Wall clock time and date at job start Tue Mar 17 2020 23:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 110.43971 * 2 1 4 4 O 1.44313 * 110.39087 * 122.35927 * 2 1 3 5 Xx 1.43475 * 104.65841 * 95.12931 * 4 2 1 6 5 C 1.56993 * 127.55357 * 219.56485 * 5 4 2 7 6 C 1.33554 * 124.64817 * 180.02562 * 6 5 4 8 7 C 1.40389 * 115.61059 * 180.02562 * 7 6 5 9 8 C 1.41554 * 128.87956 * 179.97438 * 8 7 6 10 9 C 1.35935 * 120.49231 * 179.97438 * 9 8 7 11 10 C 1.50704 * 119.64722 * 180.02562 * 10 9 8 12 11 O 1.42891 * 109.47217 * 299.99946 * 11 10 9 13 12 Si 1.86302 * 109.46857 * 179.97438 * 11 10 9 14 13 H 1.48504 * 109.46923 * 60.00337 * 13 11 10 15 14 H 1.48507 * 109.46904 * 179.97438 * 13 11 10 16 15 H 1.48488 * 109.47592 * 300.00181 * 13 11 10 17 16 C 1.38946 * 120.70509 * 359.97438 * 10 9 8 18 17 C 1.37425 * 120.19087 * 0.02630 * 17 10 9 19 18 C 1.39861 * 120.17214 * 359.97438 * 18 17 10 20 19 S 1.75486 * 124.65089 * 359.70044 * 6 5 4 21 20 O 1.43470 * 104.88998 * 39.58869 * 5 4 2 22 21 C 1.44315 * 104.66052 * 320.40882 * 21 5 4 23 22 C 1.53002 * 110.39090 * 142.48441 * 22 21 5 24 23 C 1.52988 * 110.39369 * 264.75677 * 22 21 5 25 24 H 1.09002 * 109.46974 * 299.09238 * 1 2 3 26 25 H 1.09005 * 109.46667 * 59.09230 * 1 2 3 27 26 H 1.08990 * 109.46968 * 179.09056 * 1 2 3 28 27 H 1.09001 * 109.46989 * 180.90662 * 3 2 1 29 28 H 1.09001 * 109.46681 * 300.90945 * 3 2 1 30 29 H 1.09002 * 109.46660 * 60.90443 * 3 2 1 31 30 H 1.08001 * 122.19902 * 0.02562 * 7 6 5 32 31 H 1.08007 * 119.75301 * 359.97438 * 9 8 7 33 32 H 1.09006 * 109.47222 * 59.99824 * 11 10 9 34 33 H 0.96706 * 113.99978 * 299.99689 * 12 11 10 35 34 H 1.07998 * 119.90469 * 180.02562 * 17 10 9 36 35 H 1.08001 * 119.91316 * 179.97438 * 18 17 10 37 36 H 1.08998 * 109.47520 * 61.44947 * 23 22 21 38 37 H 1.09002 * 109.47500 * 181.45770 * 23 22 21 39 38 H 1.09009 * 109.46879 * 301.45289 * 23 22 21 40 39 H 1.09001 * 109.47433 * 58.54611 * 24 22 21 41 40 H 1.08996 * 109.47467 * 178.54887 * 24 22 21 42 41 H 1.09000 * 109.47292 * 298.54805 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0644 1.4337 0.0000 4 8 2.0329 -0.7240 1.1426 5 6 2.0006 -3.4083 1.3927 6 6 2.2506 -4.6160 0.8804 7 6 1.9302 -5.7042 1.7075 8 6 2.0763 -7.0886 1.4508 9 6 1.7072 -8.0058 2.3837 10 6 1.8715 -9.4749 2.0905 11 8 1.1015 -9.8196 0.9373 12 14 1.2821 -10.4694 3.5515 13 1 -0.1505 -10.1728 3.8066 14 1 1.4435 -11.9171 3.2625 15 1 2.0827 -10.1111 4.7497 16 6 1.1809 -7.6033 3.6050 17 6 1.0266 -6.2666 3.8842 18 6 1.3991 -5.3039 2.9406 19 16 1.3301 -3.5466 3.0085 20 8 2.8255 -1.8653 -0.6585 21 6 2.0674 -0.7738 -1.2212 22 6 2.9732 0.1250 -2.0654 23 6 0.9107 -1.3086 -2.0676 24 1 -0.3633 0.4997 0.8980 25 1 -0.3633 0.5279 -0.8818 26 1 -0.3633 -1.0275 -0.0163 27 1 3.1541 1.4153 -0.0163 28 1 1.6966 1.9585 -0.8817 29 1 1.7230 1.9486 0.8980 30 1 2.6715 -4.7471 -0.1055 31 1 2.4841 -7.4186 0.5067 32 1 2.9231 -9.6927 1.9036 33 1 0.1539 -9.6520 1.0326 34 1 0.8923 -8.3431 4.3370 35 1 0.6167 -5.9588 4.8348 36 1 3.3903 -0.4520 -2.8907 37 1 2.3918 0.9576 -2.4614 38 1 3.7830 0.5098 -1.4453 39 1 0.2669 -1.9342 -1.4493 40 1 0.3336 -0.4731 -2.4637 41 1 1.3074 -1.8998 -2.8930 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000196097311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 23:08:09 Heat of formation + Delta-G solvation = 142.532292 kcal Electronic energy + Delta-G solvation = -22916.803441 eV Core-core repulsion = 19478.461499 eV Total energy + Delta-G solvation = -3438.341942 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.112 amu Computer time = 3.59 seconds Orbital eigenvalues (eV) -41.09055 -39.86399 -38.16627 -36.06742 -34.65464 -32.48909 -32.44860 -30.34269 -30.25571 -30.20275 -27.00031 -26.80135 -24.06393 -23.60497 -23.53020 -20.85092 -19.12968 -19.03701 -18.02028 -17.24227 -17.09691 -16.72497 -16.44088 -16.30426 -15.86150 -15.61605 -15.28999 -14.80935 -14.75865 -14.66533 -14.57692 -14.09137 -14.04428 -13.74164 -13.38136 -13.36500 -13.17574 -12.81999 -12.65280 -12.61471 -12.41114 -12.38401 -12.31650 -12.17675 -12.09603 -11.88931 -11.61634 -10.88157 -10.80225 -10.50409 -10.42710 -9.69757 -9.61250 -8.88326 -6.13927 -2.92754 -0.50940 0.01887 0.36822 0.79801 1.07128 1.13483 1.37621 1.45053 1.85504 2.46351 3.06003 3.31271 3.48587 3.51949 3.55250 3.64556 3.68237 3.70366 3.89282 4.03555 4.12426 4.14494 4.24987 4.30628 4.33718 4.45138 4.48322 4.51785 4.53487 4.61330 4.71902 4.78217 4.79004 4.80837 4.81872 4.90772 5.03801 5.07233 5.08008 5.15673 5.24219 5.31729 5.63413 5.64823 6.46620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.153 3.847 3 C -0.147 4.147 4 O -0.410 6.410 5 C 0.092 3.908 6 C -0.179 4.179 7 C -0.045 4.045 8 C -0.044 4.044 9 C -0.114 4.114 10 C -0.081 4.081 11 O -0.537 6.537 12 Si 0.950 3.050 13 H -0.250 1.250 14 H -0.252 1.252 15 H -0.249 1.249 16 C -0.109 4.109 17 C -0.066 4.066 18 C -0.169 4.169 19 S 0.163 5.837 20 O -0.419 6.419 21 C 0.156 3.844 22 C -0.148 4.148 23 C -0.156 4.156 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.170 0.830 31 H 0.138 0.862 32 H 0.121 0.879 33 H 0.378 0.622 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.669 1.203 -1.274 4.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.084 3.916 3 C -0.204 4.204 4 O -0.338 6.338 5 C -0.025 4.025 6 C -0.210 4.210 7 C -0.053 4.053 8 C -0.064 4.064 9 C -0.116 4.116 10 C -0.192 4.192 11 O -0.342 6.342 12 Si 0.773 3.227 13 H -0.173 1.173 14 H -0.176 1.176 15 H -0.173 1.173 16 C -0.129 4.129 17 C -0.088 4.088 18 C -0.284 4.284 19 S 0.426 5.574 20 O -0.348 6.348 21 C 0.087 3.913 22 C -0.205 4.205 23 C -0.213 4.213 24 H 0.101 0.899 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.188 0.812 31 H 0.156 0.844 32 H 0.139 0.861 33 H 0.225 0.775 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.487 1.148 0.745 3.746 hybrid contribution 0.270 -0.132 -1.493 1.523 sum -3.218 1.016 -0.748 3.456 Atomic orbital electron populations 1.22620 0.91034 1.04130 1.03572 1.24428 0.93076 0.89326 0.84764 1.22565 1.03425 0.90752 1.03642 1.95200 1.77575 1.43705 1.17317 1.39455 0.97891 0.79356 0.85796 1.20776 1.07942 0.87943 1.04292 1.17892 1.02389 0.92808 0.92204 1.20601 0.97306 0.88912 0.99613 1.19852 1.00768 0.96495 0.94507 1.25027 1.01088 0.94022 0.99020 1.86530 1.22915 1.87170 1.37616 0.85665 0.81018 0.79746 0.76285 1.17340 1.17622 1.17272 1.20977 0.99720 0.95590 0.96651 1.20389 0.99301 0.91044 0.98059 1.23531 1.07706 0.98016 0.99099 1.85687 1.63899 0.96474 1.11374 1.95192 1.66690 1.42448 1.30457 1.24384 0.93311 0.90391 0.83221 1.22569 0.99514 0.99554 0.98842 1.22614 0.97457 1.02106 0.99121 0.89909 0.90552 0.90555 0.90294 0.90413 0.89806 0.81248 0.84433 0.86104 0.77525 0.85130 0.84626 0.89864 0.90445 0.90319 0.90584 0.90561 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 69. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.11 7.80 37.16 0.29 0.40 16 2 C 0.15 0.28 1.57 -89.97 -0.14 0.14 16 3 C -0.15 0.09 7.79 37.16 0.29 0.38 16 4 O -0.41 -2.62 14.24 -59.50 -0.85 -3.47 16 5 C 0.09 0.41 11.42 29.09 0.33 0.74 16 6 C -0.18 -0.57 10.19 -40.41 -0.41 -0.98 16 7 C -0.04 -0.11 5.87 -107.12 -0.63 -0.74 16 8 C -0.04 -0.05 9.54 -39.14 -0.37 -0.42 16 9 C -0.11 -0.01 5.35 -105.18 -0.56 -0.57 16 10 C -0.08 0.09 2.80 36.01 0.10 0.19 16 11 O -0.54 0.19 12.75 -35.23 -0.45 -0.26 16 12 Si 0.95 -1.25 25.03 -169.99 -4.26 -5.51 16 13 H -0.25 0.32 7.11 56.52 0.40 0.72 16 14 H -0.25 -0.08 7.11 56.52 0.40 0.33 16 15 H -0.25 0.20 7.11 56.52 0.40 0.60 16 16 C -0.11 0.01 8.64 -39.62 -0.34 -0.33 16 17 C -0.07 -0.04 10.07 -39.27 -0.40 -0.43 16 18 C -0.17 -0.37 6.50 -38.27 -0.25 -0.62 16 19 S 0.16 0.43 23.28 -107.50 -2.50 -2.07 16 20 O -0.42 -2.72 14.24 -59.50 -0.85 -3.56 16 21 C 0.16 0.29 1.57 -89.98 -0.14 0.15 16 22 C -0.15 0.08 7.79 37.16 0.29 0.37 16 23 C -0.16 0.10 7.79 37.15 0.29 0.39 16 24 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 25 H 0.08 -0.24 7.10 -51.93 -0.37 -0.61 16 26 H 0.08 -0.01 6.53 -51.93 -0.34 -0.35 16 27 H 0.08 0.01 6.52 -51.93 -0.34 -0.33 16 28 H 0.08 -0.25 7.10 -51.93 -0.37 -0.62 16 29 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 30 H 0.17 0.40 8.06 -52.49 -0.42 -0.03 16 31 H 0.14 0.01 8.06 -52.48 -0.42 -0.42 16 32 H 0.12 -0.22 7.96 -51.93 -0.41 -0.63 16 33 H 0.38 -1.33 8.70 45.56 0.40 -0.93 16 34 H 0.13 -0.24 4.84 -52.49 -0.25 -0.49 16 35 H 0.14 -0.21 8.06 -52.49 -0.42 -0.63 16 36 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 37 H 0.08 -0.25 7.10 -51.93 -0.37 -0.62 16 38 H 0.08 0.01 6.52 -51.92 -0.34 -0.32 16 39 H 0.08 0.00 6.53 -51.93 -0.34 -0.34 16 40 H 0.08 -0.24 7.10 -51.93 -0.37 -0.61 16 41 H 0.08 -0.06 8.14 -51.93 -0.42 -0.49 16 LS Contribution 348.26 15.07 5.25 5.25 Total: 0.00 -8.04 348.26 -10.16 -18.20 By element: Atomic # 1 Polarization: -2.39 SS G_CDS: -4.86 Total: -7.25 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -1.65 Total: -1.34 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -2.14 Total: -7.29 kcal Atomic # 14 Polarization: -1.25 SS G_CDS: -4.26 Total: -5.51 kcal Atomic # 16 Polarization: 0.43 SS G_CDS: -2.50 Total: -2.07 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -8.04 -10.16 -18.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196097311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.734 kcal (2) G-P(sol) polarization free energy of solvation -8.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.60 seconds