Wall clock time and date at job start Wed Mar 18 2020 07:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86302 * 109.47128 * 2 1 4 4 H 1.48502 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46749 * 300.00058 * 3 2 1 6 6 H 1.48498 * 109.47006 * 60.00000 * 3 2 1 7 7 C 1.53002 * 109.47335 * 119.99924 * 2 1 3 8 8 N 1.46898 * 109.46851 * 66.12722 * 7 2 1 9 9 C 1.46953 * 111.00578 * 53.82053 * 8 7 2 10 10 C 1.53776 * 108.96339 * 180.22761 * 9 8 7 11 11 H 1.09004 * 112.31744 * 187.41592 * 10 9 8 12 12 C 1.54689 * 107.63177 * 312.37975 * 10 9 8 13 13 C 1.54324 * 104.72693 * 87.28450 * 12 10 9 14 14 C 1.54705 * 104.71837 * 359.97438 * 13 12 10 15 15 H 1.08996 * 112.41628 * 147.84077 * 14 13 12 16 16 C 1.46961 * 111.00085 * 289.01170 * 8 7 2 17 17 N 1.48862 * 103.99800 * 25.94018 * 14 13 12 18 18 C 1.46905 * 111.00016 * 76.04158 * 17 14 13 19 19 C 1.50701 * 109.46783 * 56.12102 * 18 17 14 20 20 C 1.38239 * 119.99668 * 269.72498 * 19 18 17 21 21 C 1.38240 * 119.99678 * 179.76909 * 20 19 18 22 22 C 1.38237 * 119.99805 * 0.48477 * 21 20 19 23 23 C 1.38235 * 120.00197 * 359.79220 * 22 21 20 24 24 C 1.38227 * 120.00135 * 90.00007 * 19 18 17 25 25 C 1.52994 * 109.47253 * 186.12512 * 7 2 1 26 26 C 1.53002 * 109.47253 * 180.02562 * 25 7 2 27 27 C 1.53001 * 109.47257 * 299.99936 * 26 25 7 28 28 C 1.53004 * 109.46844 * 59.99906 * 27 26 25 29 29 C 1.53001 * 109.47101 * 306.12808 * 7 2 1 30 30 H 0.96697 * 113.99283 * 299.99453 * 1 2 3 31 31 H 1.08999 * 109.46757 * 240.00065 * 2 1 3 32 32 H 1.09005 * 109.55175 * 300.07269 * 9 8 7 33 33 H 1.09001 * 109.55350 * 60.27829 * 9 8 7 34 34 H 1.08997 * 110.39050 * 206.09884 * 12 10 9 35 35 H 1.09004 * 110.38647 * 328.47840 * 12 10 9 36 36 H 1.08998 * 110.39609 * 241.18926 * 13 12 10 37 37 H 1.09001 * 110.39147 * 118.80757 * 13 12 10 38 38 H 1.09004 * 109.55714 * 299.61965 * 16 8 7 39 39 H 1.08996 * 109.55207 * 59.92656 * 16 8 7 40 40 H 1.08995 * 109.46734 * 176.11865 * 18 17 14 41 41 H 1.08999 * 109.46847 * 296.12128 * 18 17 14 42 42 H 1.08003 * 120.00109 * 0.02562 * 20 19 18 43 43 H 1.08000 * 119.99719 * 180.25184 * 21 20 19 44 44 H 1.07993 * 119.99825 * 179.77094 * 22 21 20 45 45 H 1.07996 * 120.00148 * 179.97438 * 23 22 21 46 46 H 1.08005 * 120.00036 * 0.02562 * 24 19 18 47 47 H 1.08998 * 109.47327 * 300.00207 * 25 7 2 48 48 H 1.09003 * 109.47200 * 59.99772 * 25 7 2 49 49 H 1.08999 * 109.46812 * 179.97438 * 26 25 7 50 50 H 1.09006 * 109.46922 * 60.00199 * 26 25 7 51 51 H 1.08997 * 109.47024 * 300.00489 * 27 26 25 52 52 H 1.08996 * 109.47249 * 179.97438 * 27 26 25 53 53 H 1.08998 * 109.47234 * 179.97438 * 28 27 26 54 54 H 1.08998 * 109.47266 * 59.99617 * 28 27 26 55 55 H 1.09003 * 109.46666 * 299.99807 * 29 7 2 56 56 H 1.08998 * 109.47051 * 59.99559 * 29 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 1 3.5351 1.7565 -0.0006 5 1 1.5550 2.4564 -1.2125 6 1 1.5550 2.4565 1.2125 7 6 1.9391 -0.7212 1.2492 8 7 1.5739 -2.1423 1.1776 9 6 2.0401 -2.7432 -0.0798 10 6 1.6291 -4.2248 -0.1081 11 1 2.0581 -4.7572 -0.9570 12 6 2.0199 -4.8455 1.2538 13 6 0.8060 -4.5797 2.1689 14 6 -0.2031 -3.8228 1.2733 15 1 -1.2379 -4.0442 1.5343 16 6 0.1273 -2.3242 1.3621 17 7 0.1411 -4.2612 -0.1070 18 6 -0.3518 -5.6207 -0.3660 19 6 -1.8371 -5.6724 -0.1167 20 6 -2.3163 -5.9927 1.1398 21 6 -3.6788 -6.0354 1.3697 22 6 -4.5621 -5.7676 0.3407 23 6 -4.0829 -5.4529 -0.9172 24 6 -2.7204 -5.4050 -1.1457 25 6 3.4613 -0.5893 1.3286 26 6 3.9714 -1.3111 2.5775 27 6 3.3397 -0.6848 3.8223 28 6 1.8174 -0.8167 3.7430 29 6 1.3073 -0.0944 2.4938 30 1 -0.3932 0.4416 0.7651 31 1 1.7923 -0.5138 -0.8900 32 1 1.5864 -2.2225 -0.9232 33 1 3.1253 -2.6627 -0.1423 34 1 2.1885 -5.9172 1.1483 35 1 2.9097 -4.3577 1.6521 36 1 1.0983 -3.9612 3.0175 37 1 0.3771 -5.5206 2.5137 38 1 -0.1666 -1.9433 2.3402 39 1 -0.4105 -1.7851 0.5823 40 1 -0.1477 -5.8898 -1.4023 41 1 0.1528 -6.3226 0.2979 42 1 -1.6262 -6.2055 1.9429 43 1 -4.0531 -6.2817 2.3524 44 1 -5.6265 -5.8046 0.5193 45 1 -4.7730 -5.2441 -1.7213 46 1 -2.3460 -5.1595 -2.1286 47 1 3.9114 -1.0359 0.4420 48 1 3.7323 0.4651 1.3816 49 1 5.0559 -1.2174 2.6337 50 1 3.7004 -2.3656 2.5238 51 1 3.6107 0.3696 3.8758 52 1 3.7028 -1.1992 4.7120 53 1 1.3674 -0.3709 4.6300 54 1 1.5464 -1.8711 3.6893 55 1 1.5783 0.9601 2.5468 56 1 0.2228 -0.1884 2.4372 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687263627.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 18 2020 07:20:04 Heat of formation + Delta-G solvation = 22.837093 kcal Electronic energy + Delta-G solvation = -34288.240696 eV Core-core repulsion = 30470.724862 eV Total energy + Delta-G solvation = -3817.515834 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.233 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.37870 -40.63372 -39.49587 -37.29747 -35.45449 -33.53849 -32.86714 -31.83155 -31.21832 -31.08114 -30.71614 -27.27048 -26.67095 -25.30843 -24.75780 -23.48625 -23.26882 -22.23882 -21.84282 -21.15870 -20.30550 -19.50797 -18.19816 -17.65375 -17.41863 -17.09594 -16.36574 -16.24922 -16.01328 -15.95744 -15.59821 -15.37160 -15.16686 -14.99553 -14.82043 -14.73240 -14.49790 -14.27648 -14.08441 -13.81154 -13.56017 -13.30906 -13.25839 -13.17709 -12.99994 -12.94060 -12.78052 -12.52508 -12.24905 -12.16718 -12.12101 -12.02025 -11.84990 -11.67089 -11.58778 -11.54276 -11.41544 -11.25898 -11.11387 -10.92006 -10.71119 -10.46388 -9.78909 -9.74337 -9.33373 -8.69706 0.42215 0.50710 1.19822 1.38507 1.44852 1.90061 2.76088 3.00499 3.20734 3.40509 3.63287 3.73320 3.81623 3.84221 3.93720 3.94330 4.03238 4.08021 4.16155 4.26300 4.27029 4.30433 4.31986 4.41265 4.44600 4.48861 4.53896 4.56626 4.59825 4.63217 4.66893 4.69143 4.73963 4.78386 4.80111 4.86547 4.87467 4.92564 5.01927 5.08015 5.11461 5.13140 5.16597 5.19278 5.22711 5.25774 5.36696 5.40067 5.41568 5.43099 5.45873 5.53282 5.58330 5.64084 5.70596 5.73869 5.93777 6.05703 6.13244 6.32842 6.34657 6.64808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.136 4.136 3 Si 0.950 3.050 4 H -0.250 1.250 5 H -0.290 1.290 6 H -0.247 1.247 7 C 0.097 3.903 8 N -0.497 5.497 9 C 0.063 3.937 10 C 0.061 3.939 11 H 0.098 0.902 12 C -0.126 4.126 13 C -0.128 4.128 14 C 0.059 3.941 15 H 0.091 0.909 16 C 0.052 3.948 17 N -0.504 5.504 18 C 0.086 3.914 19 C -0.084 4.084 20 C -0.121 4.121 21 C -0.129 4.129 22 C -0.130 4.130 23 C -0.131 4.131 24 C -0.113 4.113 25 C -0.118 4.118 26 C -0.103 4.103 27 C -0.118 4.118 28 C -0.104 4.104 29 C -0.127 4.127 30 H 0.380 0.620 31 H 0.111 0.889 32 H 0.038 0.962 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.049 0.951 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.047 0.953 42 H 0.125 0.875 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.132 0.868 46 H 0.123 0.877 47 H 0.072 0.928 48 H 0.066 0.934 49 H 0.055 0.945 50 H 0.073 0.927 51 H 0.054 0.946 52 H 0.058 0.942 53 H 0.057 0.943 54 H 0.071 0.929 55 H 0.069 0.931 56 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.073 -0.175 2.193 2.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.249 4.249 3 Si 0.776 3.224 4 H -0.174 1.174 5 H -0.217 1.217 6 H -0.170 1.170 7 C 0.007 3.993 8 N -0.221 5.221 9 C -0.066 4.066 10 C -0.048 4.048 11 H 0.116 0.884 12 C -0.165 4.165 13 C -0.167 4.167 14 C -0.050 4.050 15 H 0.109 0.891 16 C -0.076 4.076 17 N -0.227 5.227 18 C -0.041 4.041 19 C -0.085 4.085 20 C -0.139 4.139 21 C -0.147 4.147 22 C -0.149 4.149 23 C -0.149 4.149 24 C -0.132 4.132 25 C -0.156 4.156 26 C -0.140 4.140 27 C -0.155 4.155 28 C -0.142 4.142 29 C -0.164 4.164 30 H 0.230 0.770 31 H 0.129 0.871 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.065 0.935 42 H 0.143 0.857 43 H 0.153 0.847 44 H 0.152 0.848 45 H 0.150 0.850 46 H 0.141 0.859 47 H 0.091 0.909 48 H 0.084 0.916 49 H 0.074 0.926 50 H 0.092 0.908 51 H 0.073 0.927 52 H 0.077 0.923 53 H 0.076 0.924 54 H 0.090 0.910 55 H 0.088 0.912 56 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.472 0.471 1.593 2.219 hybrid contribution -0.371 -0.264 0.199 0.497 sum 1.101 0.207 1.792 2.113 Atomic orbital electron populations 1.86509 1.17846 1.80634 1.50343 1.26777 0.85192 1.10034 1.02923 0.85778 0.80209 0.76781 0.79635 1.17363 1.21667 1.17027 1.21467 0.95855 0.88398 0.93595 1.62200 1.14377 1.11974 1.33542 1.22303 1.00035 0.93190 0.91030 1.23233 0.87657 0.96272 0.97594 0.88360 1.22632 0.99234 0.99366 0.95254 1.22673 0.95525 0.99263 0.99200 1.23290 0.98813 0.95533 0.87350 0.89100 1.22547 0.88545 0.94530 1.01957 1.65826 1.09198 1.21453 1.26213 1.21099 0.90644 0.90791 1.01584 1.19822 0.95299 0.99528 0.93814 1.21200 0.95902 1.00302 0.96532 1.21388 0.93336 1.00028 0.99927 1.21432 1.00663 0.99535 0.93232 1.21408 0.95728 0.99909 0.97811 1.21183 0.93361 0.99350 0.99300 1.21735 0.93173 1.00899 0.99797 1.21317 0.98771 1.00648 0.93288 1.21500 0.95712 1.00379 0.97939 1.21358 0.95414 1.01278 0.96118 1.21853 1.00812 0.99553 0.94210 0.77044 0.87147 0.94435 0.89567 0.92991 0.90310 0.90597 0.93268 0.90250 0.91519 0.90136 0.93481 0.85722 0.84695 0.84762 0.84999 0.85875 0.90893 0.91587 0.92590 0.90844 0.92741 0.92306 0.92388 0.91024 0.91218 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.26 9.66 -148.98 -1.44 -1.70 16 2 C -0.14 0.16 1.77 71.98 0.13 0.29 16 3 Si 0.95 0.13 24.44 68.60 1.68 1.81 16 4 H -0.25 -0.10 6.39 99.48 0.64 0.54 16 5 H -0.29 -1.62 7.11 99.48 0.71 -0.91 16 6 H -0.25 0.09 6.43 99.48 0.64 0.72 16 7 C 0.10 -0.27 0.02 3.53 0.00 -0.27 16 8 N -0.50 1.13 1.97 -843.38 -1.66 -0.53 16 9 C 0.06 -0.06 4.24 86.55 0.37 0.30 16 10 C 0.06 -0.03 3.75 45.38 0.17 0.14 16 11 H 0.10 -0.12 8.13 -2.39 -0.02 -0.14 16 12 C -0.13 0.14 5.41 31.62 0.17 0.32 16 13 C -0.13 0.08 5.49 31.62 0.17 0.25 16 14 C 0.06 0.04 3.29 45.36 0.15 0.19 16 15 H 0.09 0.26 5.38 -2.39 -0.01 0.25 16 16 C 0.05 -0.01 3.65 86.53 0.32 0.30 16 17 N -0.50 -0.85 5.15 -830.96 -4.28 -5.14 16 18 C 0.09 0.14 5.09 85.56 0.44 0.58 16 19 C -0.08 -0.28 4.65 -19.87 -0.09 -0.37 16 20 C -0.12 -0.28 7.58 22.27 0.17 -0.12 16 21 C -0.13 -0.25 10.05 22.27 0.22 -0.03 16 22 C -0.13 -0.30 10.05 22.27 0.22 -0.08 16 23 C -0.13 -0.41 10.05 22.27 0.22 -0.19 16 24 C -0.11 -0.46 9.70 22.27 0.22 -0.25 16 25 C -0.12 0.33 3.88 30.59 0.12 0.45 16 26 C -0.10 0.27 5.77 30.60 0.18 0.44 16 27 C -0.12 0.29 5.92 30.60 0.18 0.47 16 28 C -0.10 0.32 5.55 30.61 0.17 0.49 16 29 C -0.13 0.47 3.36 30.61 0.10 0.57 16 30 H 0.38 -1.83 6.83 -74.06 -0.51 -2.33 16 31 H 0.11 -0.04 5.79 -2.39 -0.01 -0.06 16 32 H 0.04 0.08 6.08 -2.38 -0.01 0.07 16 33 H 0.09 -0.24 6.50 -2.39 -0.02 -0.25 16 34 H 0.05 -0.03 7.88 -2.39 -0.02 -0.05 16 35 H 0.08 -0.06 7.48 -2.38 -0.02 -0.08 16 36 H 0.08 0.00 7.20 -2.39 -0.02 -0.02 16 37 H 0.05 0.00 7.33 -2.39 -0.02 -0.02 16 38 H 0.08 -0.11 5.56 -2.38 -0.01 -0.12 16 39 H 0.07 0.23 5.29 -2.39 -0.01 0.22 16 40 H 0.08 0.12 8.09 -2.39 -0.02 0.10 16 41 H 0.05 0.06 6.65 -2.39 -0.02 0.05 16 42 H 0.12 0.04 7.23 -2.91 -0.02 0.02 16 43 H 0.14 -0.23 8.06 -2.91 -0.02 -0.25 16 44 H 0.13 -0.17 8.06 -2.91 -0.02 -0.20 16 45 H 0.13 0.00 8.06 -2.91 -0.02 -0.02 16 46 H 0.12 0.35 8.06 -2.91 -0.02 0.33 16 47 H 0.07 -0.25 6.56 -2.39 -0.02 -0.26 16 48 H 0.07 -0.15 5.30 -2.39 -0.01 -0.17 16 49 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 50 H 0.07 -0.10 7.28 -2.38 -0.02 -0.12 16 51 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 52 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 53 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 54 H 0.07 -0.12 6.29 -2.39 -0.02 -0.13 16 55 H 0.07 -0.24 5.88 -2.39 -0.01 -0.26 16 56 H 0.08 -0.38 4.90 -2.39 -0.01 -0.40 16 Total: 0.00 -5.07 372.84 -1.10 -6.17 By element: Atomic # 1 Polarization: -5.09 SS G_CDS: 0.99 Total: -4.10 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 3.62 Total: 3.49 kcal Atomic # 7 Polarization: 0.28 SS G_CDS: -5.95 Total: -5.67 kcal Atomic # 8 Polarization: -0.26 SS G_CDS: -1.44 Total: -1.70 kcal Atomic # 14 Polarization: 0.13 SS G_CDS: 1.68 Total: 1.81 kcal Total: -5.07 -1.10 -6.17 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687263627.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.011 kcal (2) G-P(sol) polarization free energy of solvation -5.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds