Wall clock time and date at job start Wed Mar 18 2020 03:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38241 * 119.97516 * 2 1 4 4 C 1.38290 * 120.11177 * 179.97438 * 3 2 1 5 5 C 1.38118 * 120.05496 * 359.68762 * 4 3 2 6 6 C 1.38753 * 119.94347 * 0.58659 * 5 4 3 7 7 O 1.35905 * 120.05600 * 179.69902 * 6 5 4 8 8 C 1.42907 * 116.99925 * 359.73611 * 7 6 5 9 9 C 1.53003 * 109.46988 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.46916 * 179.97438 * 9 8 7 11 11 N 1.46496 * 109.47315 * 179.97438 * 10 9 8 12 12 C 1.34769 * 120.00419 * 179.97438 * 11 10 9 13 13 O 1.21572 * 120.00160 * 0.02562 * 12 11 10 14 14 C 1.47720 * 120.00413 * 180.02562 * 12 11 10 15 15 C 1.39638 * 120.11434 * 0.02562 * 14 12 11 16 16 C 1.37863 * 119.87514 * 180.02562 * 15 14 12 17 17 C 1.38626 * 120.11888 * 359.97438 * 16 15 14 18 18 F 1.35104 * 119.87645 * 179.97438 * 17 16 15 19 19 C 1.38675 * 120.24566 * 0.02754 * 17 16 15 20 20 C 1.50696 * 119.94629 * 179.97438 * 19 17 16 21 21 O 1.42896 * 109.47220 * 194.99755 * 20 19 17 22 22 Si 1.86301 * 109.46719 * 314.99388 * 20 19 17 23 23 H 1.48506 * 109.47302 * 179.97438 * 22 20 19 24 24 H 1.48503 * 109.47334 * 60.00029 * 22 20 19 25 25 H 1.48500 * 109.47376 * 300.00026 * 22 20 19 26 26 C 1.37820 * 120.11642 * 0.24195 * 19 17 16 27 27 C 1.38169 * 119.96771 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47069 * 270.02186 * 1 2 3 29 29 H 1.09001 * 109.46900 * 30.01728 * 1 2 3 30 30 H 1.09004 * 109.47578 * 150.01722 * 1 2 3 31 31 H 1.08004 * 119.94237 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.96964 * 179.97438 * 4 3 2 33 33 H 1.08007 * 120.02945 * 180.32004 * 5 4 3 34 34 H 1.08997 * 109.47007 * 59.99046 * 8 7 6 35 35 H 1.08996 * 109.46453 * 299.99405 * 8 7 6 36 36 H 1.08999 * 109.46806 * 59.99927 * 9 8 7 37 37 H 1.08999 * 109.47035 * 299.99661 * 9 8 7 38 38 H 1.09006 * 109.47121 * 60.00105 * 10 9 8 39 39 H 1.09002 * 109.47312 * 300.00392 * 10 9 8 40 40 H 0.97004 * 119.99617 * 0.02562 * 11 10 9 41 41 H 1.07994 * 120.05973 * 359.97438 * 15 14 12 42 42 H 1.08004 * 119.93485 * 179.97438 * 16 15 14 43 43 H 1.08996 * 109.47524 * 74.99102 * 20 19 17 44 44 H 0.96708 * 114.00095 * 179.97438 * 21 20 19 45 45 H 1.07992 * 120.06048 * 179.72823 * 26 19 17 46 46 H 1.08003 * 120.03208 * 0.03920 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1975 0.0000 4 6 3.5806 1.2008 0.0005 5 6 4.2751 0.0070 0.0076 6 6 3.5843 -1.1963 0.0018 7 8 4.2655 -2.3723 0.0026 8 6 5.6925 -2.2955 0.0036 9 6 6.2793 -3.7085 0.0049 10 6 7.8070 -3.6262 0.0054 11 7 8.3689 -4.9791 0.0073 12 6 9.7053 -5.1538 0.0075 13 8 10.4445 -4.1887 0.0065 14 6 10.2719 -6.5180 0.0088 15 6 9.4251 -7.6284 0.0094 16 6 9.9592 -8.8993 0.0112 17 6 11.3342 -9.0761 0.0119 18 9 11.8523 -10.3238 0.0142 19 6 12.1797 -7.9769 0.0114 20 6 13.6734 -8.1768 0.0127 21 8 14.3179 -6.9498 0.3605 22 14 14.1231 -9.4888 1.2567 23 1 15.5949 -9.6863 1.2577 24 1 13.4533 -10.7640 0.8953 25 1 13.6795 -9.0624 2.6082 26 6 11.6565 -6.7019 0.0152 27 6 2.1972 -1.1970 0.0005 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5136 31 1 1.6563 2.1321 -0.0004 32 1 4.1178 2.1377 0.0001 33 1 5.3552 0.0101 0.0132 34 1 6.0270 -1.7625 0.8936 35 1 6.0281 -1.7631 -0.8864 36 1 5.9447 -4.2417 -0.8849 37 1 5.9434 -4.2405 0.8951 38 1 8.1419 -3.0928 0.8951 39 1 8.1425 -3.0943 -0.8849 40 1 7.7791 -5.7492 0.0077 41 1 8.3539 -7.4917 0.0093 42 1 9.3052 -9.7588 0.0121 43 1 13.9990 -8.4899 -0.9792 44 1 15.2832 -7.0047 0.3815 45 1 12.3158 -5.8466 0.0192 46 1 1.6571 -2.1323 0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001623534825.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 18 2020 03:19:41 Heat of formation + Delta-G solvation = -105.902120 kcal Electronic energy + Delta-G solvation = -28301.872577 eV Core-core repulsion = 23958.617557 eV Total energy + Delta-G solvation = -4343.255020 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.37346 -41.36642 -41.10385 -39.65230 -38.76246 -37.72021 -36.63961 -33.80284 -33.42019 -32.73181 -31.91487 -30.80600 -28.03077 -27.39789 -26.78971 -24.65637 -23.58251 -23.26056 -23.00015 -21.94137 -21.22182 -19.31220 -18.95021 -18.68795 -18.26441 -17.63592 -17.54967 -17.35883 -16.98490 -16.85372 -16.48224 -16.33394 -16.15625 -15.99479 -15.30950 -15.20481 -15.11994 -14.96686 -14.80496 -14.49894 -14.43196 -14.28169 -14.14780 -14.10469 -13.44368 -13.25356 -13.12386 -13.07408 -12.78248 -12.67871 -12.46738 -12.44907 -12.42679 -11.92973 -11.73916 -11.71815 -11.40108 -11.05170 -10.94729 -10.27289 -10.02174 -9.72140 -9.67011 -9.12742 -0.50881 0.00948 0.38253 0.52381 1.07837 1.41107 1.51206 1.66129 1.75259 1.94063 2.30366 2.60922 2.82221 2.84521 3.07110 3.38220 3.50507 3.66857 3.70007 3.73653 3.78599 3.87687 3.92112 3.96873 4.09940 4.12974 4.23706 4.24000 4.27274 4.32566 4.42285 4.44251 4.52722 4.58093 4.70180 4.76212 4.79217 4.81608 4.83406 4.87704 4.99204 5.06460 5.11860 5.16940 5.23301 5.36664 5.51145 5.59177 5.67512 5.83290 6.32620 6.43878 6.45631 7.09962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.047 4.047 3 C -0.159 4.159 4 C -0.076 4.076 5 C -0.215 4.215 6 C 0.133 3.867 7 O -0.315 6.315 8 C 0.063 3.937 9 C -0.132 4.132 10 C 0.123 3.877 11 N -0.727 5.727 12 C 0.563 3.437 13 O -0.527 6.527 14 C -0.147 4.147 15 C -0.060 4.060 16 C -0.152 4.152 17 C 0.115 3.885 18 F -0.122 7.122 19 C -0.119 4.119 20 C -0.079 4.079 21 O -0.543 6.543 22 Si 0.934 3.066 23 H -0.254 1.254 24 H -0.227 1.227 25 H -0.249 1.249 26 C -0.004 4.004 27 C -0.154 4.154 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.402 0.598 41 H 0.138 0.862 42 H 0.148 0.852 43 H 0.087 0.913 44 H 0.387 0.613 45 H 0.158 0.842 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.139 -1.574 -0.600 2.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.047 4.047 3 C -0.177 4.177 4 C -0.094 4.094 5 C -0.234 4.234 6 C 0.088 3.912 7 O -0.229 6.229 8 C -0.013 4.013 9 C -0.170 4.170 10 C -0.001 4.001 11 N -0.380 5.380 12 C 0.350 3.650 13 O -0.404 6.404 14 C -0.150 4.150 15 C -0.079 4.079 16 C -0.171 4.171 17 C 0.095 3.905 18 F -0.100 7.100 19 C -0.120 4.120 20 C -0.189 4.189 21 O -0.349 6.349 22 Si 0.754 3.246 23 H -0.178 1.178 24 H -0.149 1.149 25 H -0.172 1.172 26 C -0.023 4.023 27 C -0.173 4.173 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.238 0.762 41 H 0.156 0.844 42 H 0.166 0.834 43 H 0.104 0.896 44 H 0.235 0.765 45 H 0.176 0.824 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.070 -1.534 0.034 2.576 hybrid contribution 0.424 -0.261 -0.405 0.642 sum -1.646 -1.795 -0.371 2.463 Atomic orbital electron populations 1.20838 0.90551 1.03201 1.02776 1.19752 0.96220 0.92230 0.96500 1.21006 0.94207 0.97729 1.04757 1.20970 0.94223 0.97524 0.96654 1.21263 1.00314 0.92282 1.09530 1.18941 0.91681 0.84450 0.96142 1.86020 1.19728 1.28407 1.88726 1.22610 0.78600 0.97836 1.02213 1.21686 0.93844 0.96681 1.04787 1.21185 0.91657 0.83834 1.03408 1.45796 1.06747 1.09232 1.76224 1.18096 0.81968 0.88649 0.76299 1.90832 1.59101 1.41574 1.48858 1.19986 0.94431 0.92952 1.07665 1.21175 0.99852 0.91058 0.95767 1.21048 0.92899 0.98978 1.04185 1.17728 0.92121 0.79108 1.01543 1.91598 1.86328 1.38784 1.93286 1.19329 0.94447 0.92799 1.05390 1.24538 0.91282 0.95989 1.07055 1.86411 1.24425 1.31477 1.92622 0.86135 0.80742 0.78916 0.78805 1.17845 1.14934 1.17157 1.20982 0.93528 0.96990 0.90782 1.20309 0.90830 0.98738 1.07405 0.90700 0.91114 0.91204 0.85789 0.85620 0.85458 0.91416 0.91410 0.89791 0.89785 0.90651 0.90646 0.76244 0.84427 0.83405 0.89564 0.76478 0.82399 0.85207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.10 10.01 36.00 0.36 0.46 16 2 C -0.05 -0.06 5.88 -104.65 -0.62 -0.67 16 3 C -0.16 -0.17 9.70 -39.56 -0.38 -0.55 16 4 C -0.08 -0.07 10.04 -39.61 -0.40 -0.47 16 5 C -0.22 -0.28 9.04 -39.44 -0.36 -0.64 16 6 C 0.13 0.30 6.69 -39.22 -0.26 0.03 16 7 O -0.32 -0.51 10.14 -19.44 -0.20 -0.70 16 8 C 0.06 -0.08 4.74 37.16 0.18 0.10 16 9 C -0.13 0.36 5.70 -26.73 -0.15 0.21 16 10 C 0.12 -0.19 5.67 -4.05 -0.02 -0.21 16 11 N -0.73 0.88 5.51 -61.29 -0.34 0.55 16 12 C 0.56 1.16 7.77 -12.39 -0.10 1.07 16 13 O -0.53 -3.16 16.34 5.30 0.09 -3.07 16 14 C -0.15 -0.14 5.87 -104.96 -0.62 -0.75 16 15 C -0.06 0.10 9.54 -39.20 -0.37 -0.27 16 16 C -0.15 0.18 10.01 -39.58 -0.40 -0.21 16 17 C 0.11 0.07 6.67 -39.28 -0.26 -0.19 16 18 F -0.12 -0.15 12.82 2.25 0.03 -0.12 16 19 C -0.12 -0.15 5.15 -104.62 -0.54 -0.69 16 20 C -0.08 0.01 2.96 36.00 0.11 0.12 16 21 O -0.54 0.01 11.47 -35.23 -0.40 -0.39 16 22 Si 0.93 0.08 26.09 -169.99 -4.43 -4.35 16 23 H -0.25 0.01 7.11 56.52 0.40 0.41 16 24 H -0.23 -0.18 5.28 56.52 0.30 0.11 16 25 H -0.25 -0.50 7.11 56.52 0.40 -0.10 16 26 C 0.00 -0.01 8.91 -39.20 -0.35 -0.36 16 27 C -0.15 -0.31 9.64 -39.43 -0.38 -0.69 16 28 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 29 H 0.07 -0.11 8.09 -51.93 -0.42 -0.53 16 30 H 0.07 -0.10 8.09 -51.93 -0.42 -0.52 16 31 H 0.12 -0.07 8.06 -52.48 -0.42 -0.50 16 32 H 0.13 -0.12 8.06 -52.49 -0.42 -0.54 16 33 H 0.13 -0.06 6.30 -52.48 -0.33 -0.39 16 34 H 0.07 -0.13 7.65 -51.93 -0.40 -0.52 16 35 H 0.07 -0.13 7.67 -51.93 -0.40 -0.53 16 36 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 37 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 38 H 0.08 -0.06 8.14 -51.93 -0.42 -0.49 16 39 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 40 H 0.40 -1.63 6.50 -40.82 -0.27 -1.90 16 41 H 0.14 -0.69 6.40 -52.49 -0.34 -1.03 16 42 H 0.15 -0.50 8.06 -52.48 -0.42 -0.93 16 43 H 0.09 -0.16 7.96 -51.93 -0.41 -0.57 16 44 H 0.39 -1.70 8.74 45.56 0.40 -1.30 16 45 H 0.16 0.53 6.71 -52.49 -0.35 0.17 16 46 H 0.13 0.12 8.06 -52.48 -0.42 -0.30 16 LS Contribution 382.89 15.07 5.77 5.77 Total: 0.00 -8.17 382.89 -9.69 -17.85 By element: Atomic # 1 Polarization: -6.16 SS G_CDS: -5.64 Total: -11.80 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -4.56 Total: -3.73 kcal Atomic # 7 Polarization: 0.88 SS G_CDS: -0.34 Total: 0.55 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -0.51 Total: -4.17 kcal Atomic # 9 Polarization: -0.15 SS G_CDS: 0.03 Total: -0.12 kcal Atomic # 14 Polarization: 0.08 SS G_CDS: -4.43 Total: -4.35 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -8.17 -9.69 -17.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001623534825.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.051 kcal (2) G-P(sol) polarization free energy of solvation -8.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds