Wall clock time and date at job start Tue Mar 17 2020 22:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35997 * 117.00016 * 2 1 4 4 C 1.39441 * 120.01656 * 179.97438 * 3 2 1 5 5 O 1.35771 * 119.95181 * 0.02562 * 4 3 2 6 6 C 1.42899 * 116.99627 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.46609 * 179.97438 * 6 5 4 8 8 C 1.38242 * 120.00125 * 269.72466 * 7 6 5 9 9 C 1.38228 * 119.99919 * 179.76882 * 8 7 6 10 10 C 1.38243 * 120.00133 * 0.50693 * 9 8 7 11 11 C 1.38237 * 119.99647 * 359.74838 * 10 9 8 12 12 C 1.38236 * 120.00389 * 359.97438 * 11 10 9 13 13 C 1.38871 * 120.09361 * 180.02562 * 4 3 2 14 14 C 1.37785 * 120.12650 * 359.97438 * 13 4 3 15 15 C 1.50697 * 119.98295 * 180.02562 * 14 13 4 16 16 O 1.42901 * 109.47282 * 105.00115 * 15 14 13 17 17 Si 1.86299 * 109.47333 * 344.99926 * 15 14 13 18 18 H 1.48506 * 109.47048 * 60.00361 * 17 15 14 19 19 H 1.48500 * 109.47193 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47519 * 300.00016 * 17 15 14 21 21 C 1.39535 * 120.02640 * 0.02667 * 14 13 4 22 Xx 1.57007 * 120.04762 * 179.97438 * 21 14 13 23 22 O 1.42009 * 119.99637 * 359.97438 * 22 21 14 24 23 O 1.41992 * 120.00117 * 180.02562 * 22 21 14 25 24 C 1.38132 * 120.01484 * 359.97438 * 3 2 1 26 25 H 1.09006 * 109.46862 * 179.97438 * 1 2 3 27 26 H 1.08991 * 109.47284 * 299.99950 * 1 2 3 28 27 H 1.09006 * 109.46931 * 60.00479 * 1 2 3 29 28 H 1.08991 * 109.47368 * 300.00001 * 6 5 4 30 29 H 1.08997 * 109.47169 * 60.00653 * 6 5 4 31 30 H 1.08003 * 119.99735 * 0.02562 * 8 7 6 32 31 H 1.07996 * 120.00050 * 180.23275 * 9 8 7 33 32 H 1.07995 * 120.00026 * 179.72828 * 10 9 8 34 33 H 1.08004 * 119.99862 * 179.97438 * 11 10 9 35 34 H 1.07996 * 120.00218 * 179.97438 * 12 11 10 36 35 H 1.07999 * 119.93484 * 180.27381 * 13 4 3 37 36 H 1.09004 * 109.47010 * 224.99837 * 15 14 13 38 37 H 0.96705 * 113.99564 * 59.99528 * 16 15 14 39 38 H 0.96692 * 113.99455 * 180.02562 * 23 22 21 40 39 H 0.96709 * 113.99871 * 179.97438 * 24 22 21 41 40 H 1.08002 * 120.06060 * 359.95781 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4389 1.2851 0.0005 5 8 4.1778 0.1460 0.0005 6 6 5.5990 0.2947 0.0017 7 6 6.2463 -1.0662 0.0021 8 6 6.5475 -1.6880 1.1995 9 6 7.1368 -2.9384 1.1999 10 6 7.4347 -3.5625 0.0029 11 6 7.1384 -2.9384 -1.1944 12 6 6.5437 -1.6905 -1.1949 13 6 4.0711 2.5216 0.0011 14 6 3.3247 3.6798 0.0005 15 6 4.0141 5.0199 0.0006 16 8 3.9224 5.6028 -1.3010 17 14 5.8066 4.7962 0.4559 18 1 6.4610 3.9031 -0.5337 19 1 6.4857 6.1169 0.4565 20 1 5.9020 4.1906 1.8084 21 6 1.9310 3.6124 0.0000 22 8 1.7289 6.1951 0.0011 23 8 -0.3381 4.8621 0.0001 24 6 1.2944 2.3704 -0.0005 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 5.9076 0.8439 -0.8877 29 1 5.9062 0.8430 0.8922 30 1 6.3184 -1.1986 2.1347 31 1 7.3687 -3.4258 2.1353 32 1 7.8992 -4.5375 0.0033 33 1 7.3714 -3.4258 -2.1296 34 1 6.3126 -1.2028 -2.1303 35 1 5.1497 2.5755 -0.0030 36 1 3.5337 5.6756 0.7269 37 1 3.0155 5.7483 -1.6037 38 1 1.1228 6.9485 0.0014 39 1 -0.7744 5.7252 0.0005 40 1 0.2158 2.3153 -0.0016 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309982767.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 22:58:47 Heat of formation + Delta-G solvation = 68.052151 kcal Electronic energy + Delta-G solvation = -25037.404035 eV Core-core repulsion = 21180.390999 eV Total energy + Delta-G solvation = -3857.013036 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.123 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.40566 -40.63172 -39.74517 -39.09388 -37.02915 -33.54009 -32.97129 -32.73274 -32.36978 -31.98708 -31.19006 -28.92224 -27.85329 -26.37572 -24.10394 -23.69004 -22.82568 -22.30292 -20.05070 -18.78638 -18.61331 -17.96630 -17.77653 -17.67232 -16.87801 -16.72462 -16.48089 -15.99590 -15.81433 -15.67029 -15.44424 -15.14647 -14.94547 -14.67263 -14.58920 -14.46580 -14.13656 -13.91923 -13.88921 -13.26300 -13.04417 -12.64430 -12.58834 -12.31429 -12.20315 -12.06345 -12.00818 -11.56560 -11.31497 -11.04958 -10.78656 -10.60594 -9.99382 -9.98992 -9.75648 -9.52068 -6.18475 -3.04204 -0.70492 -0.60684 0.05663 0.33706 1.03675 1.32751 1.38165 1.62851 1.69029 1.70947 1.86409 2.75927 2.86307 2.89821 3.04648 3.22399 3.44522 3.54267 3.65931 3.84178 3.85358 3.92810 3.97082 3.98082 4.00693 4.01299 4.09422 4.13698 4.30336 4.41658 4.42456 4.52908 4.56658 4.80597 4.84251 4.94994 5.35516 5.40792 5.45369 5.45976 5.86601 5.89421 6.52185 6.69602 6.89288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.280 6.280 3 C 0.146 3.854 4 C 0.134 3.866 5 O -0.276 6.276 6 C 0.089 3.911 7 C -0.103 4.103 8 C -0.092 4.092 9 C -0.123 4.123 10 C -0.105 4.105 11 C -0.123 4.123 12 C -0.092 4.092 13 C -0.155 4.155 14 C -0.088 4.088 15 C -0.084 4.084 16 O -0.533 6.533 17 Si 1.000 3.000 18 H -0.248 1.248 19 H -0.243 1.243 20 H -0.242 1.242 21 C 0.323 3.677 22 O -0.656 6.656 23 O -0.662 6.662 24 C -0.168 4.168 25 H 0.115 0.885 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.174 0.826 36 H 0.109 0.891 37 H 0.379 0.621 38 H 0.336 0.664 39 H 0.337 0.663 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.887 -5.606 0.969 6.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.193 6.193 3 C 0.099 3.901 4 C 0.087 3.913 5 O -0.189 6.189 6 C 0.015 3.985 7 C -0.103 4.103 8 C -0.110 4.110 9 C -0.141 4.141 10 C -0.123 4.123 11 C -0.141 4.141 12 C -0.110 4.110 13 C -0.173 4.173 14 C -0.090 4.090 15 C -0.191 4.191 16 O -0.342 6.342 17 Si 0.818 3.182 18 H -0.172 1.172 19 H -0.166 1.166 20 H -0.165 1.165 21 C 0.311 3.689 22 O -0.488 6.488 23 O -0.490 6.490 24 C -0.187 4.187 25 H 0.133 0.867 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.191 0.809 36 H 0.127 0.873 37 H 0.232 0.768 38 H 0.173 0.827 39 H 0.172 0.828 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 5.166 -7.380 1.218 9.090 hybrid contribution -2.806 2.206 -0.202 3.575 sum 2.360 -5.174 1.016 5.777 Atomic orbital electron populations 1.23413 0.76537 1.05697 1.02403 1.86335 1.22551 1.22422 1.87953 1.17522 0.88174 0.83487 1.00949 1.18399 0.88346 0.86562 0.98010 1.86319 1.19069 1.26367 1.87145 1.21931 0.77256 0.96180 1.03101 1.19298 1.01419 0.95407 0.94143 1.21104 0.97420 0.95143 0.97373 1.21214 0.99152 0.95154 0.98553 1.21334 0.98448 0.99934 0.92552 1.21219 0.99093 0.95191 0.98558 1.21110 0.97327 0.95136 0.97416 1.21028 1.00588 0.87931 1.07741 1.20598 0.88058 0.98873 1.01422 1.25525 1.12776 0.89448 0.91347 1.86584 1.34466 1.82794 1.30391 0.84746 0.71618 0.82239 0.79571 1.17201 1.16573 1.16477 1.27905 0.76278 0.57503 1.07211 1.93318 1.28401 1.27996 1.99074 1.93474 1.30417 1.25093 1.99985 1.21267 1.04943 0.85661 1.06806 0.86670 0.91535 0.91539 0.90002 0.90169 0.85603 0.85473 0.85587 0.85467 0.85590 0.80907 0.87345 0.76838 0.82651 0.82753 0.79720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.04 9.81 101.05 0.99 0.95 16 2 O -0.28 0.04 10.28 -34.33 -0.35 -0.31 16 3 C 0.15 -0.03 6.70 -39.17 -0.26 -0.29 16 4 C 0.13 -0.06 6.71 -38.90 -0.26 -0.32 16 5 O -0.28 0.01 9.89 -33.63 -0.33 -0.32 16 6 C 0.09 -0.18 4.86 36.01 0.18 -0.01 16 7 C -0.10 0.08 5.51 -104.62 -0.58 -0.50 16 8 C -0.09 0.08 9.70 -39.58 -0.38 -0.30 16 9 C -0.12 0.12 10.05 -39.58 -0.40 -0.28 16 10 C -0.10 0.10 10.05 -39.58 -0.40 -0.30 16 11 C -0.12 0.11 10.05 -39.58 -0.40 -0.29 16 12 C -0.09 0.07 9.70 -39.58 -0.38 -0.31 16 13 C -0.15 0.17 7.63 -39.51 -0.30 -0.13 16 14 C -0.09 -0.06 5.29 -104.31 -0.55 -0.61 16 15 C -0.08 -0.13 1.80 36.00 0.06 -0.06 16 16 O -0.53 -1.70 12.45 -54.85 -0.68 -2.38 16 17 Si 1.00 -0.49 25.75 -169.99 -4.38 -4.86 16 18 H -0.25 0.36 6.73 56.52 0.38 0.74 16 19 H -0.24 -0.24 7.11 56.52 0.40 0.16 16 20 H -0.24 0.43 7.11 56.52 0.40 0.84 16 21 C 0.32 0.67 9.73 -38.60 -0.38 0.29 16 22 O -0.66 -3.46 12.11 -65.64 -0.80 -4.25 16 23 O -0.66 -4.67 17.24 -57.73 -1.00 -5.67 16 24 C -0.17 -0.03 8.74 -39.13 -0.34 -0.37 16 25 H 0.12 -0.54 8.14 -51.93 -0.42 -0.96 16 26 H 0.07 -0.26 7.66 -51.93 -0.40 -0.66 16 27 H 0.07 -0.26 7.66 -51.93 -0.40 -0.65 16 28 H 0.08 -0.30 7.59 -51.93 -0.39 -0.69 16 29 H 0.08 -0.32 7.60 -51.93 -0.39 -0.72 16 30 H 0.13 -0.32 8.06 -52.48 -0.42 -0.74 16 31 H 0.13 -0.33 8.06 -52.49 -0.42 -0.76 16 32 H 0.13 -0.33 8.06 -52.49 -0.42 -0.75 16 33 H 0.13 -0.32 8.06 -52.48 -0.42 -0.74 16 34 H 0.13 -0.28 8.06 -52.49 -0.42 -0.71 16 35 H 0.17 -0.51 3.09 -52.49 -0.16 -0.67 16 36 H 0.11 0.28 5.98 -51.93 -0.31 -0.03 16 37 H 0.38 1.22 7.03 45.56 0.32 1.54 16 38 H 0.34 1.14 8.90 45.56 0.41 1.55 16 39 H 0.34 1.53 8.90 45.56 0.41 1.93 16 40 H 0.19 -0.10 6.00 -52.49 -0.31 -0.41 16 LS Contribution 343.84 15.07 5.18 5.18 Total: 0.00 -8.56 343.84 -8.35 -16.91 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -2.59 Total: -1.75 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -3.40 Total: -2.54 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -3.16 Total: -12.94 kcal Atomic # 14 Polarization: -0.49 SS G_CDS: -4.38 Total: -4.86 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -8.56 -8.35 -16.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309982767.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.961 kcal (2) G-P(sol) polarization free energy of solvation -8.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds