Wall clock time and date at job start Wed Mar 18 2020 02:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47118 * 2 1 4 4 C 1.52999 * 115.55018 * 65.29546 * 3 2 1 5 5 N 1.46498 * 109.47267 * 65.15463 * 4 3 2 6 6 C 1.34776 * 120.00203 * 175.06822 * 5 4 3 7 7 O 1.21622 * 119.99721 * 359.97438 * 6 5 4 8 8 C 1.47299 * 120.00006 * 180.02562 * 6 5 4 9 9 C 1.39878 * 120.04494 * 359.97438 * 8 6 5 10 10 C 1.36420 * 120.18233 * 180.02562 * 9 8 6 11 11 C 1.39919 * 120.28187 * 359.95660 * 10 9 8 12 12 C 1.47575 * 119.95839 * 180.02562 * 11 10 9 13 13 C 1.36109 * 125.93959 * 359.97438 * 12 11 10 14 14 C 1.40798 * 106.72816 * 179.97438 * 13 12 11 15 15 C 1.34835 * 107.04980 * 0.02562 * 14 13 12 16 16 C 1.50700 * 125.64960 * 180.02562 * 15 14 13 17 17 O 1.42903 * 109.47397 * 300.00166 * 16 15 14 18 18 Si 1.86305 * 109.47103 * 179.97438 * 16 15 14 19 19 H 1.48505 * 109.46929 * 60.00244 * 18 16 15 20 20 H 1.48500 * 109.47306 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47064 * 300.00297 * 18 16 15 22 22 O 1.34231 * 108.69508 * 359.73763 * 15 14 13 23 23 C 1.39609 * 120.08798 * 0.02562 * 11 10 9 24 24 C 1.38274 * 119.81014 * 0.25507 * 23 11 10 25 25 O 1.35685 * 120.13347 * 179.74552 * 24 23 11 26 26 C 1.53001 * 117.49805 * 210.96797 * 3 2 1 27 27 C 1.53004 * 117.49600 * 279.62430 * 3 2 1 28 28 H 1.09000 * 109.46732 * 54.92166 * 1 2 3 29 29 H 1.08999 * 109.47002 * 174.91704 * 1 2 3 30 30 H 1.08997 * 109.47145 * 294.91892 * 1 2 3 31 31 H 1.08995 * 109.47380 * 239.99460 * 2 1 3 32 32 H 1.09003 * 109.47019 * 119.99656 * 2 1 3 33 33 H 1.09001 * 109.46992 * 305.14961 * 4 3 2 34 34 H 1.09003 * 109.46985 * 185.15325 * 4 3 2 35 35 H 0.97008 * 119.99582 * 355.06679 * 5 4 3 36 36 H 1.07996 * 119.90704 * 359.97438 * 9 8 6 37 37 H 1.08005 * 119.86052 * 179.97438 * 10 9 8 38 38 H 1.07995 * 126.63284 * 0.03187 * 13 12 11 39 39 H 1.08001 * 126.47296 * 179.97438 * 14 13 12 40 40 H 1.08993 * 109.47085 * 60.00056 * 16 15 14 41 41 H 0.96708 * 113.99660 * 300.00033 * 17 16 15 42 42 H 1.07995 * 120.09308 * 179.97438 * 23 11 10 43 43 H 1.08993 * 117.49782 * 215.00619 * 26 3 2 44 44 H 1.09007 * 117.49737 * 0.02562 * 26 3 2 45 45 H 1.09004 * 117.49645 * 359.97438 * 27 3 2 46 46 H 1.09001 * 117.49853 * 144.97305 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7161 2.2570 1.2540 5 7 2.4130 1.6786 2.4055 6 6 2.3559 2.2907 3.6049 7 8 1.7260 3.3234 3.7312 8 6 3.0571 1.7094 4.7626 9 6 3.7822 0.5220 4.6182 10 6 4.4323 -0.0191 5.6886 11 6 4.3796 0.6095 6.9376 12 6 5.0859 0.0182 8.0905 13 6 5.8199 -1.1279 8.0756 14 6 6.3090 -1.3130 9.3829 15 6 5.8546 -0.2827 10.1245 16 6 6.1306 -0.0666 11.5902 17 8 5.6319 -1.1777 12.3378 18 14 5.2858 1.4939 12.1577 19 1 3.8216 1.3704 11.9426 20 1 5.5582 1.7073 13.6018 21 1 5.8045 2.6482 11.3808 22 8 5.1210 0.5219 9.3395 23 6 3.6596 1.7952 7.0945 24 6 2.9944 2.3438 6.0135 25 8 2.2885 3.4932 6.1599 26 6 3.3727 1.7206 -0.6983 27 6 2.0616 2.1841 -1.3381 28 1 -0.3633 0.5906 -0.8410 29 1 -0.3633 -1.0236 -0.0910 30 1 -0.3633 0.4330 0.9320 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 0.6410 2.2371 1.4325 34 1 2.0419 3.2875 1.1122 35 1 2.9157 0.8551 2.3047 36 1 3.8268 0.0318 3.6570 37 1 4.9903 -0.9363 5.5714 38 1 5.9942 -1.7705 7.2253 39 1 6.9300 -2.1269 9.7268 40 1 7.2052 0.0245 11.7480 41 1 4.6797 -1.3190 12.2445 42 1 3.6185 2.2802 8.0586 43 1 4.0186 2.4838 -0.2643 44 1 3.8858 0.8760 -1.1582 45 1 1.7128 1.6442 -2.2184 46 1 1.8445 3.2522 -1.3251 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001465603146.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 18 2020 02:39:56 Heat of formation + Delta-G solvation = -133.488845 kcal Electronic energy + Delta-G solvation = -29031.799952 eV Core-core repulsion = 24851.776205 eV Total energy + Delta-G solvation = -4180.023747 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.150 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.62775 -40.91007 -39.55992 -38.65333 -37.90072 -35.23175 -34.70409 -33.88955 -32.88854 -32.69998 -30.62979 -29.56184 -28.02018 -26.37986 -24.79573 -23.91414 -23.41115 -23.14515 -21.79066 -21.67790 -20.87789 -19.98258 -18.81544 -18.35987 -17.67893 -17.43284 -17.01970 -16.66137 -16.56180 -16.09951 -15.70383 -15.57161 -15.47444 -15.26517 -14.98938 -14.66013 -14.49126 -14.29610 -14.03410 -13.92304 -13.76973 -13.66549 -13.65576 -13.30873 -13.07431 -12.99677 -12.72516 -12.37159 -12.34052 -12.13565 -12.04489 -11.98063 -11.72038 -11.64988 -11.14031 -10.91142 -10.87896 -10.62455 -10.56749 -10.27453 -9.94439 -9.47993 -8.86490 -7.97177 -0.29484 0.83954 1.04490 1.29766 1.33635 1.39108 1.73068 1.87674 1.93704 2.27677 2.29924 2.96151 3.35601 3.44053 3.55550 3.65235 3.78245 3.90891 3.96031 4.05295 4.09524 4.13707 4.29177 4.42265 4.48618 4.52586 4.57282 4.65576 4.68130 4.71759 4.75675 4.79258 4.83952 4.85401 4.96987 5.03615 5.04227 5.13023 5.24058 5.25347 5.28355 5.31226 5.45758 5.50545 5.59317 5.61799 5.66666 6.05457 6.16359 6.18696 6.54396 6.84620 7.55308 7.62375 Molecular weight = 344.15amu Principal moments of inertia in cm(-1) A = 0.021236 B = 0.002220 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.216785 B =12611.124205 C =13363.297333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.080 4.080 3 C -0.147 4.147 4 C 0.161 3.839 5 N -0.714 5.714 6 C 0.557 3.443 7 O -0.589 6.589 8 C -0.321 4.321 9 C -0.012 4.012 10 C -0.214 4.214 11 C 0.045 3.955 12 C 0.008 3.992 13 C -0.174 4.174 14 C -0.165 4.165 15 C -0.077 4.077 16 C -0.013 4.013 17 O -0.530 6.530 18 Si 0.964 3.036 19 H -0.284 1.284 20 H -0.224 1.224 21 H -0.285 1.285 22 O -0.199 6.199 23 C -0.276 4.276 24 C 0.260 3.740 25 O -0.768 6.768 26 C -0.164 4.164 27 C -0.154 4.154 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.031 0.969 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.040 0.960 35 H 0.409 0.591 36 H 0.157 0.843 37 H 0.163 0.837 38 H 0.183 0.817 39 H 0.186 0.814 40 H 0.165 0.835 41 H 0.392 0.608 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.854 -16.707 -4.415 19.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.148 4.148 4 C 0.038 3.962 5 N -0.369 5.369 6 C 0.349 3.651 7 O -0.470 6.470 8 C -0.326 4.326 9 C -0.031 4.031 10 C -0.232 4.232 11 C 0.045 3.955 12 C -0.041 4.041 13 C -0.193 4.193 14 C -0.183 4.183 15 C -0.127 4.127 16 C -0.125 4.125 17 O -0.337 6.337 18 Si 0.790 3.210 19 H -0.209 1.209 20 H -0.146 1.146 21 H -0.211 1.211 22 O -0.097 6.097 23 C -0.296 4.296 24 C 0.187 3.813 25 O -0.692 6.692 26 C -0.201 4.201 27 C -0.191 4.191 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.050 0.950 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.247 0.753 36 H 0.174 0.826 37 H 0.181 0.819 38 H 0.201 0.799 39 H 0.203 0.797 40 H 0.182 0.818 41 H 0.242 0.758 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.241 -14.636 -3.718 17.203 hybrid contribution -0.771 0.502 -0.034 0.921 sum 7.470 -14.134 -3.752 16.421 Atomic orbital electron populations 1.21739 0.95772 1.02117 1.01190 1.21041 0.95818 0.91755 1.03077 1.21602 1.03672 0.97446 0.92063 1.20672 0.95851 0.95640 0.84078 1.45619 1.54857 1.28779 1.07675 1.18444 0.79786 0.83319 0.83565 1.90714 1.44785 1.26295 1.85202 1.20275 1.14439 1.03440 0.94414 1.20850 0.91630 0.91279 0.99316 1.20354 1.08895 1.03893 0.90068 1.18073 0.93626 0.92520 0.91321 1.20882 1.03930 0.96522 0.82750 1.22204 1.00143 0.96867 1.00062 1.21806 1.03987 1.00621 0.91929 1.23613 0.99500 0.93688 0.95880 1.24112 1.06729 0.99567 0.82088 1.86485 1.30095 1.49338 1.67800 0.85464 0.78759 0.75947 0.80805 1.20898 1.14631 1.21080 1.83985 1.58354 1.47528 1.19828 1.21310 1.09107 1.00867 0.98325 1.19338 0.83890 0.87709 0.90338 1.93692 1.55597 1.27714 1.92205 1.23133 0.90148 1.03912 1.02878 1.23094 1.00755 1.00444 0.94830 0.92016 0.91366 0.94975 0.89175 0.91692 0.93365 0.94139 0.75349 0.82579 0.81929 0.79926 0.79694 0.81805 0.75830 0.90316 0.90076 0.86154 0.86106 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.65 71.98 0.69 -2.20 16 2 C -0.08 -1.44 5.73 30.60 0.18 -1.26 16 3 C -0.15 -3.26 1.56 -52.18 -0.08 -3.34 16 4 C 0.16 5.43 5.35 86.38 0.46 5.89 16 5 N -0.71 -27.22 5.42 -466.49 -2.53 -29.75 16 6 C 0.56 30.20 7.75 86.63 0.67 30.87 16 7 O -0.59 -39.35 15.14 16.89 0.26 -39.10 16 8 C -0.32 -17.62 5.89 -19.97 -0.12 -17.73 16 9 C -0.01 -0.49 9.47 22.24 0.21 -0.28 16 10 C -0.21 -8.01 9.48 22.25 0.21 -7.80 16 11 C 0.05 2.06 5.87 -20.08 -0.12 1.94 16 12 C 0.01 0.32 7.02 24.24 0.17 0.49 16 13 C -0.17 -4.85 10.26 22.40 0.23 -4.62 16 14 C -0.16 -3.94 10.76 22.11 0.24 -3.71 16 15 C -0.08 -2.13 6.22 24.90 0.15 -1.97 16 16 C -0.01 -0.26 2.98 71.24 0.21 -0.04 16 17 O -0.53 -9.27 12.87 -148.98 -1.92 -11.18 16 18 Si 0.96 23.49 27.38 68.60 1.88 25.36 16 19 H -0.28 -8.64 7.11 99.48 0.71 -7.93 16 20 H -0.22 -4.50 7.11 99.48 0.71 -3.79 16 21 H -0.29 -8.90 7.11 99.48 0.71 -8.19 16 22 O -0.20 -7.58 8.78 -5.93 -0.05 -7.64 16 23 C -0.28 -16.15 9.65 22.61 0.22 -15.94 16 24 C 0.26 17.31 6.90 22.80 0.16 17.47 16 25 O -0.77 -62.21 16.87 -69.04 -1.16 -63.37 16 26 C -0.16 -3.08 9.94 30.62 0.30 -2.77 16 27 C -0.15 -2.78 9.94 30.62 0.30 -2.47 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.03 0.78 7.23 -2.39 -0.02 0.76 16 31 H 0.09 1.18 8.09 -2.39 -0.02 1.16 16 32 H 0.06 1.21 7.49 -2.39 -0.02 1.19 16 33 H 0.05 1.77 7.11 -2.39 -0.02 1.75 16 34 H 0.04 1.53 8.09 -2.39 -0.02 1.51 16 35 H 0.41 12.22 5.84 -92.70 -0.54 11.68 16 36 H 0.16 4.41 6.38 -2.91 -0.02 4.39 16 37 H 0.16 4.29 6.95 -2.91 -0.02 4.27 16 38 H 0.18 3.79 7.24 -2.91 -0.02 3.77 16 39 H 0.19 3.08 8.06 -2.91 -0.02 3.05 16 40 H 0.16 2.28 7.96 -2.39 -0.02 2.26 16 41 H 0.39 5.07 8.70 -74.05 -0.64 4.43 16 42 H 0.08 4.82 7.90 -2.91 -0.02 4.79 16 43 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 45 H 0.12 1.60 8.14 -2.39 -0.02 1.59 16 46 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -100.37 388.09 1.17 -99.19 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: 0.60 Total: 33.96 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: 4.10 Total: -7.48 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: -2.53 Total: -29.75 kcal Atomic # 8 Polarization: -118.41 SS G_CDS: -2.88 Total: -121.29 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: 1.88 Total: 25.36 kcal Total: -100.37 1.17 -99.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465603146.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.297 kcal (2) G-P(sol) polarization free energy of solvation -100.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds