6.465 11 C 0.064 3.936 12 C -0.191 4.191 13 C -0.208 4.208 14 C 0.070 3.930 15 C -0.190 4.190 16 C -0.202 4.202 17 O -0.475 6.475 18 C -0.017 4.017 19 C -0.133 4.133 20 O -0.851 6.851 21 Si 0.790 3.210 22 H -0.169 1.169 23 H -0.200 1.200 24 H -0.194 1.194 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.142 0.858 28 H 0.182 0.818 29 H 0.198 0.802 30 H 0.182 0.818 31 H 0.140 0.860 32 H 0.128 0.872 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.126 0.874 38 H 0.093 0.907 39 H 0.122 0.878 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.118 0.882 43 H 0.092 0.908 44 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 6.928 10.563 10.534 16.448 hybrid contribution 0.520 -1.365 -1.266 1.933 sum 7.448 9.198 9.268 15.032 Atomic orbital electron populations 1.22336 0.74379 1.05045 1.04130 1.43968 1.07307 1.01939 1.61176 1.18797 0.86200 0.90041 1.06884 1.20557 1.02551 0.86018 1.04749 1.21424 0.90806 1.00854 0.96524 1.21388 0.98430 0.93682 1.01536 1.20722 0.97468 0.92817 0.98136 1.19717 0.94356 0.87399 1.11121 1.33387 0.72188 0.73983 1.17024 1.95176 1.42312 1.43647 1.65379 1.24065 0.89714 0.86297 0.93532 1.22446 1.01357 0.93313 1.02030 1.22557 1.02100 1.01312 0.94875 1.24017 0.87901 0.87122 0.93916 1.22425 0.91687 1.02962 1.01946 1.22463 1.01987 1.01635 0.94116 1.95119 1.45419 1.42016 1.64973 1.22940 0.87936 0.94910 0.95924 1.23726 0.96526 0.86076 1.06939 1.94897 1.51972 1.91882 1.46363 0.86042 0.80335 0.79729 0.74852 1.16941 1.19992 1.19429 0.91061 0.90653 0.85817 0.81819 0.80184 0.81757 0.86036 0.87214 0.91684 0.92846 0.93561 0.92053 0.87417 0.90692 0.87760 0.93077 0.93594 0.88246 0.90770 0.97490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 114. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.16 9.97 127.77 1.27 4.43 16 2 N -0.46 -21.43 3.12 -524.17 -1.64 -23.06 16 3 C 0.08 3.34 6.79 38.91 0.26 3.60 16 4 C -0.12 -3.19 9.97 22.37 0.22 -2.97 16 5 C -0.08 -1.63 10.01 22.28 0.22 -1.41 16 6 C -0.13 -3.27 10.03 22.28 0.22 -3.04 16 7 C -0.07 -2.64 10.09 22.41 0.23 -2.41 16 8 C -0.12 -5.47 6.39 -20.11 -0.13 -5.60 16 9 C 0.05 2.60 11.38 24.22 0.28 2.87 16 10 O -0.53 -31.17 12.23 -125.78 -1.54 -32.71 16 11 C 0.13 5.27 1.56 -10.38 -0.02 5.25 16 12 C -0.13 -4.39 7.79 71.98 0.56 -3.83 16 13 C -0.15 -5.34 7.78 71.98 0.56 -4.78 16 14 C 0.13 5.14 1.57 -10.37 -0.02 5.12 16 15 C -0.13 -3.87 7.78 71.98 0.56 -3.31 16 16 C -0.14 -4.42 7.79 71.98 0.56 -3.86 16 17 O -0.54 -28.39 14.24 -125.78 -1.79 -30.18 16 18 C 0.09 5.35 5.08 41.57 0.21 5.56 16 19 C -0.02 -1.17 2.89 71.24 0.21 -0.96 16 20 O -0.90 -66.36 16.85 -148.98 -2.51 -68.87 16 21 Si 0.97 48.92 26.93 68.60 1.85 50.77 16 22 H -0.25 -11.04 5.86 99.48 0.58 -10.46 16 23 H -0.27 -13.84 7.11 99.48 0.71 -13.13 16 24 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 25 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 26 H 0.07 3.39 4.20 -2.39 -0.01 3.38 16 27 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 28 H 0.16 3.17 8.06 -2.91 -0.02 3.14 16 29 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 30 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 31 H 0.12 4.61 8.06 -2.91 -0.02 4.58 16 32 H 0.11 2.41 6.90 -2.39 -0.02 2.39 16 33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.05 1.87 6.72 -2.38 -0.02 1.85 16 35 H 0.05 1.82 6.73 -2.39 -0.02 1.81 16 36 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.11 2.60 6.90 -2.39 -0.02 2.58 16 38 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.10 2.06 7.00 -2.39 -0.02 2.04 16 40 H 0.05 1.64 6.60 -2.39 -0.02 1.63 16 41 H 0.04 1.61 6.62 -2.38 -0.02 1.60 16 42 H 0.10 2.13 7.01 -2.39 -0.02 2.11 16 43 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.01 0.56 5.84 -2.39 -0.01 0.55 16 Total: -1.00 -99.13 355.92 1.21 -97.92 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.63 Total: 11.47 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: 5.21 Total: -5.34 kcal Atomic # 7 Polarization: -21.43 SS G_CDS: -1.64 Total: -23.06 kcal Atomic # 8 Polarization: -125.92 SS G_CDS: -5.84 Total: -131.76 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 1.85 Total: 50.77 kcal Total: -99.13 1.21 -97.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390772661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.544 kcal (2) G-P(sol) polarization free energy of solvation -99.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.94 seconds