Wall clock time and date at job start Wed Mar 18 2020 00:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.49177 * 2 1 4 4 C 1.53188 * 109.49489 * 239.90656 * 2 1 3 5 5 N 1.46927 * 108.77442 * 185.41177 * 4 2 1 6 6 C 1.38916 * 120.63394 * 233.62900 * 5 4 2 7 7 C 1.31982 * 120.00171 * 188.06864 * 6 5 4 8 8 C 1.50698 * 120.00274 * 31.44110 * 7 6 5 9 9 O 1.42897 * 109.47639 * 242.94756 * 8 7 6 10 10 Si 1.86301 * 109.47076 * 122.94368 * 8 7 6 11 11 H 1.48499 * 109.47147 * 60.00256 * 10 8 7 12 12 H 1.48500 * 109.46902 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47229 * 300.00150 * 10 8 7 14 14 C 1.46922 * 118.73770 * 53.60756 * 5 4 2 15 15 H 1.09000 * 109.58824 * 186.60532 * 14 5 4 16 16 C 1.53001 * 109.70584 * 66.25094 * 14 5 4 17 17 C 1.53193 * 108.77665 * 306.39339 * 14 5 4 18 18 C 1.53036 * 109.49572 * 120.06581 * 2 1 3 19 19 H 1.08996 * 109.45953 * 61.30059 * 18 2 1 20 20 O 1.45196 * 109.46153 * 301.31948 * 18 2 1 21 21 C 1.34708 * 116.99820 * 149.99947 * 20 18 2 22 22 O 1.21474 * 120.00312 * 0.02562 * 21 20 18 23 23 C 1.47728 * 120.00155 * 180.02562 * 21 20 18 24 24 C 1.39625 * 120.14765 * 359.72584 * 23 21 20 25 25 C 1.37945 * 119.84580 * 179.74402 * 24 23 21 26 26 C 1.38367 * 120.15254 * 0.53309 * 25 24 23 27 27 C 1.38376 * 120.30066 * 359.74216 * 26 25 24 28 28 C 1.37948 * 120.14728 * 359.97438 * 27 26 25 29 29 H 1.08995 * 109.47094 * 299.93249 * 1 2 3 30 30 H 1.09003 * 109.46980 * 59.93110 * 1 2 3 31 31 H 1.09003 * 109.47163 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.58810 * 305.19908 * 4 2 1 33 33 H 1.08996 * 109.59262 * 65.62669 * 4 2 1 34 34 H 1.08002 * 119.99519 * 8.07117 * 6 5 4 35 35 H 1.08000 * 120.00178 * 211.44253 * 7 6 5 36 36 H 1.09002 * 109.46887 * 2.94391 * 8 7 6 37 37 H 0.96702 * 113.99482 * 299.99808 * 9 8 7 38 38 H 1.09000 * 109.46615 * 300.64040 * 16 14 5 39 39 H 1.08990 * 109.47157 * 60.63570 * 16 14 5 40 40 H 1.09000 * 109.47095 * 180.64131 * 16 14 5 41 41 H 1.09007 * 109.49595 * 294.68225 * 17 14 5 42 42 H 1.09003 * 109.50214 * 174.58782 * 17 14 5 43 43 H 1.07995 * 120.07698 * 359.97438 * 24 23 21 44 44 H 1.08001 * 119.92577 * 180.27316 * 25 24 23 45 45 H 1.07996 * 119.85075 * 179.76005 * 26 25 24 46 46 H 1.08002 * 119.92479 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.07012 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7241 -1.2494 5 7 3.5046 -0.8294 -1.1694 6 6 4.3050 -0.3725 -2.2088 7 6 5.6023 -0.6149 -2.1984 8 6 6.1282 -1.8759 -1.5626 9 8 6.9646 -1.5378 -0.4544 10 14 7.1160 -2.8378 -2.8155 11 1 8.2545 -2.0103 -3.2891 12 1 7.6337 -4.0807 -2.1891 13 1 6.2468 -3.1893 -3.9671 14 6 4.1053 -1.4266 0.0310 15 1 5.1896 -1.3245 -0.0135 16 6 3.7326 -2.9083 0.1117 17 6 3.5708 -0.6947 1.2661 18 6 2.0408 -0.7227 1.2485 19 1 1.6967 -1.7569 1.2357 20 8 1.5314 -0.0580 2.4346 21 6 1.3304 -0.8226 3.5253 22 8 1.5743 -2.0120 3.4868 23 6 0.8131 -0.2147 4.7684 24 6 0.5371 1.1531 4.8180 25 6 0.0493 1.7133 5.9804 26 6 -0.1560 0.9251 7.0989 27 6 0.1209 -0.4301 7.0585 28 6 0.6036 -1.0043 5.9008 29 1 -0.3633 0.5128 0.8905 30 1 -0.3633 0.5149 -0.8894 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6052 -1.7219 -1.2976 33 1 1.7638 -0.1585 -2.1389 34 1 3.8656 0.1811 -3.0255 35 1 6.2871 0.0905 -2.6454 36 1 5.2925 -2.4833 -1.2149 37 1 7.7304 -0.9965 -0.6905 38 1 2.6479 -3.0085 0.1511 39 1 4.1136 -3.4272 -0.7678 40 1 4.1706 -3.3448 1.0093 41 1 3.9159 0.3393 1.2539 42 1 3.9334 -1.1891 2.1673 43 1 0.7015 1.7703 3.9472 44 1 -0.1689 2.7703 6.0188 45 1 -0.5344 1.3695 8.0076 46 1 -0.0412 -1.0396 7.9352 47 1 0.8189 -2.0622 5.8704 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000254439687.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 18 2020 00:06:09 Heat of formation + Delta-G solvation = -44.808364 kcal Electronic energy + Delta-G solvation = -28063.472591 eV Core-core repulsion = 24293.235433 eV Total energy + Delta-G solvation = -3770.237158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.06283 -40.87493 -39.67829 -38.28472 -37.28246 -35.35297 -34.29347 -32.51718 -31.99551 -31.43123 -29.81116 -27.03181 -26.30605 -25.70532 -24.30244 -23.51263 -22.73638 -21.88729 -21.34191 -19.99524 -19.17733 -18.41261 -17.65055 -17.55227 -17.15559 -16.98575 -16.53955 -16.12436 -15.82219 -15.65812 -15.31308 -15.17544 -15.10006 -14.83758 -14.63317 -14.45437 -14.28555 -13.97805 -13.79868 -13.71236 -13.48846 -13.16233 -12.95206 -12.72335 -12.66808 -12.55329 -12.36722 -12.33909 -12.12130 -12.06733 -12.04631 -11.77940 -11.66936 -11.42959 -10.96097 -10.74376 -10.23172 -10.10837 -10.04142 -8.09047 -0.38685 0.33210 1.10196 1.42701 1.43681 1.48290 1.51590 1.70912 2.05375 2.27870 2.75531 3.37943 3.45992 3.50689 3.74312 3.81418 3.83794 3.88793 3.94651 4.01960 4.14972 4.17049 4.24167 4.29467 4.34845 4.38672 4.40710 4.46888 4.52732 4.57898 4.61790 4.74183 4.75731 4.79224 4.87760 4.91891 4.97236 4.99653 5.05300 5.13042 5.21029 5.22446 5.25999 5.33912 5.43115 5.43676 5.46279 5.64161 5.84430 6.44078 6.58013 6.70592 6.87733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.089 0.911 4 C 0.125 3.875 5 N -0.621 5.621 6 C 0.167 3.833 7 C -0.370 4.370 8 C -0.084 4.084 9 O -0.565 6.565 10 Si 0.983 3.017 11 H -0.259 1.259 12 H -0.286 1.286 13 H -0.271 1.271 14 C 0.119 3.881 15 H 0.145 0.855 16 C -0.172 4.172 17 C -0.135 4.135 18 C 0.093 3.907 19 H 0.074 0.926 20 O -0.343 6.343 21 C 0.507 3.493 22 O -0.537 6.537 23 C -0.151 4.151 24 C -0.066 4.066 25 C -0.134 4.134 26 C -0.080 4.080 27 C -0.135 4.135 28 C -0.072 4.072 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.113 0.887 34 H 0.158 0.842 35 H 0.134 0.866 36 H 0.112 0.888 37 H 0.387 0.613 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.146 0.854 44 H 0.157 0.843 45 H 0.158 0.842 46 H 0.153 0.847 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.972 5.145 -0.384 5.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.108 0.892 4 C 0.002 3.998 5 N -0.331 5.331 6 C 0.046 3.954 7 C -0.399 4.399 8 C -0.194 4.194 9 O -0.374 6.374 10 Si 0.809 3.191 11 H -0.183 1.183 12 H -0.212 1.212 13 H -0.196 1.196 14 C 0.015 3.985 15 H 0.162 0.838 16 C -0.230 4.230 17 C -0.173 4.173 18 C 0.038 3.962 19 H 0.092 0.908 20 O -0.259 6.259 21 C 0.354 3.646 22 O -0.428 6.428 23 C -0.152 4.152 24 C -0.084 4.084 25 C -0.152 4.152 26 C -0.098 4.098 27 C -0.152 4.152 28 C -0.091 4.091 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.131 0.869 34 H 0.175 0.825 35 H 0.152 0.848 36 H 0.130 0.870 37 H 0.237 0.763 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.163 0.837 44 H 0.175 0.825 45 H 0.175 0.825 46 H 0.171 0.829 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.972 3.958 -0.659 4.993 hybrid contribution 0.336 -0.110 0.020 0.354 sum -2.636 3.848 -0.639 4.708 Atomic orbital electron populations 1.21756 0.93099 1.02193 1.03248 1.21608 0.97072 1.00750 0.91718 0.89246 1.21746 0.79850 1.00500 0.97701 1.47320 1.05027 1.65423 1.15284 1.21447 0.90858 0.92574 0.90544 1.22527 0.96063 1.02331 1.18951 1.25353 0.98437 1.00780 0.94818 1.86343 1.41336 1.75043 1.34649 0.85257 0.78903 0.77870 0.77069 1.18326 1.21182 1.19604 1.21971 1.02369 0.91112 0.83024 0.83795 1.22334 1.01851 0.96409 1.02422 1.22260 0.94004 1.02149 0.98909 1.22997 0.93838 0.97144 0.82183 0.90799 1.86571 1.76134 1.42242 1.20994 1.21587 0.73890 0.84641 0.84517 1.90809 1.49923 1.17596 1.84497 1.19250 1.08601 0.95776 0.91598 1.21665 0.94331 0.92759 0.99655 1.21573 0.99358 1.01952 0.92319 1.21913 0.94885 0.93528 0.99489 1.21471 0.99547 0.96233 0.97971 1.21420 0.95498 1.00262 0.91877 0.92506 0.89997 0.93003 0.92033 0.86890 0.82506 0.84845 0.87037 0.76254 0.92525 0.91210 0.91832 0.90579 0.92162 0.83655 0.82507 0.82451 0.82928 0.85370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.36 9.04 71.98 0.65 1.01 16 2 C -0.09 0.12 2.63 -10.72 -0.03 0.09 16 3 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 4 C 0.13 -0.44 5.40 86.36 0.47 0.03 16 5 N -0.62 0.43 2.74 -679.70 -1.86 -1.43 16 6 C 0.17 -0.37 10.24 82.67 0.85 0.48 16 7 C -0.37 0.32 7.79 24.79 0.19 0.51 16 8 C -0.08 -0.10 1.62 71.24 0.12 0.02 16 9 O -0.56 -1.05 11.10 -148.98 -1.65 -2.70 16 10 Si 0.98 1.93 28.48 68.60 1.95 3.89 16 11 H -0.26 -0.58 7.11 99.48 0.71 0.13 16 12 H -0.29 -1.76 7.11 99.48 0.71 -1.06 16 13 H -0.27 -1.11 7.11 99.48 0.71 -0.40 16 14 C 0.12 0.34 2.22 44.98 0.10 0.44 16 15 H 0.15 0.62 3.02 -2.39 -0.01 0.61 16 16 C -0.17 -0.58 8.41 71.98 0.61 0.02 16 17 C -0.13 -0.64 5.19 30.67 0.16 -0.48 16 18 C 0.09 0.38 1.66 30.62 0.05 0.44 16 19 H 0.07 0.54 5.53 -2.39 -0.01 0.53 16 20 O -0.34 -2.17 8.41 -56.18 -0.47 -2.64 16 21 C 0.51 4.82 7.87 70.33 0.55 5.37 16 22 O -0.54 -7.95 15.61 19.92 0.31 -7.64 16 23 C -0.15 -0.89 5.87 -20.10 -0.12 -1.01 16 24 C -0.07 -0.08 9.62 22.54 0.22 0.13 16 25 C -0.13 0.34 10.03 22.23 0.22 0.56 16 26 C -0.08 0.25 10.04 22.33 0.22 0.48 16 27 C -0.13 0.09 10.03 22.23 0.22 0.31 16 28 C -0.07 -0.32 9.60 22.54 0.22 -0.10 16 29 H 0.06 -0.01 7.64 -2.39 -0.02 -0.03 16 30 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 31 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.06 -0.18 7.49 -2.39 -0.02 -0.19 16 33 H 0.11 -0.92 7.87 -2.39 -0.02 -0.94 16 34 H 0.16 -1.18 7.96 -2.91 -0.02 -1.20 16 35 H 0.13 -0.40 8.06 -2.91 -0.02 -0.42 16 36 H 0.11 0.27 2.69 -2.39 -0.01 0.26 16 37 H 0.39 -1.86 8.70 -74.06 -0.64 -2.51 16 38 H 0.06 0.21 5.74 -2.39 -0.01 0.20 16 39 H 0.07 0.14 6.38 -2.39 -0.02 0.13 16 40 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.08 0.37 8.14 -2.38 -0.02 0.35 16 42 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.15 -0.17 7.61 -2.91 -0.02 -0.19 16 44 H 0.16 -1.20 8.06 -2.91 -0.02 -1.23 16 45 H 0.16 -1.36 8.06 -2.91 -0.02 -1.39 16 46 H 0.15 -0.78 8.06 -2.91 -0.02 -0.81 16 47 H 0.13 0.68 7.65 -2.91 -0.02 0.66 16 Total: 0.00 -13.72 364.29 4.06 -9.66 By element: Atomic # 1 Polarization: -8.50 SS G_CDS: 1.09 Total: -7.42 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 4.70 Total: 8.29 kcal Atomic # 7 Polarization: 0.43 SS G_CDS: -1.86 Total: -1.43 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -1.82 Total: -12.98 kcal Atomic # 14 Polarization: 1.93 SS G_CDS: 1.95 Total: 3.89 kcal Total: -13.72 4.06 -9.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254439687.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.151 kcal (2) G-P(sol) polarization free energy of solvation -13.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds