Wall clock time and date at job start Wed Mar 18 2020 00:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.54099 * 2 1 4 4 C 1.53017 * 109.50657 * 239.88689 * 2 1 3 5 5 N 1.46781 * 109.62206 * 300.03501 * 4 2 1 6 6 H 1.00894 * 109.41124 * 56.97394 * 5 4 2 7 7 C 1.39804 * 109.40800 * 176.74922 * 5 4 2 8 8 C 1.31000 * 119.99715 * 247.64864 * 7 5 4 9 9 C 1.50699 * 120.00059 * 6.99435 * 8 7 5 10 10 O 1.42901 * 109.47468 * 247.36426 * 9 8 7 11 11 Si 1.86306 * 109.47238 * 127.36606 * 9 8 7 12 12 H 1.48497 * 109.47252 * 180.02562 * 11 9 8 13 13 H 1.48495 * 109.46909 * 300.00339 * 11 9 8 14 14 H 1.48502 * 109.46748 * 60.00265 * 11 9 8 15 15 C 1.46776 * 109.83308 * 296.85439 * 5 4 2 16 16 H 1.09005 * 109.45070 * 303.09750 * 15 5 4 17 17 C 1.52999 * 109.44514 * 183.18785 * 15 5 4 18 18 C 1.53022 * 109.62171 * 63.14344 * 15 5 4 19 19 C 1.53133 * 109.25566 * 300.03682 * 18 15 5 20 20 H 1.08999 * 109.53964 * 176.89297 * 19 18 15 21 21 O 1.45208 * 109.53450 * 297.04783 * 19 18 15 22 22 C 1.34709 * 116.99839 * 270.00430 * 21 19 18 23 23 O 1.21475 * 120.00314 * 359.97438 * 22 21 19 24 24 C 1.47723 * 119.99774 * 180.02562 * 22 21 19 25 25 C 1.39626 * 120.15093 * 0.22563 * 24 22 21 26 26 C 1.37950 * 119.84908 * 180.23565 * 25 24 22 27 27 C 1.38369 * 120.14688 * 359.51100 * 26 25 24 28 28 C 1.38369 * 120.30196 * 0.28263 * 27 26 25 29 29 C 1.37939 * 120.15244 * 359.95224 * 28 27 26 30 30 H 1.09003 * 109.47119 * 299.89443 * 1 2 3 31 31 H 1.09004 * 109.46836 * 59.89153 * 1 2 3 32 32 H 1.08998 * 109.46745 * 179.88941 * 1 2 3 33 33 H 1.08998 * 109.44516 * 179.97438 * 4 2 1 34 34 H 1.09012 * 109.41878 * 60.06438 * 4 2 1 35 35 H 1.07999 * 120.00525 * 67.64470 * 7 5 4 36 36 H 1.08000 * 120.00297 * 187.00596 * 8 7 5 37 37 H 1.09001 * 109.47494 * 7.36656 * 9 8 7 38 38 H 0.96702 * 113.99940 * 179.97438 * 10 9 8 39 39 H 1.09003 * 109.47401 * 299.84940 * 17 15 5 40 40 H 1.09004 * 109.47067 * 59.85079 * 17 15 5 41 41 H 1.09003 * 109.47083 * 179.85216 * 17 15 5 42 42 H 1.09005 * 109.51004 * 180.09451 * 18 15 5 43 43 H 1.09008 * 109.53957 * 59.98725 * 18 15 5 44 44 H 1.07996 * 120.07637 * 0.02562 * 25 24 22 45 45 H 1.07996 * 119.92802 * 179.79262 * 26 25 24 46 46 H 1.08003 * 119.84702 * 180.25643 * 27 26 25 47 47 H 1.08007 * 119.91715 * 179.97438 * 28 27 26 48 48 H 1.08001 * 120.07504 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0410 -0.7236 -1.2477 5 7 1.5533 -2.1080 -1.2490 6 1 0.5456 -2.1086 -1.2003 7 6 1.9606 -2.7430 -2.4261 8 6 1.0721 -3.0913 -3.3235 9 6 -0.3659 -2.6698 -3.1633 10 8 -1.1754 -3.8216 -2.9180 11 14 -0.9428 -1.8257 -4.7208 12 1 -2.3595 -1.4098 -4.5628 13 1 -0.1015 -0.6289 -4.9758 14 1 -0.8268 -2.7652 -5.8650 15 6 2.0981 -2.8290 -0.0923 16 1 3.1869 -2.7834 -0.1161 17 6 1.6489 -4.2906 -0.1455 18 6 1.5893 -2.1864 1.1999 19 6 2.0414 -0.7242 1.2487 20 1 1.6352 -0.2466 2.1404 21 8 3.4918 -0.6653 1.2844 22 6 4.0745 -0.6719 2.4989 23 8 3.3897 -0.7249 3.5008 24 6 5.5462 -0.6135 2.6124 25 6 6.3361 -0.5466 1.4630 26 6 7.7101 -0.4972 1.5761 27 6 8.3052 -0.5037 2.8252 28 6 7.5282 -0.5655 3.9685 29 6 6.1534 -0.6201 3.8697 30 1 -0.3633 0.5122 0.8910 31 1 -0.3633 0.5155 -0.8891 32 1 -0.3633 -1.0277 -0.0020 33 1 3.1310 -0.7227 -1.2469 34 1 1.6784 -0.2103 -2.1384 35 1 3.0076 -2.9462 -2.5956 36 1 1.3700 -3.6807 -4.1780 37 1 -0.4511 -1.9803 -2.3235 38 1 -2.1153 -3.6247 -2.8042 39 1 0.5602 -4.3373 -0.1204 40 1 2.0111 -4.7488 -1.0659 41 1 2.0554 -4.8271 0.7119 42 1 1.9963 -2.7221 2.0576 43 1 0.5005 -2.2318 1.2255 44 1 5.8726 -0.5370 0.4876 45 1 8.3224 -0.4489 0.6878 46 1 9.3812 -0.4607 2.9082 47 1 7.9993 -0.5705 4.9404 48 1 5.5481 -0.6679 4.7629 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000254439687.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 18 2020 00:06:00 Heat of formation + Delta-G solvation = 38.759876 kcal Electronic energy + Delta-G solvation = -28687.920573 eV Core-core repulsion = 24907.651467 eV Total energy + Delta-G solvation = -3780.269106 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.182 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.08658 -41.75269 -39.83114 -38.63404 -37.80135 -36.23607 -34.96493 -33.06594 -32.39278 -31.99559 -29.65372 -27.82537 -27.44647 -26.17713 -24.77286 -23.94345 -23.57347 -22.22589 -22.04024 -20.93141 -19.34197 -19.08357 -18.65758 -18.05302 -17.71248 -17.58766 -17.44298 -17.07222 -16.52597 -15.94982 -15.82243 -15.67819 -15.38521 -15.04220 -14.95536 -14.75124 -14.60329 -14.49457 -14.38139 -14.08471 -13.75431 -13.45837 -13.37360 -13.28014 -13.07387 -12.84475 -12.75336 -12.73614 -12.53435 -12.37300 -12.25481 -12.13996 -12.06131 -11.85958 -11.74894 -11.57003 -11.19614 -10.43975 -10.12512 -10.04238 -0.40361 0.10325 0.32992 0.67551 1.03280 1.29187 1.40417 1.48201 1.49345 2.01797 2.58173 2.67665 2.73968 2.80548 3.07562 3.09388 3.18798 3.40619 3.44278 3.51619 3.59616 3.69445 3.72274 3.83194 3.88459 3.93392 3.96409 4.14140 4.14554 4.20524 4.29124 4.37862 4.39821 4.45998 4.50864 4.52708 4.60624 4.64657 4.72992 4.77398 4.80127 4.83652 4.91412 4.98216 5.00590 5.05969 5.18789 5.19592 5.23469 5.38036 5.46067 5.82871 6.52817 6.54016 Molecular weight = 320.18amu Principal moments of inertia in cm(-1) A = 0.021080 B = 0.003462 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.940773 B = 8085.493193 C = 8337.942588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.097 4.097 3 H 0.128 0.872 4 C -0.005 4.005 5 N -0.337 5.337 6 H 0.418 0.582 7 C -0.057 4.057 8 C -0.084 4.084 9 C -0.102 4.102 10 O -0.550 6.550 11 Si 0.964 3.036 12 H -0.268 1.268 13 H -0.243 1.243 14 H -0.284 1.284 15 C 0.049 3.951 16 H 0.155 0.845 17 C -0.181 4.181 18 C -0.159 4.159 19 C 0.072 3.928 20 H 0.085 0.915 21 O -0.331 6.331 22 C 0.521 3.479 23 O -0.535 6.535 24 C -0.150 4.150 25 C -0.052 4.052 26 C -0.137 4.137 27 C -0.088 4.088 28 C -0.144 4.144 29 C -0.076 4.076 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.157 0.843 34 H 0.163 0.837 35 H 0.224 0.776 36 H 0.173 0.827 37 H 0.096 0.904 38 H 0.407 0.593 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.122 0.878 44 H 0.172 0.828 45 H 0.157 0.843 46 H 0.143 0.857 47 H 0.138 0.862 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.057 -1.389 -9.316 9.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.116 4.116 3 H 0.146 0.854 4 C -0.125 4.125 5 N 0.079 4.921 6 H 0.262 0.738 7 C -0.163 4.163 8 C -0.103 4.103 9 C -0.214 4.214 10 O -0.360 6.360 11 Si 0.789 3.211 12 H -0.193 1.193 13 H -0.167 1.167 14 H -0.209 1.209 15 C -0.052 4.052 16 H 0.173 0.827 17 C -0.238 4.238 18 C -0.197 4.197 19 C 0.017 3.983 20 H 0.103 0.897 21 O -0.248 6.248 22 C 0.367 3.633 23 O -0.425 6.425 24 C -0.151 4.151 25 C -0.070 4.070 26 C -0.155 4.155 27 C -0.106 4.106 28 C -0.162 4.162 29 C -0.094 4.094 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.175 0.825 34 H 0.181 0.819 35 H 0.240 0.760 36 H 0.190 0.810 37 H 0.113 0.887 38 H 0.258 0.742 39 H 0.099 0.901 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.113 0.887 43 H 0.140 0.860 44 H 0.189 0.811 45 H 0.174 0.826 46 H 0.161 0.839 47 H 0.156 0.844 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.772 -1.273 -9.843 10.305 hybrid contribution -1.041 0.101 1.157 1.559 sum -3.813 -1.172 -8.686 9.558 Atomic orbital electron populations 1.22253 0.91649 1.03741 1.06097 1.21680 0.97566 1.02363 0.89985 0.85436 1.24203 1.07302 0.77988 1.03017 1.43894 1.19997 1.15243 1.13012 0.73782 1.22751 1.04602 1.03268 0.85687 1.23259 0.91911 0.94798 1.00290 1.24760 0.92936 0.94581 1.09158 1.86549 1.24701 1.30253 1.94523 0.85313 0.80753 0.78612 0.76440 1.19271 1.16658 1.20932 1.23222 1.04523 0.94040 0.83386 0.82739 1.22362 1.03951 0.91402 1.06063 1.22611 1.05007 0.94447 0.97587 1.23157 0.76710 0.96979 1.01488 0.89652 1.86511 1.23855 1.83928 1.30521 1.21211 0.89052 0.71553 0.81486 1.90903 1.65621 1.47133 1.38890 1.19186 0.89095 1.11379 0.95461 1.21739 0.93488 0.93384 0.98403 1.21617 0.95289 1.00037 0.98564 1.21886 1.01686 0.94207 0.92805 1.21403 0.93207 1.01120 1.00420 1.21404 0.95526 0.95444 0.97045 0.91232 0.88008 0.90823 0.82536 0.81898 0.75956 0.80951 0.88709 0.74156 0.90108 0.88740 0.89443 0.88707 0.85956 0.81064 0.82583 0.83886 0.84432 0.85810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 8.64 8.57 71.98 0.62 9.26 16 2 C -0.10 4.68 2.94 -10.74 -0.03 4.65 16 3 H 0.13 -5.91 8.14 -2.39 -0.02 -5.93 16 4 C -0.01 0.30 4.48 86.33 0.39 0.69 16 5 N -0.34 18.68 0.25 -680.96 -0.17 18.51 16 6 H 0.42 -23.64 3.12 -89.70 -0.28 -23.91 16 7 C -0.06 3.17 6.60 83.38 0.55 3.72 16 8 C -0.08 4.17 8.26 25.65 0.21 4.38 16 9 C -0.10 4.75 2.53 71.24 0.18 4.93 16 10 O -0.55 22.53 12.86 -148.98 -1.92 20.61 16 11 Si 0.96 -35.49 28.48 68.60 1.95 -33.54 16 12 H -0.27 8.47 7.11 99.48 0.71 9.18 16 13 H -0.24 8.92 7.11 99.48 0.71 9.63 16 14 H -0.28 7.98 7.11 99.48 0.71 8.69 16 15 C 0.05 -2.49 1.97 44.95 0.09 -2.41 16 16 H 0.15 -8.07 7.71 -2.38 -0.02 -8.09 16 17 C -0.18 8.44 8.96 71.98 0.65 9.09 16 18 C -0.16 6.99 4.66 30.65 0.14 7.14 16 19 C 0.07 -2.87 2.28 30.68 0.07 -2.80 16 20 H 0.09 -2.82 7.17 -2.39 -0.02 -2.84 16 21 O -0.33 11.87 8.03 -56.19 -0.45 11.42 16 22 C 0.52 -12.78 7.87 70.33 0.55 -12.23 16 23 O -0.53 8.75 15.61 19.92 0.31 9.06 16 24 C -0.15 3.45 5.87 -20.10 -0.12 3.33 16 25 C -0.05 1.49 9.62 22.54 0.22 1.70 16 26 C -0.14 3.60 10.03 22.23 0.22 3.83 16 27 C -0.09 1.97 10.04 22.33 0.22 2.20 16 28 C -0.14 2.82 10.03 22.23 0.22 3.05 16 29 C -0.08 1.40 9.60 22.53 0.22 1.62 16 30 H 0.07 -2.89 8.14 -2.39 -0.02 -2.91 16 31 H 0.10 -5.10 8.14 -2.38 -0.02 -5.12 16 32 H 0.07 -3.82 5.01 -2.39 -0.01 -3.83 16 33 H 0.16 -8.96 7.71 -2.39 -0.02 -8.97 16 34 H 0.16 -9.74 8.11 -2.38 -0.02 -9.76 16 35 H 0.22 -13.32 8.06 -2.91 -0.02 -13.34 16 36 H 0.17 -8.38 8.04 -2.91 -0.02 -8.41 16 37 H 0.10 -5.23 5.42 -2.39 -0.01 -5.24 16 38 H 0.41 -18.58 8.74 -74.06 -0.65 -19.23 16 39 H 0.08 -3.71 8.14 -2.39 -0.02 -3.73 16 40 H 0.09 -4.47 7.04 -2.38 -0.02 -4.49 16 41 H 0.09 -3.70 8.14 -2.39 -0.02 -3.72 16 42 H 0.09 -3.57 8.14 -2.38 -0.02 -3.59 16 43 H 0.12 -5.76 6.63 -2.38 -0.02 -5.77 16 44 H 0.17 -6.32 7.61 -2.91 -0.02 -6.35 16 45 H 0.16 -4.80 8.06 -2.91 -0.02 -4.82 16 46 H 0.14 -3.57 8.06 -2.91 -0.02 -3.59 16 47 H 0.14 -2.90 8.06 -2.91 -0.02 -2.92 16 48 H 0.12 -2.04 7.65 -2.91 -0.02 -2.07 16 Total: 1.00 -67.85 371.92 4.91 -62.94 By element: Atomic # 1 Polarization: -131.93 SS G_CDS: 0.79 Total: -131.14 kcal Atomic # 6 Polarization: 37.74 SS G_CDS: 4.40 Total: 42.14 kcal Atomic # 7 Polarization: 18.68 SS G_CDS: -0.17 Total: 18.51 kcal Atomic # 8 Polarization: 43.15 SS G_CDS: -2.06 Total: 41.09 kcal Atomic # 14 Polarization: -35.49 SS G_CDS: 1.95 Total: -33.54 kcal Total: -67.85 4.91 -62.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254439687.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.703 kcal (2) G-P(sol) polarization free energy of solvation -67.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds