Wall clock time and date at job start Wed Mar 18 2020 03:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 110.35431 * 2 1 4 4 O 1.44313 * 110.38877 * 122.30306 * 2 1 3 5 Xx 1.43475 * 104.66292 * 142.47971 * 4 2 1 6 5 O 1.43476 * 104.88751 * 320.40905 * 5 4 2 7 6 C 1.44311 * 104.66099 * 39.58729 * 6 5 4 8 7 C 1.53003 * 110.39384 * 217.51915 * 7 6 5 9 8 C 1.53008 * 110.39316 * 95.12914 * 7 6 5 10 9 C 1.56998 * 127.55555 * 140.14874 * 5 4 2 11 10 C 1.39522 * 120.00181 * 359.72404 * 10 5 4 12 11 C 1.37683 * 119.99660 * 179.72120 * 11 10 5 13 12 C 1.39517 * 120.00061 * 0.55530 * 12 11 10 14 13 C 1.39518 * 120.00449 * 359.71975 * 13 12 11 15 14 C 1.37680 * 120.00076 * 0.02562 * 14 13 12 16 15 C 1.48274 * 119.99853 * 179.70035 * 13 12 11 17 16 C 1.39404 * 120.12617 * 179.74390 * 16 13 12 18 17 C 1.38001 * 119.86987 * 179.69600 * 17 16 13 19 18 C 1.38340 * 120.12764 * 0.60686 * 18 17 16 20 19 C 1.38335 * 120.25309 * 359.66838 * 19 18 17 21 20 C 1.38004 * 120.13227 * 0.02978 * 20 19 18 22 21 C 1.50696 * 119.87347 * 179.69664 * 19 18 17 23 22 O 1.42895 * 109.47298 * 244.97577 * 22 19 18 24 23 Si 1.86304 * 109.47072 * 4.97538 * 22 19 18 25 24 H 1.48495 * 109.46809 * 60.00208 * 24 22 19 26 25 H 1.48496 * 109.46918 * 180.02562 * 24 22 19 27 26 H 1.48494 * 109.46937 * 300.00109 * 24 22 19 28 27 H 1.09000 * 109.46539 * 299.15730 * 1 2 3 29 28 H 1.09003 * 109.46815 * 59.15289 * 1 2 3 30 29 H 1.08993 * 109.47461 * 179.15454 * 1 2 3 31 30 H 1.09001 * 109.47519 * 180.84556 * 3 2 1 32 31 H 1.08997 * 109.47101 * 300.84948 * 3 2 1 33 32 H 1.09008 * 109.46976 * 60.84462 * 3 2 1 34 33 H 1.09000 * 109.47440 * 175.28017 * 8 7 6 35 34 H 1.09006 * 109.46714 * 295.28076 * 8 7 6 36 35 H 1.08998 * 109.46910 * 55.27566 * 8 7 6 37 36 H 1.09004 * 109.46854 * 304.72092 * 9 7 6 38 37 H 1.08995 * 109.46705 * 64.71516 * 9 7 6 39 38 H 1.08997 * 109.47145 * 184.72379 * 9 7 6 40 39 H 1.08001 * 120.00580 * 359.97438 * 11 10 5 41 40 H 1.08003 * 119.99538 * 180.27923 * 12 11 10 42 41 H 1.07996 * 120.00514 * 179.97438 * 14 13 12 43 42 H 1.07999 * 120.00680 * 179.97438 * 15 14 13 44 43 H 1.08004 * 120.06782 * 0.02562 * 17 16 13 45 44 H 1.08003 * 119.94092 * 180.29823 * 18 17 16 46 45 H 1.08002 * 119.93820 * 179.97438 * 20 19 18 47 46 H 1.08000 * 120.06441 * 179.97438 * 21 20 19 48 47 H 1.09005 * 109.46889 * 124.97597 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0622 1.4344 0.0000 4 8 2.0328 -0.7229 1.1434 5 8 2.8254 -1.8661 -0.6565 6 6 2.0674 -0.7752 -1.2203 7 6 0.9087 -1.3109 -2.0639 8 6 2.9732 0.1227 -2.0655 9 6 4.5615 -1.6247 1.3921 10 6 4.7525 -1.1032 2.6720 11 6 5.9522 -1.2926 3.3205 12 6 6.9808 -1.9962 2.6933 13 6 6.7918 -2.5128 1.4111 14 6 5.5904 -2.3280 0.7646 15 6 8.2750 -2.1945 3.3891 16 6 9.3027 -2.9016 2.7669 17 6 10.5073 -3.0776 3.4168 18 6 10.6917 -2.5647 4.6883 19 6 9.6735 -1.8671 5.3129 20 6 8.4667 -1.6795 4.6702 21 6 12.0071 -2.7662 5.3955 22 8 11.8069 -3.5838 6.5501 23 14 13.2097 -3.6019 4.2438 24 1 13.4178 -2.7521 3.0439 25 1 14.5057 -3.8009 4.9408 26 1 12.6639 -4.9190 3.8289 27 1 -0.3632 0.5007 0.8975 28 1 -0.3633 0.5270 -0.8823 29 1 -0.3634 -1.0275 -0.0152 30 1 3.1520 1.4177 -0.0152 31 1 1.6945 1.9583 -0.8822 32 1 1.7191 1.9492 0.8975 33 1 0.2980 -0.4782 -2.4130 34 1 1.3049 -1.8554 -2.9212 35 1 0.2980 -1.9808 -1.4587 36 1 3.8149 0.4614 -1.4613 37 1 3.3441 -0.4393 -2.9226 38 1 2.4060 0.9855 -2.4146 39 1 3.9580 -0.5543 3.1557 40 1 6.0984 -0.8928 4.3131 41 1 7.5882 -3.0571 0.9254 42 1 5.4442 -2.7275 -0.2281 43 1 9.1584 -3.3064 1.7760 44 1 11.3060 -3.6212 2.9339 45 1 9.8228 -1.4692 6.3058 46 1 7.6723 -1.1350 5.1590 47 1 12.4077 -1.7992 5.7000 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169993799.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 18 2020 03:11:15 Heat of formation + Delta-G solvation = 86.943577 kcal Electronic energy + Delta-G solvation = -26689.767169 eV Core-core repulsion = 22889.754453 eV Total energy + Delta-G solvation = -3800.012716 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.163 amu Computer time = 8.76 seconds Orbital eigenvalues (eV) -41.08730 -39.46856 -39.37548 -34.76590 -34.13423 -32.88121 -32.35986 -31.97875 -31.67296 -30.05681 -29.83351 -29.47726 -26.56371 -25.44076 -24.70413 -23.20411 -22.97086 -22.56539 -21.30946 -18.78505 -18.48932 -16.82722 -16.77829 -16.66996 -16.43374 -15.96381 -15.77809 -15.50971 -15.41456 -15.03710 -14.97619 -14.72810 -14.43711 -14.31584 -14.10837 -13.87230 -13.71162 -13.65998 -13.42717 -13.13633 -13.10743 -12.98755 -12.80388 -12.41193 -12.35562 -12.30488 -12.14578 -12.04725 -11.95095 -11.89938 -11.77667 -11.42891 -10.82590 -10.50345 -10.27726 -9.94100 -9.81638 -9.45921 -9.01745 -8.37937 -7.77594 -5.76169 -2.61316 -0.65254 -0.10269 0.54381 0.75622 1.36401 1.50603 1.55695 2.26313 2.55412 3.05352 3.28498 3.36033 3.42961 3.56345 3.71831 3.80909 3.84565 3.96343 4.03095 4.06032 4.07547 4.23350 4.35200 4.45371 4.48963 4.53901 4.53985 4.56456 4.61326 4.66512 4.68257 4.70500 4.75261 4.75519 4.92098 4.94763 4.95925 5.02796 5.08649 5.11425 5.11754 5.16626 5.27476 5.28584 5.33724 5.48935 5.56536 5.65030 5.73578 5.98203 6.14980 6.27956 7.71747 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.029508 B = 0.002117 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.682378 B =13224.395095 C =13716.598100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.137 3.863 3 C -0.148 4.148 4 O -0.577 6.577 5 O -0.577 6.577 6 C 0.137 3.863 7 C -0.142 4.142 8 C -0.148 4.148 9 C 0.225 3.775 10 C -0.101 4.101 11 C -0.069 4.069 12 C -0.017 4.017 13 C -0.067 4.067 14 C -0.100 4.100 15 C -0.088 4.088 16 C -0.084 4.084 17 C -0.165 4.165 18 C -0.073 4.073 19 C -0.132 4.132 20 C -0.088 4.088 21 C -0.037 4.037 22 O -0.943 6.943 23 Si 0.953 3.047 24 H -0.248 1.248 25 H -0.306 1.306 26 H -0.283 1.283 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.172 0.828 40 H 0.185 0.815 41 H 0.189 0.811 42 H 0.173 0.827 43 H 0.165 0.835 44 H 0.117 0.883 45 H 0.101 0.899 46 H 0.158 0.842 47 H -0.027 1.027 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.484 11.357 -19.183 29.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.077 3.923 3 C -0.205 4.205 4 O -0.514 6.514 5 O -0.513 6.513 6 C 0.077 3.923 7 C -0.199 4.199 8 C -0.205 4.205 9 C 0.221 3.779 10 C -0.118 4.118 11 C -0.086 4.086 12 C -0.017 4.017 13 C -0.084 4.084 14 C -0.118 4.118 15 C -0.088 4.088 16 C -0.101 4.101 17 C -0.183 4.183 18 C -0.074 4.074 19 C -0.151 4.151 20 C -0.105 4.105 21 C -0.153 4.153 22 O -0.893 6.893 23 Si 0.783 3.217 24 H -0.174 1.174 25 H -0.234 1.234 26 H -0.209 1.209 27 H 0.086 0.914 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.189 0.811 40 H 0.202 0.798 41 H 0.206 0.794 42 H 0.191 0.809 43 H 0.182 0.818 44 H 0.135 0.865 45 H 0.119 0.881 46 H 0.175 0.825 47 H -0.010 1.010 Dipole moment (debyes) X Y Z Total from point charges -18.623 10.391 -19.123 28.644 hybrid contribution -0.595 -0.060 0.521 0.793 sum -19.218 10.331 -18.602 28.672 Atomic orbital electron populations 1.22457 0.91767 1.02421 1.03293 1.23769 0.92747 0.89555 0.86256 1.22510 1.01742 0.93006 1.03287 1.95011 1.71870 1.59547 1.24971 1.95009 1.71808 1.41197 1.43315 1.23771 0.93359 0.90412 0.84785 1.22454 0.97328 1.01946 0.98163 1.22509 0.99427 1.00082 0.98479 1.30911 0.58620 1.02614 0.85790 1.21679 0.98431 1.01163 0.90574 1.21608 0.87704 0.98346 1.00972 1.19155 0.92748 0.95924 0.93885 1.21626 0.93979 0.99541 0.93293 1.21705 0.87518 0.98514 1.04020 1.18452 0.92858 1.02691 0.94814 1.21442 0.91170 0.96946 1.00583 1.21081 0.99309 1.02896 0.95002 1.21733 0.99878 0.92107 0.93659 1.20929 0.93995 1.00599 0.99532 1.21469 0.96385 0.98622 0.94061 1.23647 0.95977 0.95665 1.00020 1.94889 1.91955 1.65793 1.36688 0.86170 0.78290 0.80939 0.76280 1.17354 1.23430 1.20882 0.91435 0.88733 0.92951 0.92525 0.89037 0.91402 0.88787 0.91232 0.93097 0.92649 0.91229 0.89080 0.81104 0.79783 0.79375 0.80938 0.81779 0.86508 0.88088 0.82477 1.01028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 135. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 7.78 71.98 0.56 -2.28 16 2 C 0.14 3.46 1.57 -10.38 -0.02 3.44 16 3 C -0.15 -2.75 7.79 71.98 0.56 -2.19 16 4 O -0.58 -20.30 14.19 -125.78 -1.78 -22.08 16 5 O -0.58 -20.17 14.19 -125.78 -1.78 -21.96 16 6 C 0.14 3.45 1.57 -10.37 -0.02 3.43 16 7 C -0.14 -2.81 7.78 71.98 0.56 -2.25 16 8 C -0.15 -2.72 7.79 71.98 0.56 -2.16 16 9 C 0.22 5.10 10.48 22.89 0.24 5.34 16 10 C -0.10 -1.83 10.02 22.45 0.22 -1.60 16 11 C -0.07 -1.11 9.41 22.45 0.21 -0.90 16 12 C -0.02 -0.32 5.88 -19.99 -0.12 -0.44 16 13 C -0.07 -1.03 9.41 22.45 0.21 -0.82 16 14 C -0.10 -1.76 10.02 22.45 0.22 -1.54 16 15 C -0.09 -2.30 5.88 -20.05 -0.12 -2.42 16 16 C -0.08 -2.38 9.43 22.49 0.21 -2.17 16 17 C -0.17 -6.48 8.65 22.24 0.19 -6.29 16 18 C -0.07 -3.56 5.39 -19.82 -0.11 -3.67 16 19 C -0.13 -5.66 9.67 22.24 0.21 -5.44 16 20 C -0.09 -2.65 9.43 22.50 0.21 -2.44 16 21 C -0.04 -2.17 2.88 71.23 0.21 -1.96 16 22 O -0.94 -70.73 17.97 -148.98 -2.68 -73.41 16 23 Si 0.95 46.13 25.38 68.60 1.74 47.87 16 24 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 25 H -0.31 -15.62 7.11 99.48 0.71 -14.92 16 26 H -0.28 -13.67 7.04 99.48 0.70 -12.97 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.09 1.19 7.00 -2.39 -0.02 1.17 16 29 H 0.05 1.19 6.60 -2.39 -0.02 1.17 16 30 H 0.06 1.12 6.62 -2.39 -0.02 1.11 16 31 H 0.09 1.09 7.01 -2.39 -0.02 1.08 16 32 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.09 1.19 6.90 -2.39 -0.02 1.17 16 34 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.05 1.17 6.72 -2.39 -0.02 1.15 16 36 H 0.05 1.10 6.73 -2.38 -0.02 1.08 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.09 1.09 6.90 -2.39 -0.02 1.07 16 39 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 40 H 0.19 2.12 6.19 -2.91 -0.02 2.11 16 41 H 0.19 1.86 6.19 -2.91 -0.02 1.84 16 42 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 43 H 0.16 3.02 6.20 -2.91 -0.02 3.00 16 44 H 0.12 4.44 4.84 -2.91 -0.01 4.43 16 45 H 0.10 4.59 8.06 -2.91 -0.02 4.57 16 46 H 0.16 3.33 6.20 -2.91 -0.02 3.31 16 47 H -0.03 -1.60 7.96 -2.38 -0.02 -1.62 16 Total: -1.00 -96.81 382.60 1.24 -95.57 By element: Atomic # 1 Polarization: -1.37 SS G_CDS: 1.73 Total: 0.36 kcal Atomic # 6 Polarization: -30.37 SS G_CDS: 4.02 Total: -26.35 kcal Atomic # 8 Polarization: -111.21 SS G_CDS: -6.25 Total: -117.45 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.74 Total: 47.87 kcal Total: -96.81 1.24 -95.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169993799.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.517 kcal (2) G-P(sol) polarization free energy of solvation -96.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.76 seconds