Wall clock time and date at job start Wed Mar 18 2020 02:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47118 * 2 1 4 4 C 1.52999 * 115.55018 * 65.29546 * 3 2 1 5 5 N 1.46498 * 109.47267 * 65.15463 * 4 3 2 6 6 C 1.34776 * 120.00203 * 175.06822 * 5 4 3 7 7 O 1.21622 * 119.99721 * 359.97438 * 6 5 4 8 8 C 1.47299 * 120.00006 * 180.02562 * 6 5 4 9 9 C 1.39878 * 120.04494 * 359.97438 * 8 6 5 10 10 C 1.36420 * 120.18233 * 180.02562 * 9 8 6 11 11 C 1.39919 * 120.28187 * 359.95660 * 10 9 8 12 12 C 1.47575 * 119.95839 * 180.02562 * 11 10 9 13 13 C 1.36109 * 125.93959 * 359.97438 * 12 11 10 14 14 C 1.40798 * 106.72816 * 179.97438 * 13 12 11 15 15 C 1.34835 * 107.04980 * 0.02562 * 14 13 12 16 16 C 1.50700 * 125.64960 * 180.02562 * 15 14 13 17 17 O 1.42903 * 109.47397 * 300.00166 * 16 15 14 18 18 Si 1.86305 * 109.47103 * 179.97438 * 16 15 14 19 19 H 1.48505 * 109.46929 * 60.00244 * 18 16 15 20 20 H 1.48500 * 109.47306 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47064 * 300.00297 * 18 16 15 22 22 O 1.34231 * 108.69508 * 359.73763 * 15 14 13 23 23 C 1.39609 * 120.08798 * 0.02562 * 11 10 9 24 24 C 1.38274 * 119.81014 * 0.25507 * 23 11 10 25 25 O 1.35685 * 120.13347 * 179.74552 * 24 23 11 26 26 C 1.53001 * 117.49805 * 210.96797 * 3 2 1 27 27 C 1.53004 * 117.49600 * 279.62430 * 3 2 1 28 28 H 1.09000 * 109.46732 * 54.92166 * 1 2 3 29 29 H 1.08999 * 109.47002 * 174.91704 * 1 2 3 30 30 H 1.08997 * 109.47145 * 294.91892 * 1 2 3 31 31 H 1.08995 * 109.47380 * 239.99460 * 2 1 3 32 32 H 1.09003 * 109.47019 * 119.99656 * 2 1 3 33 33 H 1.09001 * 109.46992 * 305.14961 * 4 3 2 34 34 H 1.09003 * 109.46985 * 185.15325 * 4 3 2 35 35 H 0.97008 * 119.99582 * 355.06679 * 5 4 3 36 36 H 1.07996 * 119.90704 * 359.97438 * 9 8 6 37 37 H 1.08005 * 119.86052 * 179.97438 * 10 9 8 38 38 H 1.07995 * 126.63284 * 0.03187 * 13 12 11 39 39 H 1.08001 * 126.47296 * 179.97438 * 14 13 12 40 40 H 1.08993 * 109.47085 * 60.00056 * 16 15 14 41 41 H 0.96708 * 113.99660 * 300.00033 * 17 16 15 42 42 H 1.07995 * 120.09308 * 179.97438 * 23 11 10 43 43 H 1.08993 * 117.49782 * 215.00619 * 26 3 2 44 44 H 1.09007 * 117.49737 * 0.02562 * 26 3 2 45 45 H 1.09004 * 117.49645 * 359.97438 * 27 3 2 46 46 H 1.09001 * 117.49853 * 144.97305 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7161 2.2570 1.2540 5 7 2.4130 1.6786 2.4055 6 6 2.3559 2.2907 3.6049 7 8 1.7260 3.3234 3.7312 8 6 3.0571 1.7094 4.7626 9 6 3.7822 0.5220 4.6182 10 6 4.4323 -0.0191 5.6886 11 6 4.3796 0.6095 6.9376 12 6 5.0859 0.0182 8.0905 13 6 5.8199 -1.1279 8.0756 14 6 6.3090 -1.3130 9.3829 15 6 5.8546 -0.2827 10.1245 16 6 6.1306 -0.0666 11.5902 17 8 5.6319 -1.1777 12.3378 18 14 5.2858 1.4939 12.1577 19 1 3.8216 1.3704 11.9426 20 1 5.5582 1.7073 13.6018 21 1 5.8045 2.6482 11.3808 22 8 5.1210 0.5219 9.3395 23 6 3.6596 1.7952 7.0945 24 6 2.9944 2.3438 6.0135 25 8 2.2885 3.4932 6.1599 26 6 3.3727 1.7206 -0.6983 27 6 2.0616 2.1841 -1.3381 28 1 -0.3633 0.5906 -0.8410 29 1 -0.3633 -1.0236 -0.0910 30 1 -0.3633 0.4330 0.9320 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 0.6410 2.2371 1.4325 34 1 2.0419 3.2875 1.1122 35 1 2.9157 0.8551 2.3047 36 1 3.8268 0.0318 3.6570 37 1 4.9903 -0.9363 5.5714 38 1 5.9942 -1.7705 7.2253 39 1 6.9300 -2.1269 9.7268 40 1 7.2052 0.0245 11.7480 41 1 4.6797 -1.3190 12.2445 42 1 3.6185 2.2802 8.0586 43 1 4.0186 2.4838 -0.2643 44 1 3.8858 0.8760 -1.1582 45 1 1.7128 1.6442 -2.2184 46 1 1.8445 3.2522 -1.3251 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465603146.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 18 2020 02:39:57 Heat of formation + Delta-G solvation = -105.043196 kcal Electronic energy + Delta-G solvation = -29030.566456 eV Core-core repulsion = 24851.776205 eV Total energy + Delta-G solvation = -4178.790251 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.150 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.29194 -39.26215 -38.15018 -37.08816 -36.72140 -33.39659 -32.93965 -32.26939 -31.89326 -31.20777 -29.17497 -27.56863 -26.55760 -25.03125 -23.91480 -22.45777 -22.13714 -21.90972 -20.28787 -19.98196 -19.24565 -18.80419 -17.62000 -16.80364 -16.42263 -16.16582 -15.63631 -15.29700 -15.13246 -14.72846 -14.66749 -13.95864 -13.92667 -13.81052 -13.61364 -13.55470 -12.93448 -12.81911 -12.77993 -12.58926 -12.24594 -12.20693 -12.11327 -12.03413 -11.88715 -11.56747 -11.48195 -11.24508 -11.20482 -11.07178 -10.97857 -10.70321 -10.22281 -10.05025 -9.83910 -9.76440 -9.66980 -9.43939 -8.63050 -8.62395 -8.23406 -7.23385 -7.12867 -5.77066 1.38043 2.01286 2.34995 2.38789 2.47577 2.88849 2.93927 3.11725 3.46946 3.56312 4.19266 4.23603 4.24941 4.59676 4.74112 4.82666 4.88388 4.94793 5.22706 5.34217 5.36652 5.38275 5.46485 5.48234 5.56179 5.58770 5.77947 5.83380 5.87001 5.91527 5.96296 6.00904 6.08759 6.10602 6.14092 6.15683 6.22024 6.25075 6.34829 6.48289 6.61663 6.71736 6.84080 7.08803 7.24380 7.28247 7.39624 7.45877 7.67316 7.90111 8.09798 8.57906 9.51358 9.77835 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.021236 B = 0.002220 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.216785 B =12611.124205 C =13363.297333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.084 4.084 3 C -0.138 4.138 4 C 0.163 3.837 5 N -0.745 5.745 6 C 0.564 3.436 7 O -0.524 6.524 8 C -0.296 4.296 9 C -0.030 4.030 10 C -0.239 4.239 11 C 0.022 3.978 12 C 0.074 3.926 13 C -0.217 4.217 14 C -0.166 4.166 15 C -0.084 4.084 16 C -0.031 4.031 17 O -0.535 6.535 18 Si 0.948 3.052 19 H -0.246 1.246 20 H -0.252 1.252 21 H -0.244 1.244 22 O -0.168 6.168 23 C -0.224 4.224 24 C 0.306 3.694 25 O -0.668 6.668 26 C -0.171 4.171 27 C -0.166 4.166 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.391 0.609 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.130 0.870 41 H 0.380 0.620 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.243 -10.538 -2.880 12.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.121 4.121 3 C -0.139 4.139 4 C 0.039 3.961 5 N -0.401 5.401 6 C 0.356 3.644 7 O -0.401 6.401 8 C -0.301 4.301 9 C -0.049 4.049 10 C -0.258 4.258 11 C 0.021 3.979 12 C 0.023 3.977 13 C -0.236 4.236 14 C -0.185 4.185 15 C -0.134 4.134 16 C -0.141 4.141 17 O -0.341 6.341 18 Si 0.769 3.231 19 H -0.169 1.169 20 H -0.176 1.176 21 H -0.167 1.167 22 O -0.065 6.065 23 C -0.244 4.244 24 C 0.226 3.774 25 O -0.584 6.584 26 C -0.208 4.208 27 C -0.204 4.204 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.225 0.775 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.167 0.833 39 H 0.165 0.835 40 H 0.147 0.853 41 H 0.228 0.772 42 H 0.125 0.875 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.591 -8.376 -2.167 9.795 hybrid contribution 0.217 -1.215 -0.613 1.378 sum 4.808 -9.591 -2.780 11.083 Atomic orbital electron populations 1.21733 0.95403 1.01278 1.02336 1.21019 0.96162 0.93069 1.01884 1.21749 1.01668 0.96810 0.93631 1.20568 0.96960 0.95621 0.82934 1.45973 1.55979 1.29096 1.09093 1.18276 0.80424 0.83854 0.81828 1.90753 1.41997 1.23354 1.83948 1.20030 1.13017 1.01464 0.95611 1.20354 0.94287 0.93776 0.96452 1.19647 1.11052 1.03193 0.91909 1.17738 0.96481 0.94973 0.88679 1.21114 0.99856 0.93954 0.82738 1.21737 1.04116 0.99391 0.98342 1.21389 1.03957 1.00110 0.93088 1.22698 1.01655 0.94391 0.94647 1.24150 1.05125 1.00565 0.84306 1.86487 1.28816 1.50334 1.68450 0.85641 0.81292 0.76324 0.79846 1.16881 1.17562 1.16694 1.83969 1.57193 1.45965 1.19340 1.21563 1.05110 0.97656 1.00048 1.18661 0.83256 0.88048 0.87451 1.93790 1.50365 1.23186 1.91055 1.23057 0.90611 1.03503 1.03645 1.22981 1.01460 1.00608 0.95318 0.92735 0.92889 0.92214 0.92018 0.91376 0.91982 0.92100 0.77505 0.88245 0.87817 0.83266 0.83526 0.85261 0.77224 0.87508 0.88559 0.88817 0.88738 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.65 37.16 0.36 -1.23 16 2 C -0.08 -0.90 5.73 -26.73 -0.15 -1.05 16 3 C -0.14 -1.67 1.56 -154.51 -0.24 -1.91 16 4 C 0.16 2.68 5.35 -4.04 -0.02 2.66 16 5 N -0.75 -14.12 5.42 -61.42 -0.33 -14.45 16 6 C 0.56 14.45 7.75 -12.58 -0.10 14.35 16 7 O -0.52 -16.01 15.14 -16.70 -0.25 -16.27 16 8 C -0.30 -7.78 5.89 -104.79 -0.62 -8.40 16 9 C -0.03 -0.63 9.47 -39.62 -0.38 -1.00 16 10 C -0.24 -4.93 9.48 -39.61 -0.38 -5.30 16 11 C 0.02 0.50 5.87 -104.95 -0.62 -0.12 16 12 C 0.07 1.47 7.02 -36.54 -0.26 1.21 16 13 C -0.22 -3.60 10.26 -39.38 -0.40 -4.00 16 14 C -0.17 -2.45 10.76 -39.82 -0.43 -2.88 16 15 C -0.08 -1.28 6.22 -35.52 -0.22 -1.50 16 16 C -0.03 -0.36 2.98 36.01 0.11 -0.25 16 17 O -0.54 -5.80 12.87 -35.23 -0.45 -6.25 16 18 Si 0.95 11.51 27.38 -169.99 -4.66 6.86 16 19 H -0.25 -3.43 7.11 56.52 0.40 -3.02 16 20 H -0.25 -2.79 7.11 56.52 0.40 -2.39 16 21 H -0.24 -3.48 7.11 56.52 0.40 -3.08 16 22 O -0.17 -3.19 8.78 4.75 0.04 -3.15 16 23 C -0.22 -6.00 9.65 -39.06 -0.38 -6.38 16 24 C 0.31 9.29 6.90 -38.76 -0.27 9.02 16 25 O -0.67 -24.06 16.87 -40.71 -0.69 -24.75 16 26 C -0.17 -1.87 9.94 -26.69 -0.27 -2.14 16 27 C -0.17 -1.72 9.94 -26.69 -0.27 -1.98 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.73 7.23 -51.93 -0.38 0.36 16 31 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 32 H 0.07 0.76 7.49 -51.93 -0.39 0.37 16 33 H 0.06 1.07 7.11 -51.93 -0.37 0.70 16 34 H 0.06 1.08 8.09 -51.93 -0.42 0.66 16 35 H 0.39 6.31 5.84 -40.82 -0.24 6.08 16 36 H 0.10 1.69 6.38 -52.49 -0.33 1.35 16 37 H 0.10 1.79 6.95 -52.48 -0.36 1.42 16 38 H 0.15 2.16 7.24 -52.49 -0.38 1.78 16 39 H 0.15 1.78 8.06 -52.49 -0.42 1.35 16 40 H 0.13 1.23 7.96 -51.93 -0.41 0.81 16 41 H 0.38 3.09 8.70 45.56 0.40 3.48 16 42 H 0.11 2.85 7.90 -52.49 -0.41 2.43 16 43 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 388.09 15.07 5.85 5.85 Total: -1.00 -37.77 388.09 -10.49 -48.26 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -5.48 Total: 14.81 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -4.52 Total: -10.91 kcal Atomic # 7 Polarization: -14.12 SS G_CDS: -0.33 Total: -14.45 kcal Atomic # 8 Polarization: -49.06 SS G_CDS: -1.35 Total: -50.42 kcal Atomic # 14 Polarization: 11.51 SS G_CDS: -4.66 Total: 6.86 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.77 -10.49 -48.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465603146.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.783 kcal (2) G-P(sol) polarization free energy of solvation -37.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds