Wall clock time and date at job start Tue Mar 17 2020 23:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 110.43971 * 2 1 4 4 O 1.44313 * 110.39087 * 122.35927 * 2 1 3 5 Xx 1.43475 * 104.65841 * 95.12931 * 4 2 1 6 5 C 1.56993 * 127.55357 * 219.56485 * 5 4 2 7 6 C 1.33554 * 124.64817 * 180.02562 * 6 5 4 8 7 C 1.40389 * 115.61059 * 180.02562 * 7 6 5 9 8 C 1.41554 * 128.87956 * 179.97438 * 8 7 6 10 9 C 1.35935 * 120.49231 * 179.97438 * 9 8 7 11 10 C 1.50704 * 119.64722 * 180.02562 * 10 9 8 12 11 O 1.42891 * 109.47217 * 299.99946 * 11 10 9 13 12 Si 1.86302 * 109.46857 * 179.97438 * 11 10 9 14 13 H 1.48504 * 109.46923 * 60.00337 * 13 11 10 15 14 H 1.48507 * 109.46904 * 179.97438 * 13 11 10 16 15 H 1.48488 * 109.47592 * 300.00181 * 13 11 10 17 16 C 1.38946 * 120.70509 * 359.97438 * 10 9 8 18 17 C 1.37425 * 120.19087 * 0.02630 * 17 10 9 19 18 C 1.39861 * 120.17214 * 359.97438 * 18 17 10 20 19 S 1.75486 * 124.65089 * 359.70044 * 6 5 4 21 20 O 1.43470 * 104.88998 * 39.58869 * 5 4 2 22 21 C 1.44315 * 104.66052 * 320.40882 * 21 5 4 23 22 C 1.53002 * 110.39090 * 142.48441 * 22 21 5 24 23 C 1.52988 * 110.39369 * 264.75677 * 22 21 5 25 24 H 1.09002 * 109.46974 * 299.09238 * 1 2 3 26 25 H 1.09005 * 109.46667 * 59.09230 * 1 2 3 27 26 H 1.08990 * 109.46968 * 179.09056 * 1 2 3 28 27 H 1.09001 * 109.46989 * 180.90662 * 3 2 1 29 28 H 1.09001 * 109.46681 * 300.90945 * 3 2 1 30 29 H 1.09002 * 109.46660 * 60.90443 * 3 2 1 31 30 H 1.08001 * 122.19902 * 0.02562 * 7 6 5 32 31 H 1.08007 * 119.75301 * 359.97438 * 9 8 7 33 32 H 1.09006 * 109.47222 * 59.99824 * 11 10 9 34 33 H 0.96706 * 113.99978 * 299.99689 * 12 11 10 35 34 H 1.07998 * 119.90469 * 180.02562 * 17 10 9 36 35 H 1.08001 * 119.91316 * 179.97438 * 18 17 10 37 36 H 1.08998 * 109.47520 * 61.44947 * 23 22 21 38 37 H 1.09002 * 109.47500 * 181.45770 * 23 22 21 39 38 H 1.09009 * 109.46879 * 301.45289 * 23 22 21 40 39 H 1.09001 * 109.47433 * 58.54611 * 24 22 21 41 40 H 1.08996 * 109.47467 * 178.54887 * 24 22 21 42 41 H 1.09000 * 109.47292 * 298.54805 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0644 1.4337 0.0000 4 8 2.0329 -0.7240 1.1426 5 6 2.0006 -3.4083 1.3927 6 6 2.2506 -4.6160 0.8804 7 6 1.9302 -5.7042 1.7075 8 6 2.0763 -7.0886 1.4508 9 6 1.7072 -8.0058 2.3837 10 6 1.8715 -9.4749 2.0905 11 8 1.1015 -9.8196 0.9373 12 14 1.2821 -10.4694 3.5515 13 1 -0.1505 -10.1728 3.8066 14 1 1.4435 -11.9171 3.2625 15 1 2.0827 -10.1111 4.7497 16 6 1.1809 -7.6033 3.6050 17 6 1.0266 -6.2666 3.8842 18 6 1.3991 -5.3039 2.9406 19 16 1.3301 -3.5466 3.0085 20 8 2.8255 -1.8653 -0.6585 21 6 2.0674 -0.7738 -1.2212 22 6 2.9732 0.1250 -2.0654 23 6 0.9107 -1.3086 -2.0676 24 1 -0.3633 0.4997 0.8980 25 1 -0.3633 0.5279 -0.8818 26 1 -0.3633 -1.0275 -0.0163 27 1 3.1541 1.4153 -0.0163 28 1 1.6966 1.9585 -0.8817 29 1 1.7230 1.9486 0.8980 30 1 2.6715 -4.7471 -0.1055 31 1 2.4841 -7.4186 0.5067 32 1 2.9231 -9.6927 1.9036 33 1 0.1539 -9.6520 1.0326 34 1 0.8923 -8.3431 4.3370 35 1 0.6167 -5.9588 4.8348 36 1 3.3903 -0.4520 -2.8907 37 1 2.3918 0.9576 -2.4614 38 1 3.7830 0.5098 -1.4453 39 1 0.2669 -1.9342 -1.4493 40 1 0.3336 -0.4731 -2.4637 41 1 1.3074 -1.8998 -2.8930 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196097311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 17 2020 23:08:05 Heat of formation + Delta-G solvation = 143.730840 kcal Electronic energy + Delta-G solvation = -22916.751468 eV Core-core repulsion = 19478.461499 eV Total energy + Delta-G solvation = -3438.289969 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.112 amu Computer time = 4.29 seconds Orbital eigenvalues (eV) -41.16118 -39.93364 -38.16283 -36.13474 -34.82002 -32.65972 -32.51514 -30.38077 -30.29347 -30.25864 -27.00782 -26.73941 -24.17387 -23.64739 -23.57380 -20.95864 -19.18438 -19.10273 -18.01208 -17.30048 -17.13979 -16.79184 -16.52409 -16.25270 -15.87573 -15.62379 -15.28077 -14.92293 -14.82877 -14.69558 -14.66169 -14.08161 -13.98927 -13.72622 -13.42748 -13.35412 -13.11766 -12.86016 -12.71776 -12.51101 -12.43002 -12.40972 -12.37606 -12.11116 -12.09880 -11.95299 -11.60888 -11.00087 -10.97662 -10.57569 -10.44510 -10.00521 -9.73756 -9.02063 -6.30316 -3.11432 -0.65016 -0.04512 0.19920 0.62918 0.97175 1.17510 1.49050 1.54038 1.94085 2.39207 2.96139 3.32633 3.48402 3.52184 3.59315 3.62612 3.64483 3.65990 3.94802 3.99202 4.05598 4.12514 4.32405 4.34928 4.43661 4.46013 4.47065 4.55065 4.60815 4.63305 4.64265 4.78088 4.81338 4.81765 4.87802 4.94793 4.97712 5.00792 5.13093 5.14299 5.26461 5.29239 5.59780 5.60554 6.69152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.150 3.850 3 C -0.146 4.146 4 O -0.464 6.464 5 C 0.053 3.947 6 C -0.175 4.175 7 C -0.061 4.061 8 C -0.051 4.051 9 C -0.110 4.110 10 C -0.081 4.081 11 O -0.552 6.552 12 Si 0.984 3.016 13 H -0.245 1.245 14 H -0.276 1.276 15 H -0.252 1.252 16 C -0.105 4.105 17 C -0.071 4.071 18 C -0.177 4.177 19 S 0.160 5.840 20 O -0.477 6.477 21 C 0.154 3.846 22 C -0.147 4.147 23 C -0.153 4.153 24 H 0.085 0.915 25 H 0.111 0.889 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.114 0.886 29 H 0.086 0.914 30 H 0.169 0.831 31 H 0.144 0.856 32 H 0.127 0.873 33 H 0.390 0.610 34 H 0.152 0.848 35 H 0.157 0.843 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.111 0.889 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.921 1.653 -1.845 5.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.081 3.919 3 C -0.203 4.203 4 O -0.392 6.392 5 C -0.064 4.064 6 C -0.206 4.206 7 C -0.069 4.069 8 C -0.071 4.071 9 C -0.113 4.113 10 C -0.191 4.191 11 O -0.359 6.359 12 Si 0.808 3.192 13 H -0.169 1.169 14 H -0.202 1.202 15 H -0.176 1.176 16 C -0.126 4.126 17 C -0.093 4.093 18 C -0.291 4.291 19 S 0.423 5.577 20 O -0.406 6.406 21 C 0.085 3.915 22 C -0.203 4.203 23 C -0.210 4.210 24 H 0.104 0.896 25 H 0.130 0.870 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.133 0.867 29 H 0.105 0.895 30 H 0.186 0.814 31 H 0.161 0.839 32 H 0.145 0.855 33 H 0.240 0.760 34 H 0.169 0.831 35 H 0.175 0.825 36 H 0.103 0.897 37 H 0.133 0.867 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.130 0.870 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.746 1.608 0.176 5.014 hybrid contribution 0.626 -0.252 -1.395 1.550 sum -4.119 1.356 -1.219 4.505 Atomic orbital electron populations 1.22709 0.88907 1.04138 1.05365 1.25112 0.94392 0.89360 0.83010 1.22683 1.02897 0.89162 1.05517 1.95196 1.78316 1.45827 1.19877 1.39721 0.99285 0.80217 0.87170 1.20863 1.07393 0.88077 1.04245 1.18040 1.03274 0.93218 0.92395 1.20732 0.97578 0.88447 1.00303 1.20047 0.99914 0.96983 0.94313 1.25132 1.01632 0.93089 0.99238 1.86502 1.24155 1.87166 1.38058 0.85189 0.80923 0.77732 0.75402 1.16863 1.20177 1.17647 1.21258 0.98723 0.95736 0.96836 1.20712 0.99037 0.90992 0.98556 1.23692 1.08105 0.97789 0.99526 1.85450 1.64056 0.97324 1.10902 1.95189 1.67976 1.44241 1.33172 1.25045 0.94303 0.90048 0.82071 1.22683 0.99358 1.00286 0.98024 1.22698 0.96755 1.03279 0.98301 0.89600 0.87005 0.91541 0.91385 0.86723 0.89511 0.81393 0.83861 0.85491 0.76038 0.83085 0.82517 0.89651 0.86743 0.91405 0.91578 0.87013 0.89751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 81. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.29 7.80 71.98 0.56 0.85 16 2 C 0.15 0.63 1.57 -10.37 -0.02 0.62 16 3 C -0.15 0.27 7.79 71.98 0.56 0.83 16 4 O -0.46 -7.29 14.24 -125.78 -1.79 -9.08 16 5 C 0.05 0.66 11.42 66.76 0.76 1.42 16 6 C -0.17 -1.66 10.19 21.73 0.22 -1.44 16 7 C -0.06 -0.41 5.87 -21.48 -0.13 -0.54 16 8 C -0.05 -0.15 9.54 22.55 0.22 0.06 16 9 C -0.11 0.00 5.35 -20.23 -0.11 -0.11 16 10 C -0.08 0.21 2.80 71.24 0.20 0.41 16 11 O -0.55 0.58 12.75 -148.98 -1.90 -1.32 16 12 Si 0.98 -3.42 25.03 68.60 1.72 -1.70 16 13 H -0.25 1.02 7.11 99.48 0.71 1.73 16 14 H -0.28 -0.18 7.11 99.48 0.71 0.52 16 15 H -0.25 0.71 7.11 99.48 0.71 1.42 16 16 C -0.10 0.10 8.64 22.25 0.19 0.29 16 17 C -0.07 -0.07 10.07 22.47 0.23 0.15 16 18 C -0.18 -1.02 6.50 23.12 0.15 -0.87 16 19 S 0.16 1.25 23.28 -56.49 -1.32 -0.07 16 20 O -0.48 -7.65 14.24 -125.78 -1.79 -9.44 16 21 C 0.15 0.67 1.57 -10.38 -0.02 0.65 16 22 C -0.15 0.24 7.79 71.98 0.56 0.80 16 23 C -0.15 0.27 7.79 71.98 0.56 0.83 16 24 H 0.09 -0.17 8.14 -2.39 -0.02 -0.19 16 25 H 0.11 -1.04 7.10 -2.38 -0.02 -1.06 16 26 H 0.07 0.04 6.53 -2.39 -0.02 0.02 16 27 H 0.07 0.05 6.52 -2.39 -0.02 0.04 16 28 H 0.11 -1.10 7.10 -2.39 -0.02 -1.12 16 29 H 0.09 -0.17 8.14 -2.39 -0.02 -0.19 16 30 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 31 H 0.14 0.17 8.06 -2.91 -0.02 0.15 16 32 H 0.13 -0.50 7.96 -2.38 -0.02 -0.52 16 33 H 0.39 -2.92 8.70 -74.05 -0.64 -3.57 16 34 H 0.15 -0.81 4.84 -2.91 -0.01 -0.82 16 35 H 0.16 -0.59 8.06 -2.91 -0.02 -0.62 16 36 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 37 H 0.11 -1.08 7.10 -2.39 -0.02 -1.10 16 38 H 0.07 0.06 6.52 -2.38 -0.02 0.05 16 39 H 0.07 0.05 6.53 -2.39 -0.02 0.03 16 40 H 0.11 -1.03 7.10 -2.39 -0.02 -1.05 16 41 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 Total: 0.00 -22.90 348.26 0.03 -22.87 By element: Atomic # 1 Polarization: -6.38 SS G_CDS: 1.17 Total: -5.22 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 3.94 Total: 3.96 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -5.48 Total: -19.84 kcal Atomic # 14 Polarization: -3.42 SS G_CDS: 1.72 Total: -1.70 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -1.32 Total: -0.07 kcal Total: -22.90 0.03 -22.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196097311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.600 kcal (2) G-P(sol) polarization free energy of solvation -22.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.29 seconds