Wall clock time and date at job start Wed Mar 18 2020 02:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47282 * 2 1 4 4 C 1.52998 * 115.55100 * 65.29910 * 3 2 1 5 5 N 1.46499 * 109.47416 * 65.14968 * 4 3 2 6 6 C 1.34771 * 119.99865 * 175.06625 * 5 4 3 7 7 O 1.21625 * 120.00336 * 0.02562 * 6 5 4 8 8 C 1.47294 * 119.99801 * 180.02562 * 6 5 4 9 9 C 1.39876 * 120.04777 * 359.97438 * 8 6 5 10 10 C 1.36422 * 120.18632 * 179.76345 * 9 8 6 11 11 C 1.39919 * 120.28287 * 0.51792 * 10 9 8 12 12 C 1.47563 * 119.96121 * 179.76059 * 11 10 9 13 13 C 1.36107 * 125.94107 * 359.72910 * 12 11 10 14 14 C 1.40806 * 106.73189 * 180.28371 * 13 12 11 15 15 C 1.34840 * 107.04864 * 359.56571 * 14 13 12 16 16 C 1.50692 * 125.65385 * 180.15681 * 15 14 13 17 17 O 1.42904 * 109.47138 * 300.30080 * 16 15 14 18 18 Si 1.86306 * 109.47251 * 180.29941 * 16 15 14 19 19 H 1.48504 * 109.46743 * 59.99995 * 18 16 15 20 20 H 1.48497 * 109.46762 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46954 * 299.99879 * 18 16 15 22 22 O 1.34236 * 108.68931 * 0.43693 * 15 14 13 23 23 C 1.39609 * 120.08246 * 359.48396 * 11 10 9 24 24 C 1.38276 * 119.81478 * 0.25168 * 23 11 10 25 25 O 1.35684 * 120.13728 * 180.02562 * 24 23 11 26 26 C 1.53002 * 117.49716 * 210.96575 * 3 2 1 27 27 C 1.53004 * 117.49867 * 279.62424 * 3 2 1 28 28 H 1.08999 * 109.47144 * 174.91583 * 1 2 3 29 29 H 1.08992 * 109.46813 * 294.91873 * 1 2 3 30 30 H 1.08998 * 109.46586 * 54.92201 * 1 2 3 31 31 H 1.09000 * 109.47452 * 239.99369 * 2 1 3 32 32 H 1.09003 * 109.47136 * 119.99936 * 2 1 3 33 33 H 1.09001 * 109.47017 * 305.15028 * 4 3 2 34 34 H 1.09001 * 109.46686 * 185.15618 * 4 3 2 35 35 H 0.96996 * 119.99669 * 355.07860 * 5 4 3 36 36 H 1.08000 * 119.90569 * 0.02562 * 9 8 6 37 37 H 1.08006 * 119.85821 * 180.25822 * 10 9 8 38 38 H 1.07997 * 126.63721 * 0.02562 * 13 12 11 39 39 H 1.07995 * 126.47611 * 179.73463 * 14 13 12 40 40 H 1.08999 * 109.47503 * 60.29895 * 16 15 14 41 41 H 0.96701 * 113.99779 * 300.00101 * 17 16 15 42 42 H 1.07998 * 120.09386 * 180.27937 * 23 11 10 43 43 H 0.96706 * 113.99517 * 90.00405 * 25 24 23 44 44 H 1.08999 * 117.49841 * 215.00146 * 26 3 2 45 45 H 1.09002 * 117.50182 * 0.02562 * 26 3 2 46 46 H 1.09001 * 117.49506 * 359.97438 * 27 3 2 47 47 H 1.08998 * 117.49739 * 144.97360 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.7162 2.2569 1.2540 5 7 2.4131 1.6784 2.4055 6 6 2.3560 2.2906 3.6049 7 8 1.7255 3.3229 3.7314 8 6 3.0571 1.7093 4.7625 9 6 3.7821 0.5218 4.6182 10 6 4.4366 -0.0165 5.6874 11 6 4.3788 0.6087 6.9378 12 6 5.0851 0.0174 8.0907 13 6 5.8197 -1.1283 8.0756 14 6 6.3025 -1.3175 9.3847 15 6 5.8525 -0.2845 10.1252 16 6 6.1265 -0.0695 11.5913 17 8 5.6261 -1.1809 12.3374 18 14 5.2813 1.4907 12.1590 19 1 3.8174 1.3676 11.9419 20 1 5.5509 1.7020 13.6039 21 1 5.8014 2.6455 11.3837 22 8 5.1147 0.5175 9.3413 23 6 3.6586 1.7943 7.0948 24 6 2.9984 2.3461 6.0124 25 8 2.2969 3.4984 6.1575 26 6 3.3727 1.7205 -0.6983 27 6 2.0616 2.1841 -1.3381 28 1 -0.3633 -1.0236 -0.0911 29 1 -0.3633 0.4330 0.9319 30 1 -0.3632 0.5906 -0.8410 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 0.6411 2.2371 1.4325 34 1 2.0420 3.2873 1.1121 35 1 2.9158 0.8551 2.3047 36 1 3.8274 0.0319 3.6568 37 1 4.9982 -0.9314 5.5690 38 1 5.9946 -1.7706 7.2251 39 1 6.9193 -2.1341 9.7297 40 1 7.2010 0.0208 11.7507 41 1 4.6741 -1.3215 12.2427 42 1 3.6177 2.2794 8.0588 43 1 2.8163 4.2980 5.9959 44 1 4.0187 2.4837 -0.2643 45 1 3.8859 0.8759 -1.1581 46 1 1.7129 1.6442 -2.2184 47 1 1.8446 3.2522 -1.3250 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465603146.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 18 2020 02:39:35 Heat of formation + Delta-G solvation = -55.653655 kcal Electronic energy + Delta-G solvation = -29447.521595 eV Core-core repulsion = 25257.217296 eV Total energy + Delta-G solvation = -4190.304299 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.158 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.76407 -41.55075 -40.16185 -39.01354 -38.13035 -37.82449 -35.17398 -34.24901 -33.41292 -32.90590 -31.35079 -30.61379 -28.30337 -26.71628 -24.97368 -24.37185 -24.08170 -23.35530 -22.43889 -21.85590 -21.27453 -20.39484 -19.61375 -18.69671 -18.53724 -17.73047 -17.54527 -17.29921 -16.80504 -16.69854 -16.29163 -16.19430 -15.94439 -15.81815 -15.49456 -15.26037 -14.95248 -14.84565 -14.67720 -14.24042 -14.04636 -13.99229 -13.89503 -13.66991 -13.61266 -13.33094 -13.22063 -12.91771 -12.76464 -12.54580 -12.27294 -12.23488 -12.06175 -11.86795 -11.80004 -11.31392 -11.14718 -11.02398 -10.79335 -10.67495 -10.56889 -10.06576 -9.97197 -9.02801 -0.79984 0.08954 0.63657 0.97246 1.33577 1.38426 1.46533 1.69018 1.87285 1.98853 2.00494 2.63004 2.74637 3.00124 3.18998 3.33747 3.46607 3.52733 3.63049 3.65299 3.77086 3.84289 3.85667 3.89191 3.92806 4.14649 4.30033 4.32383 4.35832 4.43637 4.51404 4.54218 4.61411 4.62394 4.65358 4.74736 4.77845 4.83727 4.86961 4.95708 4.97978 5.04366 5.06888 5.08832 5.12815 5.15494 5.30460 5.36788 5.38621 5.44640 5.93408 6.31872 6.46941 6.67399 7.23320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 C -0.147 4.147 4 C 0.159 3.841 5 N -0.723 5.723 6 C 0.557 3.443 7 O -0.519 6.519 8 C -0.164 4.164 9 C -0.064 4.064 10 C -0.116 4.116 11 C 0.030 3.970 12 C 0.022 3.978 13 C -0.176 4.176 14 C -0.171 4.171 15 C -0.047 4.047 16 C -0.040 4.040 17 O -0.528 6.528 18 Si 0.952 3.048 19 H -0.248 1.248 20 H -0.244 1.244 21 H -0.246 1.246 22 O -0.167 6.167 23 C -0.142 4.142 24 C 0.178 3.822 25 O -0.474 6.474 26 C -0.170 4.170 27 C -0.159 4.159 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.399 0.601 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.137 0.863 41 H 0.382 0.618 42 H 0.142 0.858 43 H 0.399 0.601 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.312 -3.233 -2.463 5.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.122 4.122 3 C -0.148 4.148 4 C 0.036 3.964 5 N -0.376 5.376 6 C 0.344 3.656 7 O -0.395 6.395 8 C -0.168 4.168 9 C -0.083 4.083 10 C -0.134 4.134 11 C 0.029 3.971 12 C -0.027 4.027 13 C -0.195 4.195 14 C -0.190 4.190 15 C -0.097 4.097 16 C -0.151 4.151 17 O -0.334 6.334 18 Si 0.772 3.228 19 H -0.171 1.171 20 H -0.167 1.167 21 H -0.169 1.169 22 O -0.064 6.064 23 C -0.160 4.160 24 C 0.132 3.868 25 O -0.285 6.285 26 C -0.207 4.207 27 C -0.197 4.197 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.235 0.765 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.174 0.826 39 H 0.175 0.825 40 H 0.155 0.845 41 H 0.230 0.770 42 H 0.160 0.840 43 H 0.257 0.743 44 H 0.114 0.886 45 H 0.116 0.884 46 H 0.118 0.882 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.435 -1.853 -1.709 3.505 hybrid contribution 0.415 -0.712 -0.663 1.058 sum 2.850 -2.565 -2.372 4.509 Atomic orbital electron populations 1.21751 0.95078 1.01873 1.02281 1.21044 0.96395 0.92673 1.02131 1.21729 1.02428 0.97062 0.93559 1.20812 0.97267 0.96079 0.82252 1.45853 1.54180 1.28611 1.09003 1.17957 0.80846 0.84339 0.82423 1.90852 1.41412 1.23070 1.84208 1.20492 1.03476 0.98731 0.94062 1.20816 0.94599 0.93742 0.99118 1.20698 1.01027 1.00903 0.90741 1.17755 0.95515 0.93849 0.89951 1.20316 1.03472 0.95776 0.83165 1.21918 1.01049 0.97728 0.98855 1.21574 1.04269 1.00489 0.92694 1.23058 0.98766 0.93062 0.94859 1.24359 1.05988 1.01238 0.83475 1.86574 1.28915 1.49762 1.68103 0.85592 0.80525 0.75415 0.81283 1.17061 1.16684 1.16918 1.83940 1.57243 1.46554 1.18659 1.21582 0.97789 0.96714 0.99956 1.18279 0.89688 0.88759 0.90103 1.84778 1.38084 1.13950 1.91737 1.23109 0.90438 1.03668 1.03533 1.23022 1.00935 1.00759 0.94980 0.92483 0.92534 0.92351 0.91418 0.91734 0.90777 0.91008 0.76512 0.84628 0.84305 0.82571 0.82495 0.84516 0.77043 0.83997 0.74261 0.88565 0.88403 0.88187 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.19 9.65 37.16 0.36 0.55 16 2 C -0.08 0.17 5.73 -26.73 -0.15 0.02 16 3 C -0.15 0.24 1.56 -154.51 -0.24 0.00 16 4 C 0.16 0.02 5.35 -4.04 -0.02 -0.01 16 5 N -0.72 0.11 5.42 -61.43 -0.33 -0.22 16 6 C 0.56 1.54 7.75 -12.58 -0.10 1.44 16 7 O -0.52 -3.36 15.14 -16.70 -0.25 -3.62 16 8 C -0.16 -0.23 5.89 -104.79 -0.62 -0.85 16 9 C -0.06 0.09 9.47 -39.62 -0.38 -0.29 16 10 C -0.12 0.15 9.48 -39.61 -0.38 -0.23 16 11 C 0.03 0.02 5.87 -104.95 -0.62 -0.60 16 12 C 0.02 0.03 7.02 -36.55 -0.26 -0.23 16 13 C -0.18 -0.01 10.26 -39.38 -0.40 -0.41 16 14 C -0.17 -0.05 10.76 -39.82 -0.43 -0.48 16 15 C -0.05 -0.03 6.22 -35.52 -0.22 -0.25 16 16 C -0.04 0.04 2.98 36.00 0.11 0.15 16 17 O -0.53 0.36 12.87 -35.23 -0.45 -0.10 16 18 Si 0.95 -0.54 27.38 -169.99 -4.65 -5.19 16 19 H -0.25 -0.12 7.11 56.52 0.40 0.28 16 20 H -0.24 -0.03 7.11 56.52 0.40 0.37 16 21 H -0.25 -0.14 7.11 56.52 0.40 0.26 16 22 O -0.17 -0.31 8.78 4.73 0.04 -0.27 16 23 C -0.14 -0.21 9.65 -39.06 -0.38 -0.58 16 24 C 0.18 0.40 6.71 -38.75 -0.26 0.14 16 25 O -0.47 -1.43 11.56 -40.71 -0.47 -1.90 16 26 C -0.17 0.33 9.94 -26.69 -0.27 0.06 16 27 C -0.16 0.26 9.94 -26.69 -0.27 -0.01 16 28 H 0.06 -0.08 8.14 -51.93 -0.42 -0.51 16 29 H 0.06 -0.02 7.23 -51.93 -0.38 -0.40 16 30 H 0.06 -0.06 8.14 -51.93 -0.42 -0.49 16 31 H 0.07 -0.15 8.09 -51.93 -0.42 -0.57 16 32 H 0.06 -0.17 7.49 -51.93 -0.39 -0.56 16 33 H 0.07 0.09 7.11 -51.93 -0.37 -0.28 16 34 H 0.07 0.08 8.09 -51.93 -0.42 -0.34 16 35 H 0.40 -1.04 5.84 -40.82 -0.24 -1.27 16 36 H 0.14 -0.59 6.38 -52.49 -0.33 -0.92 16 37 H 0.14 -0.51 6.95 -52.48 -0.36 -0.87 16 38 H 0.16 -0.38 7.24 -52.49 -0.38 -0.76 16 39 H 0.16 -0.16 8.06 -52.49 -0.42 -0.59 16 40 H 0.14 -0.36 7.96 -51.93 -0.41 -0.77 16 41 H 0.38 -1.39 8.70 45.56 0.40 -1.00 16 42 H 0.14 0.14 7.90 -52.49 -0.41 -0.27 16 43 H 0.40 -0.32 9.06 45.56 0.41 0.10 16 44 H 0.10 -0.15 8.14 -51.93 -0.42 -0.58 16 45 H 0.10 -0.24 8.14 -51.93 -0.42 -0.67 16 46 H 0.10 -0.20 8.14 -51.93 -0.42 -0.62 16 47 H 0.10 -0.15 8.14 -51.93 -0.42 -0.58 16 LS Contribution 391.65 15.07 5.90 5.90 Total: 0.00 -8.19 391.65 -9.80 -17.98 By element: Atomic # 1 Polarization: -5.97 SS G_CDS: -5.07 Total: -11.03 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -4.51 Total: -1.56 kcal Atomic # 7 Polarization: 0.11 SS G_CDS: -0.33 Total: -0.22 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -1.14 Total: -5.89 kcal Atomic # 14 Polarization: -0.54 SS G_CDS: -4.65 Total: -5.19 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -8.19 -9.80 -17.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465603146.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.670 kcal (2) G-P(sol) polarization free energy of solvation -8.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds