Wall clock time and date at job start Wed Mar 18 2020 00:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.54099 * 2 1 4 4 C 1.53017 * 109.50657 * 239.88689 * 2 1 3 5 5 N 1.46781 * 109.62206 * 300.03501 * 4 2 1 6 6 H 1.00894 * 109.41124 * 56.97394 * 5 4 2 7 7 C 1.39804 * 109.40800 * 176.74922 * 5 4 2 8 8 C 1.31000 * 119.99715 * 247.64864 * 7 5 4 9 9 C 1.50699 * 120.00059 * 6.99435 * 8 7 5 10 10 O 1.42901 * 109.47468 * 247.36426 * 9 8 7 11 11 Si 1.86306 * 109.47238 * 127.36606 * 9 8 7 12 12 H 1.48497 * 109.47252 * 180.02562 * 11 9 8 13 13 H 1.48495 * 109.46909 * 300.00339 * 11 9 8 14 14 H 1.48502 * 109.46748 * 60.00265 * 11 9 8 15 15 C 1.46776 * 109.83308 * 296.85439 * 5 4 2 16 16 H 1.09005 * 109.45070 * 303.09750 * 15 5 4 17 17 C 1.52999 * 109.44514 * 183.18785 * 15 5 4 18 18 C 1.53022 * 109.62171 * 63.14344 * 15 5 4 19 19 C 1.53133 * 109.25566 * 300.03682 * 18 15 5 20 20 H 1.08999 * 109.53964 * 176.89297 * 19 18 15 21 21 O 1.45208 * 109.53450 * 297.04783 * 19 18 15 22 22 C 1.34709 * 116.99839 * 270.00430 * 21 19 18 23 23 O 1.21475 * 120.00314 * 359.97438 * 22 21 19 24 24 C 1.47723 * 119.99774 * 180.02562 * 22 21 19 25 25 C 1.39626 * 120.15093 * 0.22563 * 24 22 21 26 26 C 1.37950 * 119.84908 * 180.23565 * 25 24 22 27 27 C 1.38369 * 120.14688 * 359.51100 * 26 25 24 28 28 C 1.38369 * 120.30196 * 0.28263 * 27 26 25 29 29 C 1.37939 * 120.15244 * 359.95224 * 28 27 26 30 30 H 1.09003 * 109.47119 * 299.89443 * 1 2 3 31 31 H 1.09004 * 109.46836 * 59.89153 * 1 2 3 32 32 H 1.08998 * 109.46745 * 179.88941 * 1 2 3 33 33 H 1.08998 * 109.44516 * 179.97438 * 4 2 1 34 34 H 1.09012 * 109.41878 * 60.06438 * 4 2 1 35 35 H 1.07999 * 120.00525 * 67.64470 * 7 5 4 36 36 H 1.08000 * 120.00297 * 187.00596 * 8 7 5 37 37 H 1.09001 * 109.47494 * 7.36656 * 9 8 7 38 38 H 0.96702 * 113.99940 * 179.97438 * 10 9 8 39 39 H 1.09003 * 109.47401 * 299.84940 * 17 15 5 40 40 H 1.09004 * 109.47067 * 59.85079 * 17 15 5 41 41 H 1.09003 * 109.47083 * 179.85216 * 17 15 5 42 42 H 1.09005 * 109.51004 * 180.09451 * 18 15 5 43 43 H 1.09008 * 109.53957 * 59.98725 * 18 15 5 44 44 H 1.07996 * 120.07637 * 0.02562 * 25 24 22 45 45 H 1.07996 * 119.92802 * 179.79262 * 26 25 24 46 46 H 1.08003 * 119.84702 * 180.25643 * 27 26 25 47 47 H 1.08007 * 119.91715 * 179.97438 * 28 27 26 48 48 H 1.08001 * 120.07504 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0410 -0.7236 -1.2477 5 7 1.5533 -2.1080 -1.2490 6 1 0.5456 -2.1086 -1.2003 7 6 1.9606 -2.7430 -2.4261 8 6 1.0721 -3.0913 -3.3235 9 6 -0.3659 -2.6698 -3.1633 10 8 -1.1754 -3.8216 -2.9180 11 14 -0.9428 -1.8257 -4.7208 12 1 -2.3595 -1.4098 -4.5628 13 1 -0.1015 -0.6289 -4.9758 14 1 -0.8268 -2.7652 -5.8650 15 6 2.0981 -2.8290 -0.0923 16 1 3.1869 -2.7834 -0.1161 17 6 1.6489 -4.2906 -0.1455 18 6 1.5893 -2.1864 1.1999 19 6 2.0414 -0.7242 1.2487 20 1 1.6352 -0.2466 2.1404 21 8 3.4918 -0.6653 1.2844 22 6 4.0745 -0.6719 2.4989 23 8 3.3897 -0.7249 3.5008 24 6 5.5462 -0.6135 2.6124 25 6 6.3361 -0.5466 1.4630 26 6 7.7101 -0.4972 1.5761 27 6 8.3052 -0.5037 2.8252 28 6 7.5282 -0.5655 3.9685 29 6 6.1534 -0.6201 3.8697 30 1 -0.3633 0.5122 0.8910 31 1 -0.3633 0.5155 -0.8891 32 1 -0.3633 -1.0277 -0.0020 33 1 3.1310 -0.7227 -1.2469 34 1 1.6784 -0.2103 -2.1384 35 1 3.0076 -2.9462 -2.5956 36 1 1.3700 -3.6807 -4.1780 37 1 -0.4511 -1.9803 -2.3235 38 1 -2.1153 -3.6247 -2.8042 39 1 0.5602 -4.3373 -0.1204 40 1 2.0111 -4.7488 -1.0659 41 1 2.0554 -4.8271 0.7119 42 1 1.9963 -2.7221 2.0576 43 1 0.5005 -2.2318 1.2255 44 1 5.8726 -0.5370 0.4876 45 1 8.3224 -0.4489 0.6878 46 1 9.3812 -0.4607 2.9082 47 1 7.9993 -0.5705 4.9404 48 1 5.5481 -0.6679 4.7629 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254439687.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 18 2020 00:06:01 Heat of formation + Delta-G solvation = 53.522103 kcal Electronic energy + Delta-G solvation = -28687.280435 eV Core-core repulsion = 24907.651467 eV Total energy + Delta-G solvation = -3779.628968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.182 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -46.04355 -42.97689 -41.02632 -40.23105 -39.26712 -37.84377 -36.86922 -34.91235 -33.52803 -33.02919 -31.42839 -29.82145 -29.32083 -27.70851 -26.17120 -25.85539 -24.63957 -24.17099 -23.29706 -22.73391 -20.91425 -20.42359 -20.38656 -19.97442 -19.52547 -19.18136 -18.89871 -18.54030 -17.99504 -17.57113 -17.28611 -17.07440 -16.93009 -16.74316 -16.61245 -16.46299 -16.28111 -15.94868 -15.87243 -15.54549 -15.26089 -15.20342 -15.08326 -14.90126 -14.77313 -14.51633 -14.47692 -14.39563 -14.08462 -13.85086 -13.76861 -13.64944 -13.54822 -13.26528 -13.16384 -13.05563 -12.76809 -12.24681 -11.13314 -11.06262 -1.88561 -1.43446 -1.34699 -0.68854 -0.66644 -0.03839 -0.01405 0.02705 0.32948 0.50253 0.62261 0.62749 0.83416 1.15435 1.19498 1.36601 1.51085 1.60123 1.66877 1.72364 1.74473 1.79390 1.93281 1.98906 2.09866 2.19616 2.27408 2.42764 2.47161 2.61723 2.68548 2.69889 2.77057 2.80815 2.82698 2.86655 2.88458 2.93545 2.96289 3.09653 3.14323 3.30152 3.31413 3.33333 3.37582 3.69176 3.84123 3.93780 4.16085 4.35245 4.44845 4.65921 4.78713 5.38613 Molecular weight = 320.18amu Principal moments of inertia in cm(-1) A = 0.021080 B = 0.003462 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.940773 B = 8085.493193 C = 8337.942588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.107 4.107 3 H 0.133 0.867 4 C -0.007 4.007 5 N -0.340 5.340 6 H 0.413 0.587 7 C -0.092 4.092 8 C -0.057 4.057 9 C -0.126 4.126 10 O -0.529 6.529 11 Si 0.951 3.049 12 H -0.234 1.234 13 H -0.242 1.242 14 H -0.230 1.230 15 C 0.032 3.968 16 H 0.143 0.857 17 C -0.178 4.178 18 C -0.159 4.159 19 C 0.079 3.921 20 H 0.117 0.883 21 O -0.353 6.353 22 C 0.515 3.485 23 O -0.491 6.491 24 C -0.138 4.138 25 C -0.065 4.065 26 C -0.132 4.132 27 C -0.074 4.074 28 C -0.126 4.126 29 C -0.051 4.051 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.142 0.858 34 H 0.135 0.865 35 H 0.198 0.802 36 H 0.177 0.823 37 H 0.054 0.946 38 H 0.398 0.602 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.121 0.879 43 H 0.108 0.892 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.136 0.864 47 H 0.139 0.861 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.747 -1.423 -7.493 8.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.125 4.125 3 H 0.151 0.849 4 C -0.127 4.127 5 N 0.076 4.924 6 H 0.257 0.743 7 C -0.198 4.198 8 C -0.075 4.075 9 C -0.234 4.234 10 O -0.338 6.338 11 Si 0.767 3.233 12 H -0.156 1.156 13 H -0.165 1.165 14 H -0.152 1.152 15 C -0.068 4.068 16 H 0.161 0.839 17 C -0.235 4.235 18 C -0.197 4.197 19 C 0.024 3.976 20 H 0.135 0.865 21 O -0.271 6.271 22 C 0.360 3.640 23 O -0.378 6.378 24 C -0.139 4.139 25 C -0.083 4.083 26 C -0.150 4.150 27 C -0.092 4.092 28 C -0.144 4.144 29 C -0.069 4.069 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.160 0.840 34 H 0.153 0.847 35 H 0.215 0.785 36 H 0.194 0.806 37 H 0.072 0.928 38 H 0.249 0.751 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.123 0.877 42 H 0.139 0.861 43 H 0.126 0.874 44 H 0.151 0.849 45 H 0.153 0.847 46 H 0.154 0.846 47 H 0.157 0.843 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.454 -1.338 -7.985 8.802 hybrid contribution -0.738 0.086 0.647 0.985 sum -4.192 -1.252 -7.338 8.543 Atomic orbital electron populations 1.22169 0.91800 1.02489 1.06554 1.21784 0.97598 1.02688 0.90467 0.84929 1.24066 1.06324 0.78611 1.03682 1.43968 1.19685 1.15213 1.13572 0.74257 1.22509 1.04032 1.06091 0.87160 1.23350 0.92578 0.92629 0.98921 1.25168 0.92533 0.94848 1.10888 1.86572 1.23703 1.28818 1.94669 0.85504 0.82749 0.79699 0.75374 1.15629 1.16480 1.15224 1.23497 1.04062 0.95112 0.84146 0.83931 1.22377 1.03939 0.90695 1.06490 1.22680 1.04118 0.95961 0.96934 1.22873 0.78589 0.95430 1.00755 0.86472 1.86556 1.22203 1.84902 1.33437 1.21304 0.89361 0.72516 0.80821 1.90920 1.64780 1.44985 1.37133 1.18988 0.88173 1.11371 0.95362 1.21356 0.93911 0.95515 0.97522 1.21276 0.94551 1.00784 0.98426 1.21665 1.01189 0.93912 0.92403 1.21311 0.93131 1.00159 0.99823 1.21373 0.95259 0.93793 0.96481 0.88745 0.89520 0.92795 0.83977 0.84727 0.78473 0.80591 0.92821 0.75114 0.90097 0.89431 0.87704 0.86109 0.87410 0.84899 0.84699 0.84648 0.84319 0.84224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 4.11 8.57 37.16 0.32 4.43 16 2 C -0.11 2.53 2.94 -90.54 -0.27 2.27 16 3 H 0.13 -3.05 8.14 -51.93 -0.42 -3.47 16 4 C -0.01 0.17 4.48 -3.88 -0.02 0.15 16 5 N -0.34 9.04 0.25 -166.59 -0.04 8.99 16 6 H 0.41 -11.20 3.12 -39.29 -0.12 -11.32 16 7 C -0.09 2.41 6.60 -15.63 -0.10 2.30 16 8 C -0.06 1.36 8.26 -36.03 -0.30 1.07 16 9 C -0.13 2.89 2.53 36.01 0.09 2.98 16 10 O -0.53 10.90 12.86 -35.23 -0.45 10.45 16 11 Si 0.95 -18.45 28.48 -169.99 -4.84 -23.29 16 12 H -0.23 4.06 7.11 56.52 0.40 4.46 16 13 H -0.24 4.52 7.11 56.52 0.40 4.92 16 14 H -0.23 3.74 7.11 56.52 0.40 4.14 16 15 C 0.03 -0.80 1.97 -67.77 -0.13 -0.93 16 16 H 0.14 -3.57 7.71 -51.93 -0.40 -3.97 16 17 C -0.18 4.12 8.96 37.16 0.33 4.45 16 18 C -0.16 3.56 4.66 -26.65 -0.12 3.44 16 19 C 0.08 -1.62 2.28 -26.59 -0.06 -1.68 16 20 H 0.12 -2.12 7.17 -51.93 -0.37 -2.49 16 21 O -0.35 6.39 8.03 -40.52 -0.33 6.06 16 22 C 0.52 -6.87 7.87 34.61 0.27 -6.60 16 23 O -0.49 4.94 15.61 -19.25 -0.30 4.64 16 24 C -0.14 1.70 5.87 -104.98 -0.62 1.09 16 25 C -0.06 0.91 9.62 -39.17 -0.38 0.53 16 26 C -0.13 1.72 10.03 -39.64 -0.40 1.33 16 27 C -0.07 0.88 10.04 -39.48 -0.40 0.48 16 28 C -0.13 1.43 10.03 -39.64 -0.40 1.03 16 29 C -0.05 0.56 9.60 -39.17 -0.38 0.18 16 30 H 0.09 -2.05 8.14 -51.93 -0.42 -2.47 16 31 H 0.09 -2.10 8.14 -51.93 -0.42 -2.52 16 32 H 0.05 -1.36 5.01 -51.93 -0.26 -1.62 16 33 H 0.14 -3.79 7.71 -51.93 -0.40 -4.19 16 34 H 0.13 -3.75 8.11 -51.92 -0.42 -4.17 16 35 H 0.20 -5.51 8.06 -52.49 -0.42 -5.93 16 36 H 0.18 -4.27 8.04 -52.49 -0.42 -4.69 16 37 H 0.05 -1.42 5.42 -51.93 -0.28 -1.71 16 38 H 0.40 -9.25 8.74 45.56 0.40 -8.85 16 39 H 0.08 -1.84 8.14 -51.93 -0.42 -2.26 16 40 H 0.09 -2.01 7.04 -51.93 -0.37 -2.38 16 41 H 0.10 -2.27 8.14 -51.93 -0.42 -2.69 16 42 H 0.12 -2.42 8.14 -51.93 -0.42 -2.85 16 43 H 0.11 -2.55 6.63 -51.92 -0.34 -2.90 16 44 H 0.13 -2.27 7.61 -52.49 -0.40 -2.67 16 45 H 0.14 -1.97 8.06 -52.49 -0.42 -2.40 16 46 H 0.14 -1.78 8.06 -52.48 -0.42 -2.20 16 47 H 0.14 -1.72 8.06 -52.48 -0.42 -2.14 16 48 H 0.14 -1.51 7.65 -52.49 -0.40 -1.91 16 LS Contribution 371.92 15.07 5.60 5.60 Total: 1.00 -29.58 371.92 -9.72 -39.30 By element: Atomic # 1 Polarization: -61.46 SS G_CDS: -6.82 Total: -68.28 kcal Atomic # 6 Polarization: 19.06 SS G_CDS: -2.55 Total: 16.52 kcal Atomic # 7 Polarization: 9.04 SS G_CDS: -0.04 Total: 8.99 kcal Atomic # 8 Polarization: 22.23 SS G_CDS: -1.08 Total: 21.15 kcal Atomic # 14 Polarization: -18.45 SS G_CDS: -4.84 Total: -23.29 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.58 -9.72 -39.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254439687.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.824 kcal (2) G-P(sol) polarization free energy of solvation -29.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds