Wall clock time and date at job start Tue Mar 17 2020 22:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35997 * 117.00016 * 2 1 4 4 C 1.39441 * 120.01656 * 179.97438 * 3 2 1 5 5 O 1.35771 * 119.95181 * 0.02562 * 4 3 2 6 6 C 1.42899 * 116.99627 * 180.02562 * 5 4 3 7 7 C 1.50704 * 109.46609 * 179.97438 * 6 5 4 8 8 C 1.38242 * 120.00125 * 269.72466 * 7 6 5 9 9 C 1.38228 * 119.99919 * 179.76882 * 8 7 6 10 10 C 1.38243 * 120.00133 * 0.50693 * 9 8 7 11 11 C 1.38237 * 119.99647 * 359.74838 * 10 9 8 12 12 C 1.38236 * 120.00389 * 359.97438 * 11 10 9 13 13 C 1.38871 * 120.09361 * 180.02562 * 4 3 2 14 14 C 1.37785 * 120.12650 * 359.97438 * 13 4 3 15 15 C 1.50697 * 119.98295 * 180.02562 * 14 13 4 16 16 O 1.42901 * 109.47282 * 105.00115 * 15 14 13 17 17 Si 1.86299 * 109.47333 * 344.99926 * 15 14 13 18 18 H 1.48506 * 109.47048 * 60.00361 * 17 15 14 19 19 H 1.48500 * 109.47193 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47519 * 300.00016 * 17 15 14 21 21 C 1.39535 * 120.02640 * 0.02667 * 14 13 4 22 Xx 1.57007 * 120.04762 * 179.97438 * 21 14 13 23 22 O 1.42009 * 119.99637 * 359.97438 * 22 21 14 24 23 O 1.41992 * 120.00117 * 180.02562 * 22 21 14 25 24 C 1.38132 * 120.01484 * 359.97438 * 3 2 1 26 25 H 1.09006 * 109.46862 * 179.97438 * 1 2 3 27 26 H 1.08991 * 109.47284 * 299.99950 * 1 2 3 28 27 H 1.09006 * 109.46931 * 60.00479 * 1 2 3 29 28 H 1.08991 * 109.47368 * 300.00001 * 6 5 4 30 29 H 1.08997 * 109.47169 * 60.00653 * 6 5 4 31 30 H 1.08003 * 119.99735 * 0.02562 * 8 7 6 32 31 H 1.07996 * 120.00050 * 180.23275 * 9 8 7 33 32 H 1.07995 * 120.00026 * 179.72828 * 10 9 8 34 33 H 1.08004 * 119.99862 * 179.97438 * 11 10 9 35 34 H 1.07996 * 120.00218 * 179.97438 * 12 11 10 36 35 H 1.07999 * 119.93484 * 180.27381 * 13 4 3 37 36 H 1.09004 * 109.47010 * 224.99837 * 15 14 13 38 37 H 0.96705 * 113.99564 * 59.99528 * 16 15 14 39 38 H 0.96692 * 113.99455 * 180.02562 * 23 22 21 40 39 H 0.96709 * 113.99871 * 179.97438 * 24 22 21 41 40 H 1.08002 * 120.06060 * 359.95781 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4389 1.2851 0.0005 5 8 4.1778 0.1460 0.0005 6 6 5.5990 0.2947 0.0017 7 6 6.2463 -1.0662 0.0021 8 6 6.5475 -1.6880 1.1995 9 6 7.1368 -2.9384 1.1999 10 6 7.4347 -3.5625 0.0029 11 6 7.1384 -2.9384 -1.1944 12 6 6.5437 -1.6905 -1.1949 13 6 4.0711 2.5216 0.0011 14 6 3.3247 3.6798 0.0005 15 6 4.0141 5.0199 0.0006 16 8 3.9224 5.6028 -1.3010 17 14 5.8066 4.7962 0.4559 18 1 6.4610 3.9031 -0.5337 19 1 6.4857 6.1169 0.4565 20 1 5.9020 4.1906 1.8084 21 6 1.9310 3.6124 0.0000 22 8 1.7289 6.1951 0.0011 23 8 -0.3381 4.8621 0.0001 24 6 1.2944 2.3704 -0.0005 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 5.9076 0.8439 -0.8877 29 1 5.9062 0.8430 0.8922 30 1 6.3184 -1.1986 2.1347 31 1 7.3687 -3.4258 2.1353 32 1 7.8992 -4.5375 0.0033 33 1 7.3714 -3.4258 -2.1296 34 1 6.3126 -1.2028 -2.1303 35 1 5.1497 2.5755 -0.0030 36 1 3.5337 5.6756 0.7269 37 1 3.0155 5.7483 -1.6037 38 1 1.1228 6.9485 0.0014 39 1 -0.7744 5.7252 0.0005 40 1 0.2158 2.3153 -0.0016 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309982767.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 22:58:46 Heat of formation + Delta-G solvation = 65.454594 kcal Electronic energy + Delta-G solvation = -25037.516673 eV Core-core repulsion = 21180.390999 eV Total energy + Delta-G solvation = -3857.125674 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.123 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.45464 -40.52256 -39.69415 -39.14624 -37.19475 -33.42318 -33.24301 -32.85320 -32.60329 -31.82154 -31.22468 -28.83047 -27.68788 -26.47550 -24.10059 -23.53089 -22.88746 -22.17323 -20.03009 -18.86511 -18.60944 -18.05250 -17.65002 -17.61863 -16.74516 -16.71827 -16.42344 -16.01804 -15.87380 -15.59192 -15.56115 -15.16192 -15.02713 -14.82092 -14.66752 -14.29729 -14.08172 -13.88490 -13.80672 -13.17170 -12.84531 -12.60537 -12.42417 -12.15140 -12.04043 -11.98789 -11.87584 -11.71170 -11.55812 -11.22103 -11.02484 -10.68519 -10.11364 -9.84805 -9.84646 -9.57356 -6.58122 -3.16719 -0.83128 -0.70778 0.18878 0.48035 1.02007 1.37020 1.47446 1.62577 1.67483 1.75640 1.93219 2.69396 2.79804 2.88925 2.93953 3.23323 3.58715 3.59978 3.76482 3.79818 3.84854 4.03272 4.08595 4.14652 4.22486 4.23061 4.24792 4.26883 4.30621 4.51300 4.59565 4.64955 4.70051 4.71240 5.02266 5.12884 5.49753 5.55064 5.55706 5.61159 5.92369 6.05583 6.26032 6.49849 6.62215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.288 6.288 3 C 0.154 3.846 4 C 0.150 3.850 5 O -0.284 6.284 6 C 0.077 3.923 7 C -0.112 4.112 8 C -0.103 4.103 9 C -0.136 4.136 10 C -0.118 4.118 11 C -0.136 4.136 12 C -0.104 4.104 13 C -0.137 4.137 14 C -0.084 4.084 15 C -0.103 4.103 16 O -0.542 6.542 17 Si 1.019 2.981 18 H -0.220 1.220 19 H -0.270 1.270 20 H -0.211 1.211 21 C 0.326 3.674 22 O -0.679 6.679 23 O -0.753 6.753 24 C -0.163 4.163 25 H 0.133 0.867 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.204 0.796 36 H 0.092 0.908 37 H 0.375 0.625 38 H 0.340 0.660 39 H 0.332 0.668 40 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.248 -7.798 1.272 9.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.201 6.201 3 C 0.106 3.894 4 C 0.101 3.899 5 O -0.196 6.196 6 C 0.004 3.996 7 C -0.113 4.113 8 C -0.121 4.121 9 C -0.154 4.154 10 C -0.136 4.136 11 C -0.154 4.154 12 C -0.122 4.122 13 C -0.155 4.155 14 C -0.085 4.085 15 C -0.208 4.208 16 O -0.351 6.351 17 Si 0.832 3.168 18 H -0.142 1.142 19 H -0.195 1.195 20 H -0.132 1.132 21 C 0.317 3.683 22 O -0.512 6.512 23 O -0.583 6.583 24 C -0.182 4.182 25 H 0.151 0.849 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.159 0.841 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.220 0.780 36 H 0.110 0.890 37 H 0.226 0.774 38 H 0.177 0.823 39 H 0.166 0.834 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 7.533 -9.634 1.519 12.324 hybrid contribution -3.272 2.620 -0.304 4.203 sum 4.261 -7.014 1.215 8.297 Atomic orbital electron populations 1.23697 0.74972 1.07173 1.03147 1.86340 1.24175 1.21933 1.87671 1.17523 0.88398 0.82981 1.00463 1.18439 0.88175 0.86823 0.96418 1.86330 1.20429 1.26258 1.86599 1.22278 0.75812 0.96066 1.05461 1.19491 1.01545 0.96129 0.94093 1.21381 0.97285 0.95270 0.98132 1.21477 0.99244 0.95524 0.99116 1.21586 0.98625 1.00595 0.92746 1.21468 0.99267 0.95549 0.99141 1.21370 0.97372 0.95324 0.98155 1.21196 1.01358 0.86310 1.06627 1.20718 0.86852 0.99515 1.01436 1.26048 1.15417 0.89103 0.90183 1.86568 1.34211 1.83093 1.31268 0.84647 0.68511 0.81861 0.81784 1.14226 1.19451 1.13228 1.27884 0.75199 0.53330 1.11840 1.93273 1.29137 1.29811 1.98984 1.93439 1.38799 1.26061 1.99986 1.21316 1.05535 0.84800 1.06509 0.84887 0.90788 0.90882 0.87925 0.87525 0.84149 0.84334 0.84539 0.84458 0.84459 0.78016 0.89018 0.77353 0.82275 0.83372 0.79068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.03 9.81 113.37 1.11 1.09 16 2 O -0.29 0.52 10.28 -79.55 -0.82 -0.30 16 3 C 0.15 -0.28 6.70 22.53 0.15 -0.12 16 4 C 0.15 -0.54 6.71 22.71 0.15 -0.39 16 5 O -0.28 0.92 9.89 -77.02 -0.76 0.16 16 6 C 0.08 -0.60 4.86 71.24 0.35 -0.26 16 7 C -0.11 0.43 5.51 -19.86 -0.11 0.32 16 8 C -0.10 0.38 9.70 22.27 0.22 0.60 16 9 C -0.14 0.42 10.05 22.27 0.22 0.64 16 10 C -0.12 0.32 10.05 22.27 0.22 0.55 16 11 C -0.14 0.37 10.05 22.27 0.22 0.60 16 12 C -0.10 0.33 9.70 22.27 0.22 0.55 16 13 C -0.14 0.70 7.63 22.31 0.17 0.87 16 14 C -0.08 -0.05 5.29 -19.66 -0.10 -0.16 16 15 C -0.10 -0.32 1.80 71.24 0.13 -0.19 16 16 O -0.54 -3.97 12.45 -130.23 -1.62 -5.59 16 17 Si 1.02 -3.34 25.75 68.60 1.77 -1.57 16 18 H -0.22 1.64 6.73 99.48 0.67 2.31 16 19 H -0.27 -0.44 7.11 99.48 0.71 0.27 16 20 H -0.21 1.63 7.11 99.48 0.71 2.34 16 21 C 0.33 1.68 9.73 22.90 0.22 1.90 16 22 O -0.68 -9.75 12.11 -119.90 -1.45 -11.21 16 23 O -0.75 -14.80 17.24 -127.47 -2.20 -17.00 16 24 C -0.16 -0.09 8.74 22.56 0.20 0.10 16 25 H 0.13 -1.43 8.14 -2.38 -0.02 -1.45 16 26 H 0.07 -0.62 7.66 -2.39 -0.02 -0.64 16 27 H 0.07 -0.60 7.66 -2.38 -0.02 -0.62 16 28 H 0.10 -1.20 7.59 -2.39 -0.02 -1.22 16 29 H 0.11 -1.37 7.60 -2.39 -0.02 -1.39 16 30 H 0.14 -1.05 8.06 -2.91 -0.02 -1.08 16 31 H 0.14 -0.88 8.06 -2.91 -0.02 -0.91 16 32 H 0.14 -0.81 8.06 -2.91 -0.02 -0.83 16 33 H 0.14 -0.80 8.06 -2.91 -0.02 -0.82 16 34 H 0.14 -0.88 8.06 -2.91 -0.02 -0.90 16 35 H 0.20 -2.14 3.09 -2.91 -0.01 -2.15 16 36 H 0.09 0.62 5.98 -2.39 -0.01 0.61 16 37 H 0.37 3.27 7.03 -74.05 -0.52 2.75 16 38 H 0.34 3.92 8.90 -74.06 -0.66 3.26 16 39 H 0.33 5.28 8.90 -74.05 -0.66 4.62 16 40 H 0.19 0.02 6.00 -2.91 -0.02 0.00 16 Total: 0.00 -23.55 343.84 -1.72 -25.27 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -0.01 Total: 4.15 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 3.37 Total: 6.10 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -6.85 Total: -33.94 kcal Atomic # 14 Polarization: -3.34 SS G_CDS: 1.77 Total: -1.57 kcal Total: -23.55 -1.72 -25.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309982767.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.721 kcal (2) G-P(sol) polarization free energy of solvation -23.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds