Wall clock time and date at job start Wed Mar 18 2020 00:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.49177 * 2 1 4 4 C 1.53188 * 109.49489 * 239.90656 * 2 1 3 5 5 N 1.46927 * 108.77442 * 185.41177 * 4 2 1 6 6 C 1.38916 * 120.63394 * 233.62900 * 5 4 2 7 7 C 1.31982 * 120.00171 * 188.06864 * 6 5 4 8 8 C 1.50698 * 120.00274 * 31.44110 * 7 6 5 9 9 O 1.42897 * 109.47639 * 242.94756 * 8 7 6 10 10 Si 1.86301 * 109.47076 * 122.94368 * 8 7 6 11 11 H 1.48499 * 109.47147 * 60.00256 * 10 8 7 12 12 H 1.48500 * 109.46902 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47229 * 300.00150 * 10 8 7 14 14 C 1.46922 * 118.73770 * 53.60756 * 5 4 2 15 15 H 1.09000 * 109.58824 * 186.60532 * 14 5 4 16 16 C 1.53001 * 109.70584 * 66.25094 * 14 5 4 17 17 C 1.53193 * 108.77665 * 306.39339 * 14 5 4 18 18 C 1.53036 * 109.49572 * 120.06581 * 2 1 3 19 19 H 1.08996 * 109.45953 * 61.30059 * 18 2 1 20 20 O 1.45196 * 109.46153 * 301.31948 * 18 2 1 21 21 C 1.34708 * 116.99820 * 149.99947 * 20 18 2 22 22 O 1.21474 * 120.00312 * 0.02562 * 21 20 18 23 23 C 1.47728 * 120.00155 * 180.02562 * 21 20 18 24 24 C 1.39625 * 120.14765 * 359.72584 * 23 21 20 25 25 C 1.37945 * 119.84580 * 179.74402 * 24 23 21 26 26 C 1.38367 * 120.15254 * 0.53309 * 25 24 23 27 27 C 1.38376 * 120.30066 * 359.74216 * 26 25 24 28 28 C 1.37948 * 120.14728 * 359.97438 * 27 26 25 29 29 H 1.08995 * 109.47094 * 299.93249 * 1 2 3 30 30 H 1.09003 * 109.46980 * 59.93110 * 1 2 3 31 31 H 1.09003 * 109.47163 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.58810 * 305.19908 * 4 2 1 33 33 H 1.08996 * 109.59262 * 65.62669 * 4 2 1 34 34 H 1.08002 * 119.99519 * 8.07117 * 6 5 4 35 35 H 1.08000 * 120.00178 * 211.44253 * 7 6 5 36 36 H 1.09002 * 109.46887 * 2.94391 * 8 7 6 37 37 H 0.96702 * 113.99482 * 299.99808 * 9 8 7 38 38 H 1.09000 * 109.46615 * 300.64040 * 16 14 5 39 39 H 1.08990 * 109.47157 * 60.63570 * 16 14 5 40 40 H 1.09000 * 109.47095 * 180.64131 * 16 14 5 41 41 H 1.09007 * 109.49595 * 294.68225 * 17 14 5 42 42 H 1.09003 * 109.50214 * 174.58782 * 17 14 5 43 43 H 1.07995 * 120.07698 * 359.97438 * 24 23 21 44 44 H 1.08001 * 119.92577 * 180.27316 * 25 24 23 45 45 H 1.07996 * 119.85075 * 179.76005 * 26 25 24 46 46 H 1.08002 * 119.92479 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.07012 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7241 -1.2494 5 7 3.5046 -0.8294 -1.1694 6 6 4.3050 -0.3725 -2.2088 7 6 5.6023 -0.6149 -2.1984 8 6 6.1282 -1.8759 -1.5626 9 8 6.9646 -1.5378 -0.4544 10 14 7.1160 -2.8378 -2.8155 11 1 8.2545 -2.0103 -3.2891 12 1 7.6337 -4.0807 -2.1891 13 1 6.2468 -3.1893 -3.9671 14 6 4.1053 -1.4266 0.0310 15 1 5.1896 -1.3245 -0.0135 16 6 3.7326 -2.9083 0.1117 17 6 3.5708 -0.6947 1.2661 18 6 2.0408 -0.7227 1.2485 19 1 1.6967 -1.7569 1.2357 20 8 1.5314 -0.0580 2.4346 21 6 1.3304 -0.8226 3.5253 22 8 1.5743 -2.0120 3.4868 23 6 0.8131 -0.2147 4.7684 24 6 0.5371 1.1531 4.8180 25 6 0.0493 1.7133 5.9804 26 6 -0.1560 0.9251 7.0989 27 6 0.1209 -0.4301 7.0585 28 6 0.6036 -1.0043 5.9008 29 1 -0.3633 0.5128 0.8905 30 1 -0.3633 0.5149 -0.8894 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6052 -1.7219 -1.2976 33 1 1.7638 -0.1585 -2.1389 34 1 3.8656 0.1811 -3.0255 35 1 6.2871 0.0905 -2.6454 36 1 5.2925 -2.4833 -1.2149 37 1 7.7304 -0.9965 -0.6905 38 1 2.6479 -3.0085 0.1511 39 1 4.1136 -3.4272 -0.7678 40 1 4.1706 -3.3448 1.0093 41 1 3.9159 0.3393 1.2539 42 1 3.9334 -1.1891 2.1673 43 1 0.7015 1.7703 3.9472 44 1 -0.1689 2.7703 6.0188 45 1 -0.5344 1.3695 8.0076 46 1 -0.0412 -1.0396 7.9352 47 1 0.8189 -2.0622 5.8704 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254439687.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 18 2020 00:06:10 Heat of formation + Delta-G solvation = -53.160367 kcal Electronic energy + Delta-G solvation = -28063.834761 eV Core-core repulsion = 24293.235433 eV Total energy + Delta-G solvation = -3770.599328 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.90777 -40.81806 -39.65292 -38.19016 -37.13251 -35.33280 -34.25747 -32.49487 -32.01088 -31.45062 -29.72897 -27.07880 -26.21209 -25.66376 -24.26423 -23.52771 -22.71505 -21.76034 -21.35084 -19.95408 -19.05950 -18.27701 -17.64540 -17.48128 -17.09227 -16.94927 -16.44291 -16.10789 -15.79895 -15.64302 -15.26719 -15.13570 -15.05217 -14.78633 -14.59308 -14.47553 -14.22892 -13.96226 -13.78577 -13.68951 -13.38940 -13.21291 -12.90329 -12.72593 -12.60948 -12.53323 -12.29177 -12.23670 -12.14222 -12.01779 -11.92362 -11.66398 -11.54615 -11.32558 -10.86776 -10.74519 -10.20694 -10.08975 -10.05318 -8.11884 -0.31261 0.31618 1.08836 1.49909 1.59317 1.60026 1.62037 1.77961 2.13433 2.25858 2.77600 3.41951 3.51748 3.55439 3.72615 3.80632 3.84085 3.90237 3.99252 4.05661 4.07809 4.11608 4.20406 4.31487 4.33831 4.37939 4.42834 4.45099 4.48033 4.60979 4.63969 4.72702 4.75110 4.81185 4.91682 4.92138 4.94250 5.04501 5.06144 5.16768 5.20782 5.24368 5.28936 5.33115 5.39812 5.44599 5.55669 5.61452 5.79514 6.40781 6.65267 6.74374 6.81014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 H 0.088 0.912 4 C 0.126 3.874 5 N -0.619 5.619 6 C 0.168 3.832 7 C -0.359 4.359 8 C -0.087 4.087 9 O -0.551 6.551 10 Si 0.948 3.052 11 H -0.257 1.257 12 H -0.259 1.259 13 H -0.258 1.258 14 C 0.115 3.885 15 H 0.151 0.849 16 C -0.175 4.175 17 C -0.140 4.140 18 C 0.095 3.905 19 H 0.089 0.911 20 O -0.345 6.345 21 C 0.509 3.491 22 O -0.503 6.503 23 C -0.128 4.128 24 C -0.062 4.062 25 C -0.134 4.134 26 C -0.083 4.083 27 C -0.131 4.131 28 C -0.056 4.056 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.132 0.868 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.374 0.626 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.138 0.862 44 H 0.133 0.867 45 H 0.131 0.869 46 H 0.134 0.866 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.161 3.347 -0.134 3.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 H 0.106 0.894 4 C 0.002 3.998 5 N -0.329 5.329 6 C 0.047 3.953 7 C -0.388 4.388 8 C -0.197 4.197 9 O -0.358 6.358 10 Si 0.771 3.229 11 H -0.180 1.180 12 H -0.183 1.183 13 H -0.181 1.181 14 C 0.012 3.988 15 H 0.168 0.832 16 C -0.232 4.232 17 C -0.179 4.179 18 C 0.040 3.960 19 H 0.107 0.893 20 O -0.262 6.262 21 C 0.353 3.647 22 O -0.392 6.392 23 C -0.129 4.129 24 C -0.080 4.080 25 C -0.152 4.152 26 C -0.101 4.101 27 C -0.149 4.149 28 C -0.074 4.074 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.150 0.850 35 H 0.142 0.858 36 H 0.137 0.863 37 H 0.222 0.778 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.156 0.844 44 H 0.151 0.849 45 H 0.149 0.851 46 H 0.152 0.848 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.165 2.131 -0.397 3.064 hybrid contribution 0.077 0.443 -0.109 0.462 sum -2.088 2.574 -0.506 3.353 Atomic orbital electron populations 1.21784 0.93626 1.02369 1.02865 1.21631 0.96727 1.01015 0.92577 0.89358 1.21632 0.80672 1.00212 0.97291 1.47289 1.04428 1.65593 1.15562 1.21064 0.90943 0.92835 0.90459 1.22430 0.95512 1.02301 1.18530 1.25419 0.98733 1.00317 0.95182 1.86369 1.40592 1.74628 1.34219 0.85748 0.79679 0.79429 0.78065 1.18021 1.18311 1.18141 1.22113 1.02669 0.91314 0.82677 0.83237 1.22360 1.02118 0.96119 1.02630 1.22334 0.93801 1.02536 0.99206 1.22890 0.93982 0.97496 0.81604 0.89312 1.86567 1.76361 1.42379 1.20914 1.21198 0.74616 0.84922 0.83922 1.90838 1.48202 1.16256 1.83933 1.19154 1.07011 0.94744 0.92008 1.21508 0.94409 0.93490 0.98642 1.21234 1.00338 1.00675 0.92910 1.21533 0.96105 0.93922 0.98569 1.21199 1.00206 0.95419 0.98108 1.21330 0.94483 1.00457 0.91101 0.91528 0.91795 0.92532 0.91911 0.89384 0.85039 0.85817 0.86307 0.77750 0.92264 0.91772 0.90861 0.90362 0.90290 0.84428 0.84950 0.85132 0.84809 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.17 9.04 37.16 0.34 0.51 16 2 C -0.10 0.07 2.63 -90.50 -0.24 -0.17 16 3 H 0.09 -0.02 8.14 -51.93 -0.42 -0.45 16 4 C 0.13 -0.18 5.40 -3.71 -0.02 -0.20 16 5 N -0.62 0.13 2.74 -166.19 -0.45 -0.33 16 6 C 0.17 -0.09 10.24 -16.25 -0.17 -0.26 16 7 C -0.36 0.05 7.79 -36.22 -0.28 -0.23 16 8 C -0.09 -0.03 1.62 36.00 0.06 0.02 16 9 O -0.55 -0.33 11.10 -35.23 -0.39 -0.72 16 10 Si 0.95 0.64 28.48 -169.99 -4.84 -4.21 16 11 H -0.26 -0.29 7.11 56.52 0.40 0.12 16 12 H -0.26 -0.59 7.11 56.52 0.40 -0.19 16 13 H -0.26 -0.46 7.11 56.52 0.40 -0.06 16 14 C 0.11 0.10 2.22 -67.60 -0.15 -0.05 16 15 H 0.15 0.24 3.02 -51.93 -0.16 0.08 16 16 C -0.17 -0.14 8.41 37.16 0.31 0.17 16 17 C -0.14 -0.21 5.19 -26.61 -0.14 -0.34 16 18 C 0.09 0.12 1.66 -26.69 -0.04 0.08 16 19 H 0.09 0.21 5.53 -51.93 -0.29 -0.07 16 20 O -0.35 -0.78 8.41 -40.51 -0.34 -1.12 16 21 C 0.51 1.79 7.87 34.61 0.27 2.06 16 22 O -0.50 -2.91 15.61 -19.25 -0.30 -3.21 16 23 C -0.13 -0.27 5.87 -104.98 -0.62 -0.89 16 24 C -0.06 -0.03 9.62 -39.17 -0.38 -0.41 16 25 C -0.13 0.09 10.03 -39.64 -0.40 -0.31 16 26 C -0.08 0.07 10.04 -39.48 -0.40 -0.32 16 27 C -0.13 0.03 10.03 -39.64 -0.40 -0.36 16 28 C -0.06 -0.08 9.60 -39.17 -0.38 -0.46 16 29 H 0.07 -0.02 7.64 -51.93 -0.40 -0.42 16 30 H 0.06 -0.14 8.14 -51.93 -0.42 -0.57 16 31 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 32 H 0.06 -0.08 7.49 -51.93 -0.39 -0.47 16 33 H 0.09 -0.26 7.87 -51.93 -0.41 -0.67 16 34 H 0.13 -0.34 7.96 -52.49 -0.42 -0.75 16 35 H 0.12 -0.12 8.06 -52.49 -0.42 -0.54 16 36 H 0.12 0.09 2.69 -51.93 -0.14 -0.05 16 37 H 0.37 -0.96 8.70 45.56 0.40 -0.56 16 38 H 0.06 0.06 5.74 -51.93 -0.30 -0.24 16 39 H 0.06 0.02 6.38 -51.93 -0.33 -0.31 16 40 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 41 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 42 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.14 -0.10 7.61 -52.49 -0.40 -0.50 16 44 H 0.13 -0.36 8.06 -52.49 -0.42 -0.79 16 45 H 0.13 -0.40 8.06 -52.49 -0.42 -0.82 16 46 H 0.13 -0.30 8.06 -52.49 -0.42 -0.72 16 47 H 0.14 0.17 7.65 -52.49 -0.40 -0.23 16 LS Contribution 364.29 15.07 5.49 5.49 Total: 0.00 -5.03 364.29 -9.71 -14.74 By element: Atomic # 1 Polarization: -3.24 SS G_CDS: -6.25 Total: -9.50 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -2.62 Total: -1.15 kcal Atomic # 7 Polarization: 0.13 SS G_CDS: -0.45 Total: -0.33 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: -1.03 Total: -5.05 kcal Atomic # 14 Polarization: 0.64 SS G_CDS: -4.84 Total: -4.21 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -5.03 -9.71 -14.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254439687.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.418 kcal (2) G-P(sol) polarization free energy of solvation -5.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds