Wall clock time and date at job start Wed Mar 18 2020 03:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 110.43971 * 2 1 4 4 O 1.44313 * 110.39087 * 122.35927 * 2 1 3 5 Xx 1.43475 * 104.65841 * 95.12931 * 4 2 1 6 5 O 1.43470 * 104.88998 * 39.58869 * 5 4 2 7 6 C 1.44315 * 104.66052 * 320.40882 * 6 5 4 8 7 C 1.53002 * 110.39090 * 142.48441 * 7 6 5 9 8 C 1.52988 * 110.39369 * 264.75677 * 7 6 5 10 9 C 1.56993 * 127.55357 * 219.56485 * 5 4 2 11 10 C 1.39531 * 120.00304 * 359.72938 * 10 5 4 12 11 C 1.37683 * 119.99833 * 179.69266 * 11 10 5 13 12 C 1.39516 * 119.99985 * 0.60252 * 12 11 10 14 13 C 1.39523 * 120.00603 * 359.67678 * 13 12 11 15 14 C 1.37678 * 119.99690 * 0.02562 * 14 13 12 16 15 C 1.48275 * 119.99827 * 179.69373 * 13 12 11 17 16 C 1.39393 * 120.12485 * 179.97438 * 16 13 12 18 17 C 1.38021 * 119.86517 * 179.97438 * 17 16 13 19 18 C 1.38319 * 120.12897 * 359.97438 * 18 17 16 20 19 C 1.38357 * 120.25837 * 0.02562 * 19 18 17 21 20 C 1.37979 * 120.12534 * 359.69684 * 20 19 18 22 21 C 1.50701 * 119.93364 * 179.97438 * 20 19 18 23 22 O 1.42897 * 109.46710 * 244.99870 * 22 20 19 24 23 Si 1.86297 * 109.47268 * 4.99840 * 22 20 19 25 24 H 1.48496 * 109.47216 * 59.99962 * 24 22 20 26 25 H 1.48500 * 109.47284 * 180.02562 * 24 22 20 27 26 H 1.48503 * 109.47037 * 300.00256 * 24 22 20 28 27 H 1.09002 * 109.46974 * 299.09238 * 1 2 3 29 28 H 1.09005 * 109.46667 * 59.09230 * 1 2 3 30 29 H 1.08990 * 109.46968 * 179.09056 * 1 2 3 31 30 H 1.09001 * 109.46989 * 180.90662 * 3 2 1 32 31 H 1.09001 * 109.46681 * 300.90945 * 3 2 1 33 32 H 1.09002 * 109.46660 * 60.90443 * 3 2 1 34 33 H 1.08998 * 109.47520 * 61.44947 * 8 7 6 35 34 H 1.09002 * 109.47500 * 181.45770 * 8 7 6 36 35 H 1.09009 * 109.46879 * 301.45289 * 8 7 6 37 36 H 1.09001 * 109.47433 * 58.54611 * 9 7 6 38 37 H 1.08996 * 109.47467 * 178.54887 * 9 7 6 39 38 H 1.09000 * 109.47292 * 298.54805 * 9 7 6 40 39 H 1.07997 * 120.00203 * 359.97438 * 11 10 5 41 40 H 1.07997 * 119.99867 * 180.29489 * 12 11 10 42 41 H 1.08000 * 120.00410 * 180.02562 * 14 13 12 43 42 H 1.08004 * 120.00319 * 180.02562 * 15 14 13 44 43 H 1.07994 * 120.06462 * 359.95894 * 17 16 13 45 44 H 1.07999 * 119.93508 * 180.02562 * 18 17 16 46 45 H 1.08003 * 119.86942 * 179.97438 * 19 18 17 47 46 H 1.07996 * 120.06164 * 180.27452 * 21 20 19 48 47 H 1.08992 * 109.46983 * 125.00206 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0644 1.4337 0.0000 4 8 2.0329 -0.7240 1.1426 5 8 2.8255 -1.8653 -0.6585 6 6 2.0674 -0.7738 -1.2212 7 6 2.9732 0.1250 -2.0654 8 6 0.9107 -1.3086 -2.0676 9 6 2.0006 -3.4083 1.3927 10 6 1.4629 -3.4052 2.6803 11 6 1.2158 -4.5959 3.3259 12 6 1.5147 -5.8052 2.6977 13 6 2.0579 -5.8083 1.4126 14 6 2.2993 -4.6178 0.7644 15 6 1.2549 -7.0873 3.3958 16 6 1.5521 -8.2971 2.7704 17 6 1.3086 -9.4874 3.4253 18 6 0.7712 -9.4812 4.6998 19 6 0.4743 -8.2835 5.3255 20 6 0.7187 -7.0872 4.6828 21 6 -0.1115 -8.2853 6.7140 22 8 -1.4349 -7.7477 6.6732 23 14 -0.1703 -10.0314 7.3609 24 1 1.2049 -10.5901 7.4031 25 1 -0.7481 -10.0333 8.7289 26 1 -1.0150 -10.8626 6.4661 27 1 -0.3633 0.4997 0.8980 28 1 -0.3633 0.5279 -0.8818 29 1 -0.3633 -1.0275 -0.0163 30 1 3.1541 1.4153 -0.0163 31 1 1.6966 1.9585 -0.8817 32 1 1.7230 1.9486 0.8980 33 1 3.3903 -0.4520 -2.8907 34 1 2.3918 0.9576 -2.4614 35 1 3.7830 0.5098 -1.4453 36 1 0.2669 -1.9342 -1.4493 37 1 0.3336 -0.4731 -2.4637 38 1 1.3074 -1.8998 -2.8930 39 1 1.2363 -2.4690 3.1686 40 1 0.7951 -4.5936 4.3206 41 1 2.2889 -6.7445 0.9261 42 1 2.7194 -4.6201 -0.2306 43 1 1.9719 -8.3030 1.7754 44 1 1.5388 -10.4253 2.9420 45 1 0.5820 -10.4151 5.2083 46 1 0.4907 -6.1528 5.1738 47 1 0.5084 -7.6752 7.3706 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725429634.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 18 2020 03:13:32 Heat of formation + Delta-G solvation = 87.776603 kcal Electronic energy + Delta-G solvation = -26863.039338 eV Core-core repulsion = 23063.062745 eV Total energy + Delta-G solvation = -3799.976593 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.163 amu Computer time = 6.41 seconds Orbital eigenvalues (eV) -41.09372 -39.45826 -39.40192 -34.57960 -34.17654 -33.32029 -32.65913 -32.02875 -30.81217 -30.08047 -29.86682 -29.65027 -26.57300 -25.58832 -24.46321 -23.71668 -23.22860 -22.16278 -21.10865 -18.81272 -18.19685 -17.28495 -16.79568 -16.66061 -16.48260 -16.04983 -15.72148 -15.53727 -15.37354 -15.13677 -14.84150 -14.72116 -14.45968 -14.30813 -13.92179 -13.87520 -13.82493 -13.68353 -13.45533 -13.17637 -13.08613 -12.98061 -12.73153 -12.53721 -12.39875 -12.39149 -12.08228 -11.97510 -11.91634 -11.88827 -11.72086 -11.53759 -10.94965 -10.53360 -10.32280 -9.98361 -9.53579 -9.49339 -9.15407 -8.36912 -7.77107 -5.79140 -2.65465 -0.69306 -0.13552 0.65214 0.72085 1.35333 1.49155 1.54606 2.23793 2.54092 3.07193 3.27949 3.36909 3.41630 3.53049 3.71232 3.78633 3.81952 3.94036 4.03655 4.08814 4.14016 4.22653 4.27751 4.39673 4.44179 4.53348 4.54909 4.57483 4.63839 4.65941 4.67441 4.69376 4.72606 4.73961 4.92160 4.93089 4.94924 5.01839 5.07205 5.09849 5.14763 5.24218 5.26273 5.27843 5.33315 5.48077 5.55985 5.69640 5.71164 5.96543 6.18741 6.23532 7.72262 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024338 B = 0.002299 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.175501 B =12175.220544 C =12865.269890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.137 3.863 3 C -0.141 4.141 4 O -0.576 6.576 5 O -0.565 6.565 6 C 0.136 3.864 7 C -0.141 4.141 8 C -0.149 4.149 9 C 0.222 3.778 10 C -0.106 4.106 11 C -0.080 4.080 12 C -0.028 4.028 13 C -0.055 4.055 14 C -0.097 4.097 15 C -0.063 4.063 16 C -0.115 4.115 17 C -0.106 4.106 18 C -0.155 4.155 19 C -0.091 4.091 20 C -0.111 4.111 21 C -0.032 4.032 22 O -0.942 6.942 23 Si 0.952 3.048 24 H -0.251 1.251 25 H -0.306 1.306 26 H -0.283 1.283 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.204 0.796 42 H 0.183 0.817 43 H 0.175 0.825 44 H 0.164 0.836 45 H 0.112 0.888 46 H 0.103 0.897 47 H -0.029 1.029 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.738 8.774 -20.952 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.077 3.923 3 C -0.198 4.198 4 O -0.513 6.513 5 O -0.502 6.502 6 C 0.076 3.924 7 C -0.198 4.198 8 C -0.206 4.206 9 C 0.217 3.783 10 C -0.124 4.124 11 C -0.097 4.097 12 C -0.028 4.028 13 C -0.071 4.071 14 C -0.114 4.114 15 C -0.063 4.063 16 C -0.132 4.132 17 C -0.124 4.124 18 C -0.172 4.172 19 C -0.092 4.092 20 C -0.129 4.129 21 C -0.149 4.149 22 O -0.892 6.892 23 Si 0.783 3.217 24 H -0.177 1.177 25 H -0.234 1.234 26 H -0.209 1.209 27 H 0.083 0.917 28 H 0.113 0.887 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.180 0.820 40 H 0.174 0.826 41 H 0.221 0.779 42 H 0.200 0.800 43 H 0.192 0.808 44 H 0.181 0.819 45 H 0.130 0.870 46 H 0.121 0.879 47 H -0.012 1.012 Dipole moment (debyes) X Y Z Total from point charges 8.773 7.578 -20.231 23.317 hybrid contribution -0.369 1.407 0.605 1.575 sum 8.404 8.985 -19.626 23.163 Atomic orbital electron populations 1.22535 0.92339 1.02544 1.03311 1.23828 0.92671 0.89646 0.86143 1.22462 1.01759 0.92239 1.03377 1.95034 1.80097 1.51153 1.24969 1.95008 1.67898 1.45002 1.42258 1.23848 0.93236 0.90694 0.84622 1.22461 0.99313 0.99865 0.98158 1.22519 0.97441 1.02138 0.98538 1.31083 1.02295 0.59170 0.85703 1.21542 0.99600 1.00051 0.91195 1.21522 0.99556 0.87987 1.00665 1.19278 0.96760 0.92204 0.94574 1.21705 0.97125 0.96092 0.92217 1.21817 1.00797 0.84594 1.04167 1.18691 1.01655 0.92743 0.93241 1.21509 1.00502 0.90037 1.01161 1.21385 0.97837 1.00012 0.93130 1.21336 1.01630 0.96632 0.97641 1.21473 0.93274 0.94062 1.00347 1.21036 0.99260 0.97678 0.94927 1.23561 0.94558 1.05037 0.91698 1.94883 1.19545 1.81024 1.93778 0.86183 0.78201 0.80232 0.77102 1.17691 1.23413 1.20948 0.91667 0.88722 0.92692 0.92602 0.88482 0.91574 0.91035 0.88659 0.92781 0.92731 0.89010 0.90934 0.81965 0.82578 0.77911 0.80004 0.80804 0.81857 0.87015 0.87888 1.01232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 75. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 7.80 71.98 0.56 -2.68 16 2 C 0.14 3.78 1.57 -10.37 -0.02 3.76 16 3 C -0.14 -3.04 7.79 71.98 0.56 -2.48 16 4 O -0.58 -22.01 14.19 -125.78 -1.78 -23.79 16 5 O -0.57 -20.28 14.19 -125.78 -1.78 -22.06 16 6 C 0.14 3.59 1.57 -10.38 -0.02 3.57 16 7 C -0.14 -2.84 7.79 71.98 0.56 -2.27 16 8 C -0.15 -2.93 7.79 71.98 0.56 -2.37 16 9 C 0.22 5.89 10.48 22.89 0.24 6.13 16 10 C -0.11 -2.72 10.02 22.45 0.22 -2.49 16 11 C -0.08 -2.09 9.41 22.45 0.21 -1.88 16 12 C -0.03 -0.70 5.88 -19.99 -0.12 -0.81 16 13 C -0.05 -0.92 9.41 22.45 0.21 -0.71 16 14 C -0.10 -1.87 10.02 22.45 0.22 -1.64 16 15 C -0.06 -1.97 5.88 -20.04 -0.12 -2.09 16 16 C -0.11 -2.85 9.43 22.50 0.21 -2.64 16 17 C -0.11 -3.03 10.03 22.24 0.22 -2.80 16 18 C -0.15 -6.19 8.67 22.32 0.19 -6.00 16 19 C -0.09 -4.48 5.38 -19.90 -0.11 -4.59 16 20 C -0.11 -4.79 9.06 22.49 0.20 -4.58 16 21 C -0.03 -1.90 2.88 71.24 0.21 -1.70 16 22 O -0.94 -70.66 17.97 -148.98 -2.68 -73.33 16 23 Si 0.95 46.83 25.39 68.60 1.74 48.57 16 24 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 25 H -0.31 -15.81 7.11 99.48 0.71 -15.10 16 26 H -0.28 -13.91 7.04 99.48 0.70 -13.21 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 1.35 7.10 -2.38 -0.02 1.34 16 29 H 0.05 1.29 6.53 -2.39 -0.02 1.27 16 30 H 0.05 1.33 6.52 -2.39 -0.02 1.31 16 31 H 0.10 1.33 7.10 -2.39 -0.02 1.32 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.09 1.23 7.10 -2.39 -0.02 1.21 16 35 H 0.05 1.23 6.52 -2.38 -0.02 1.22 16 36 H 0.05 1.18 6.53 -2.39 -0.02 1.17 16 37 H 0.09 1.20 7.10 -2.39 -0.02 1.19 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.16 4.15 8.06 -2.91 -0.02 4.12 16 40 H 0.16 4.37 6.19 -2.91 -0.02 4.35 16 41 H 0.20 1.72 6.19 -2.91 -0.02 1.70 16 42 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 43 H 0.17 2.33 6.19 -2.91 -0.02 2.31 16 44 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 45 H 0.11 4.37 4.85 -2.91 -0.01 4.36 16 46 H 0.10 4.65 6.20 -2.91 -0.02 4.63 16 47 H -0.03 -1.73 7.96 -2.39 -0.02 -1.75 16 Total: -1.00 -96.70 382.63 1.24 -95.45 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: 1.73 Total: 3.44 kcal Atomic # 6 Polarization: -32.29 SS G_CDS: 4.02 Total: -28.27 kcal Atomic # 8 Polarization: -112.94 SS G_CDS: -6.25 Total: -119.19 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.74 Total: 48.57 kcal Total: -96.70 1.24 -95.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725429634.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.231 kcal (2) G-P(sol) polarization free energy of solvation -96.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.41 seconds