Wall clock time and date at job start Wed Mar 18 2020 02:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47282 * 2 1 4 4 C 1.52998 * 115.55100 * 65.29910 * 3 2 1 5 5 N 1.46499 * 109.47416 * 65.14968 * 4 3 2 6 6 C 1.34771 * 119.99865 * 175.06625 * 5 4 3 7 7 O 1.21625 * 120.00336 * 0.02562 * 6 5 4 8 8 C 1.47294 * 119.99801 * 180.02562 * 6 5 4 9 9 C 1.39876 * 120.04777 * 359.97438 * 8 6 5 10 10 C 1.36422 * 120.18632 * 179.76345 * 9 8 6 11 11 C 1.39919 * 120.28287 * 0.51792 * 10 9 8 12 12 C 1.47563 * 119.96121 * 179.76059 * 11 10 9 13 13 C 1.36107 * 125.94107 * 359.72910 * 12 11 10 14 14 C 1.40806 * 106.73189 * 180.28371 * 13 12 11 15 15 C 1.34840 * 107.04864 * 359.56571 * 14 13 12 16 16 C 1.50692 * 125.65385 * 180.15681 * 15 14 13 17 17 O 1.42904 * 109.47138 * 300.30080 * 16 15 14 18 18 Si 1.86306 * 109.47251 * 180.29941 * 16 15 14 19 19 H 1.48504 * 109.46743 * 59.99995 * 18 16 15 20 20 H 1.48497 * 109.46762 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46954 * 299.99879 * 18 16 15 22 22 O 1.34236 * 108.68931 * 0.43693 * 15 14 13 23 23 C 1.39609 * 120.08246 * 359.48396 * 11 10 9 24 24 C 1.38276 * 119.81478 * 0.25168 * 23 11 10 25 25 O 1.35684 * 120.13728 * 180.02562 * 24 23 11 26 26 C 1.53002 * 117.49716 * 210.96575 * 3 2 1 27 27 C 1.53004 * 117.49867 * 279.62424 * 3 2 1 28 28 H 1.08999 * 109.47144 * 174.91583 * 1 2 3 29 29 H 1.08992 * 109.46813 * 294.91873 * 1 2 3 30 30 H 1.08998 * 109.46586 * 54.92201 * 1 2 3 31 31 H 1.09000 * 109.47452 * 239.99369 * 2 1 3 32 32 H 1.09003 * 109.47136 * 119.99936 * 2 1 3 33 33 H 1.09001 * 109.47017 * 305.15028 * 4 3 2 34 34 H 1.09001 * 109.46686 * 185.15618 * 4 3 2 35 35 H 0.96996 * 119.99669 * 355.07860 * 5 4 3 36 36 H 1.08000 * 119.90569 * 0.02562 * 9 8 6 37 37 H 1.08006 * 119.85821 * 180.25822 * 10 9 8 38 38 H 1.07997 * 126.63721 * 0.02562 * 13 12 11 39 39 H 1.07995 * 126.47611 * 179.73463 * 14 13 12 40 40 H 1.08999 * 109.47503 * 60.29895 * 16 15 14 41 41 H 0.96701 * 113.99779 * 300.00101 * 17 16 15 42 42 H 1.07998 * 120.09386 * 180.27937 * 23 11 10 43 43 H 0.96706 * 113.99517 * 90.00405 * 25 24 23 44 44 H 1.08999 * 117.49841 * 215.00146 * 26 3 2 45 45 H 1.09002 * 117.50182 * 0.02562 * 26 3 2 46 46 H 1.09001 * 117.49506 * 359.97438 * 27 3 2 47 47 H 1.08998 * 117.49739 * 144.97360 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.7162 2.2569 1.2540 5 7 2.4131 1.6784 2.4055 6 6 2.3560 2.2906 3.6049 7 8 1.7255 3.3229 3.7314 8 6 3.0571 1.7093 4.7625 9 6 3.7821 0.5218 4.6182 10 6 4.4366 -0.0165 5.6874 11 6 4.3788 0.6087 6.9378 12 6 5.0851 0.0174 8.0907 13 6 5.8197 -1.1283 8.0756 14 6 6.3025 -1.3175 9.3847 15 6 5.8525 -0.2845 10.1252 16 6 6.1265 -0.0695 11.5913 17 8 5.6261 -1.1809 12.3374 18 14 5.2813 1.4907 12.1590 19 1 3.8174 1.3676 11.9419 20 1 5.5509 1.7020 13.6039 21 1 5.8014 2.6455 11.3837 22 8 5.1147 0.5175 9.3413 23 6 3.6586 1.7943 7.0948 24 6 2.9984 2.3461 6.0124 25 8 2.2969 3.4984 6.1575 26 6 3.3727 1.7205 -0.6983 27 6 2.0616 2.1841 -1.3381 28 1 -0.3633 -1.0236 -0.0911 29 1 -0.3633 0.4330 0.9319 30 1 -0.3632 0.5906 -0.8410 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 0.6411 2.2371 1.4325 34 1 2.0420 3.2873 1.1121 35 1 2.9158 0.8551 2.3047 36 1 3.8274 0.0319 3.6568 37 1 4.9982 -0.9314 5.5690 38 1 5.9946 -1.7706 7.2251 39 1 6.9193 -2.1341 9.7297 40 1 7.2010 0.0208 11.7507 41 1 4.6741 -1.3215 12.2427 42 1 3.6177 2.2794 8.0588 43 1 2.8163 4.2980 5.9959 44 1 4.0187 2.4837 -0.2643 45 1 3.8859 0.8759 -1.1581 46 1 1.7129 1.6442 -2.2184 47 1 1.8446 3.2522 -1.3250 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001465603146.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 18 2020 02:39:34 Heat of formation + Delta-G solvation = -53.654833 kcal Electronic energy + Delta-G solvation = -29447.434920 eV Core-core repulsion = 25257.217296 eV Total energy + Delta-G solvation = -4190.217624 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.158 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.76023 -41.64081 -40.16025 -39.06579 -38.11061 -37.85229 -35.31514 -34.24535 -33.40187 -32.77186 -31.36078 -30.60751 -28.32928 -26.69677 -24.85887 -24.37713 -24.06566 -23.21633 -22.44248 -21.91541 -21.31844 -20.36708 -19.61259 -18.69221 -18.54920 -17.73599 -17.55574 -17.34360 -16.84046 -16.67876 -16.33960 -16.24623 -15.95168 -15.75527 -15.47390 -15.33282 -14.95597 -14.74668 -14.59216 -14.29162 -13.99406 -13.95859 -13.87054 -13.63246 -13.61135 -13.39080 -13.10953 -12.85501 -12.74988 -12.38810 -12.30414 -12.15890 -12.08558 -11.95322 -11.71349 -11.23274 -11.14564 -11.03524 -10.77750 -10.70801 -10.54296 -10.16479 -9.99459 -9.02379 -0.82586 0.10172 0.62470 1.01949 1.34376 1.37954 1.46421 1.72012 1.86117 1.89695 1.95774 2.60438 2.84427 2.98472 3.28232 3.41040 3.54710 3.59807 3.66165 3.75242 3.84991 3.87717 3.96654 3.99336 4.00374 4.19795 4.34742 4.43517 4.45518 4.52287 4.57264 4.62453 4.66400 4.68383 4.76420 4.79133 4.81291 4.89815 5.02469 5.03322 5.07748 5.10555 5.15771 5.18335 5.23583 5.26004 5.31117 5.42078 5.43739 5.50453 5.95718 6.43916 6.52766 6.64709 7.12084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.082 4.082 3 C -0.143 4.143 4 C 0.161 3.839 5 N -0.706 5.706 6 C 0.554 3.446 7 O -0.567 6.567 8 C -0.179 4.179 9 C -0.050 4.050 10 C -0.108 4.108 11 C 0.026 3.974 12 C -0.001 4.001 13 C -0.168 4.168 14 C -0.178 4.178 15 C -0.057 4.057 16 C -0.030 4.030 17 O -0.537 6.537 18 Si 0.979 3.021 19 H -0.268 1.268 20 H -0.251 1.251 21 H -0.266 1.266 22 O -0.186 6.186 23 C -0.157 4.157 24 C 0.160 3.840 25 O -0.496 6.496 26 C -0.163 4.163 27 C -0.166 4.166 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.414 0.586 36 H 0.171 0.829 37 H 0.173 0.827 38 H 0.184 0.816 39 H 0.171 0.829 40 H 0.155 0.845 41 H 0.393 0.607 42 H 0.134 0.866 43 H 0.408 0.592 44 H 0.092 0.908 45 H 0.110 0.890 46 H 0.106 0.894 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.899 -5.824 -3.443 8.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.120 4.120 3 C -0.144 4.144 4 C 0.037 3.963 5 N -0.359 5.359 6 C 0.342 3.658 7 O -0.447 6.447 8 C -0.183 4.183 9 C -0.068 4.068 10 C -0.126 4.126 11 C 0.026 3.974 12 C -0.050 4.050 13 C -0.187 4.187 14 C -0.197 4.197 15 C -0.107 4.107 16 C -0.141 4.141 17 O -0.344 6.344 18 Si 0.803 3.197 19 H -0.192 1.192 20 H -0.175 1.175 21 H -0.191 1.191 22 O -0.084 6.084 23 C -0.175 4.175 24 C 0.114 3.886 25 O -0.309 6.309 26 C -0.199 4.199 27 C -0.204 4.204 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.252 0.748 36 H 0.189 0.811 37 H 0.190 0.810 38 H 0.201 0.799 39 H 0.189 0.811 40 H 0.173 0.827 41 H 0.243 0.757 42 H 0.152 0.848 43 H 0.268 0.732 44 H 0.111 0.889 45 H 0.128 0.872 46 H 0.125 0.875 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.034 -4.475 -2.703 6.603 hybrid contribution -0.087 0.098 -0.336 0.360 sum 3.948 -4.377 -3.038 6.631 Atomic orbital electron populations 1.21750 0.95912 1.01903 1.01485 1.21056 0.95610 0.92218 1.03093 1.21615 1.03067 0.97149 0.92550 1.20739 0.96441 0.95941 0.83155 1.45715 1.53455 1.28661 1.08070 1.18244 0.80334 0.83843 0.83344 1.90822 1.43651 1.25220 1.84986 1.20511 1.04597 1.00045 0.93112 1.21166 0.92740 0.92256 1.00660 1.21061 1.00465 1.01513 0.89518 1.17972 0.95072 0.93508 0.90890 1.20577 1.04612 0.96665 0.83114 1.22277 0.99669 0.97156 0.99583 1.21845 1.04351 1.00643 0.92863 1.23403 0.98645 0.93200 0.95415 1.24313 1.06810 1.00334 0.82646 1.86547 1.30134 1.49631 1.68092 0.85198 0.79074 0.75264 0.80149 1.19184 1.17500 1.19057 1.83933 1.57812 1.47342 1.19314 1.21548 0.98830 0.97634 0.99506 1.18484 0.90404 0.88771 0.90949 1.84730 1.39276 1.14929 1.91964 1.23141 0.90076 1.03834 1.02894 1.23085 1.01485 1.00641 0.95160 0.92075 0.93728 0.92730 0.90489 0.90671 0.92196 0.92372 0.74805 0.81127 0.81011 0.79853 0.81109 0.82719 0.75731 0.84846 0.73185 0.88938 0.87151 0.87540 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.42 9.65 71.98 0.69 1.11 16 2 C -0.08 0.44 5.73 30.59 0.18 0.62 16 3 C -0.14 0.53 1.56 -52.18 -0.08 0.45 16 4 C 0.16 0.17 5.35 86.38 0.46 0.63 16 5 N -0.71 0.20 5.42 -466.50 -2.53 -2.32 16 6 C 0.55 3.72 7.75 86.63 0.67 4.39 16 7 O -0.57 -8.83 15.14 16.88 0.26 -8.57 16 8 C -0.18 -0.61 5.89 -19.97 -0.12 -0.72 16 9 C -0.05 0.22 9.47 22.24 0.21 0.43 16 10 C -0.11 0.49 9.48 22.25 0.21 0.70 16 11 C 0.03 0.04 5.87 -20.08 -0.12 -0.08 16 12 C 0.00 0.00 7.02 24.24 0.17 0.17 16 13 C -0.17 0.28 10.26 22.40 0.23 0.51 16 14 C -0.18 0.13 10.76 22.12 0.24 0.37 16 15 C -0.06 -0.06 6.22 24.90 0.15 0.10 16 16 C -0.03 0.07 2.98 71.23 0.21 0.28 16 17 O -0.54 1.06 12.87 -148.98 -1.92 -0.86 16 18 Si 0.98 0.01 27.38 68.60 1.88 1.89 16 19 H -0.27 -0.80 7.11 99.48 0.71 -0.09 16 20 H -0.25 -0.26 7.11 99.48 0.71 0.44 16 21 H -0.27 -0.83 7.11 99.48 0.71 -0.12 16 22 O -0.19 -0.84 8.78 -6.00 -0.05 -0.90 16 23 C -0.16 -0.74 9.65 22.61 0.22 -0.53 16 24 C 0.16 1.05 6.71 22.81 0.15 1.20 16 25 O -0.50 -4.56 11.56 -69.03 -0.80 -5.35 16 26 C -0.16 0.79 9.94 30.62 0.30 1.10 16 27 C -0.17 0.57 9.94 30.62 0.30 0.88 16 28 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 29 H 0.04 -0.01 7.23 -2.39 -0.02 -0.03 16 30 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.08 -0.50 8.09 -2.39 -0.02 -0.52 16 32 H 0.07 -0.55 7.49 -2.39 -0.02 -0.57 16 33 H 0.06 0.25 7.11 -2.39 -0.02 0.23 16 34 H 0.06 0.23 8.09 -2.39 -0.02 0.21 16 35 H 0.41 -2.78 5.84 -92.71 -0.54 -3.33 16 36 H 0.17 -2.06 6.38 -2.91 -0.02 -2.08 16 37 H 0.17 -1.94 6.95 -2.91 -0.02 -1.96 16 38 H 0.18 -1.50 7.24 -2.91 -0.02 -1.52 16 39 H 0.17 -0.69 8.06 -2.91 -0.02 -0.71 16 40 H 0.16 -0.96 7.96 -2.39 -0.02 -0.98 16 41 H 0.39 -2.96 8.70 -74.06 -0.64 -3.60 16 42 H 0.13 0.70 7.90 -2.91 -0.02 0.68 16 43 H 0.41 0.81 9.06 -74.05 -0.67 0.14 16 44 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 45 H 0.11 -0.78 8.14 -2.39 -0.02 -0.80 16 46 H 0.11 -0.50 8.14 -2.39 -0.02 -0.51 16 47 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 Total: 0.00 -21.48 391.65 0.86 -20.62 By element: Atomic # 1 Polarization: -16.03 SS G_CDS: -0.07 Total: -16.10 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 4.09 Total: 11.61 kcal Atomic # 7 Polarization: 0.20 SS G_CDS: -2.53 Total: -2.32 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -2.51 Total: -15.68 kcal Atomic # 14 Polarization: 0.01 SS G_CDS: 1.88 Total: 1.89 kcal Total: -21.48 0.86 -20.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465603146.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.039 kcal (2) G-P(sol) polarization free energy of solvation -21.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds