Wall clock time and date at job start Wed Mar 18 2020 03:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38241 * 119.97516 * 2 1 4 4 C 1.38290 * 120.11177 * 179.97438 * 3 2 1 5 5 C 1.38118 * 120.05496 * 359.68762 * 4 3 2 6 6 C 1.38753 * 119.94347 * 0.58659 * 5 4 3 7 7 O 1.35905 * 120.05600 * 179.69902 * 6 5 4 8 8 C 1.42907 * 116.99925 * 359.73611 * 7 6 5 9 9 C 1.53003 * 109.46988 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.46916 * 179.97438 * 9 8 7 11 11 N 1.46496 * 109.47315 * 179.97438 * 10 9 8 12 12 C 1.34769 * 120.00419 * 179.97438 * 11 10 9 13 13 O 1.21572 * 120.00160 * 0.02562 * 12 11 10 14 14 C 1.47720 * 120.00413 * 180.02562 * 12 11 10 15 15 C 1.39638 * 120.11434 * 0.02562 * 14 12 11 16 16 C 1.37863 * 119.87514 * 180.02562 * 15 14 12 17 17 C 1.38626 * 120.11888 * 359.97438 * 16 15 14 18 18 F 1.35104 * 119.87645 * 179.97438 * 17 16 15 19 19 C 1.38675 * 120.24566 * 0.02754 * 17 16 15 20 20 C 1.50696 * 119.94629 * 179.97438 * 19 17 16 21 21 O 1.42896 * 109.47220 * 194.99755 * 20 19 17 22 22 Si 1.86301 * 109.46719 * 314.99388 * 20 19 17 23 23 H 1.48506 * 109.47302 * 179.97438 * 22 20 19 24 24 H 1.48503 * 109.47334 * 60.00029 * 22 20 19 25 25 H 1.48500 * 109.47376 * 300.00026 * 22 20 19 26 26 C 1.37820 * 120.11642 * 0.24195 * 19 17 16 27 27 C 1.38169 * 119.96771 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47069 * 270.02186 * 1 2 3 29 29 H 1.09001 * 109.46900 * 30.01728 * 1 2 3 30 30 H 1.09004 * 109.47578 * 150.01722 * 1 2 3 31 31 H 1.08004 * 119.94237 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.96964 * 179.97438 * 4 3 2 33 33 H 1.08007 * 120.02945 * 180.32004 * 5 4 3 34 34 H 1.08997 * 109.47007 * 59.99046 * 8 7 6 35 35 H 1.08996 * 109.46453 * 299.99405 * 8 7 6 36 36 H 1.08999 * 109.46806 * 59.99927 * 9 8 7 37 37 H 1.08999 * 109.47035 * 299.99661 * 9 8 7 38 38 H 1.09006 * 109.47121 * 60.00105 * 10 9 8 39 39 H 1.09002 * 109.47312 * 300.00392 * 10 9 8 40 40 H 0.97004 * 119.99617 * 0.02562 * 11 10 9 41 41 H 1.07994 * 120.05973 * 359.97438 * 15 14 12 42 42 H 1.08004 * 119.93485 * 179.97438 * 16 15 14 43 43 H 1.08996 * 109.47524 * 74.99102 * 20 19 17 44 44 H 0.96708 * 114.00095 * 179.97438 * 21 20 19 45 45 H 1.07992 * 120.06048 * 179.72823 * 26 19 17 46 46 H 1.08003 * 120.03208 * 0.03920 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1975 0.0000 4 6 3.5806 1.2008 0.0005 5 6 4.2751 0.0070 0.0076 6 6 3.5843 -1.1963 0.0018 7 8 4.2655 -2.3723 0.0026 8 6 5.6925 -2.2955 0.0036 9 6 6.2793 -3.7085 0.0049 10 6 7.8070 -3.6262 0.0054 11 7 8.3689 -4.9791 0.0073 12 6 9.7053 -5.1538 0.0075 13 8 10.4445 -4.1887 0.0065 14 6 10.2719 -6.5180 0.0088 15 6 9.4251 -7.6284 0.0094 16 6 9.9592 -8.8993 0.0112 17 6 11.3342 -9.0761 0.0119 18 9 11.8523 -10.3238 0.0142 19 6 12.1797 -7.9769 0.0114 20 6 13.6734 -8.1768 0.0127 21 8 14.3179 -6.9498 0.3605 22 14 14.1231 -9.4888 1.2567 23 1 15.5949 -9.6863 1.2577 24 1 13.4533 -10.7640 0.8953 25 1 13.6795 -9.0624 2.6082 26 6 11.6565 -6.7019 0.0152 27 6 2.1972 -1.1970 0.0005 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8901 -0.5136 31 1 1.6563 2.1321 -0.0004 32 1 4.1178 2.1377 0.0001 33 1 5.3552 0.0101 0.0132 34 1 6.0270 -1.7625 0.8936 35 1 6.0281 -1.7631 -0.8864 36 1 5.9447 -4.2417 -0.8849 37 1 5.9434 -4.2405 0.8951 38 1 8.1419 -3.0928 0.8951 39 1 8.1425 -3.0943 -0.8849 40 1 7.7791 -5.7492 0.0077 41 1 8.3539 -7.4917 0.0093 42 1 9.3052 -9.7588 0.0121 43 1 13.9990 -8.4899 -0.9792 44 1 15.2832 -7.0047 0.3815 45 1 12.3158 -5.8466 0.0192 46 1 1.6571 -2.1323 0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001623534825.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 18 2020 03:19:39 Heat of formation + Delta-G solvation = -103.424468 kcal Electronic energy + Delta-G solvation = -28301.765138 eV Core-core repulsion = 23958.617557 eV Total energy + Delta-G solvation = -4343.147580 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 347.149 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -50.40355 -41.42600 -41.13129 -39.68376 -38.77443 -37.68950 -36.68826 -33.79387 -33.41901 -32.69791 -31.91377 -30.82789 -28.00831 -27.37459 -26.75295 -24.66349 -23.59845 -23.23417 -22.94743 -21.94279 -21.25987 -19.29178 -18.95815 -18.69696 -18.27334 -17.63830 -17.48267 -17.38758 -16.99649 -16.88215 -16.55127 -16.39679 -16.13378 -15.98290 -15.32300 -15.20277 -15.14626 -14.92160 -14.83844 -14.45501 -14.38428 -14.28637 -14.14776 -14.11776 -13.39475 -13.17110 -13.14286 -12.99370 -12.81630 -12.58657 -12.45841 -12.42094 -12.40260 -11.96271 -11.73624 -11.63486 -11.44082 -11.21516 -10.92589 -10.32882 -10.00879 -9.76905 -9.64605 -9.18254 -0.52655 0.03048 0.33140 0.45642 1.08220 1.38483 1.46977 1.58678 1.76144 1.89258 2.32307 2.58067 2.76683 2.92252 3.11177 3.45467 3.56026 3.76708 3.80117 3.83237 3.84811 3.90844 3.99662 4.05096 4.14581 4.19705 4.30687 4.33684 4.34995 4.38019 4.44114 4.51048 4.56023 4.63871 4.80939 4.81418 4.83862 4.90248 4.96816 4.97440 5.03453 5.07182 5.10629 5.21821 5.25953 5.32792 5.47289 5.61247 5.64107 5.82807 6.37746 6.40978 6.71347 7.05451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.056 4.056 3 C -0.170 4.170 4 C -0.084 4.084 5 C -0.225 4.225 6 C 0.118 3.882 7 O -0.327 6.327 8 C 0.057 3.943 9 C -0.118 4.118 10 C 0.124 3.876 11 N -0.710 5.710 12 C 0.560 3.440 13 O -0.577 6.577 14 C -0.157 4.157 15 C -0.046 4.046 16 C -0.146 4.146 17 C 0.103 3.897 18 F -0.126 7.126 19 C -0.132 4.132 20 C -0.080 4.080 21 O -0.560 6.560 22 Si 0.965 3.035 23 H -0.250 1.250 24 H -0.235 1.235 25 H -0.281 1.281 26 C -0.024 4.024 27 C -0.173 4.173 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.418 0.582 41 H 0.176 0.824 42 H 0.177 0.823 43 H 0.104 0.896 44 H 0.403 0.597 45 H 0.136 0.864 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.417 -2.320 -0.919 4.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.056 4.056 3 C -0.188 4.188 4 C -0.102 4.102 5 C -0.244 4.244 6 C 0.073 3.927 7 O -0.241 6.241 8 C -0.018 4.018 9 C -0.156 4.156 10 C 0.001 3.999 11 N -0.363 5.363 12 C 0.348 3.652 13 O -0.457 6.457 14 C -0.161 4.161 15 C -0.064 4.064 16 C -0.164 4.164 17 C 0.083 3.917 18 F -0.105 7.105 19 C -0.133 4.133 20 C -0.189 4.189 21 O -0.370 6.370 22 Si 0.788 3.212 23 H -0.174 1.174 24 H -0.158 1.158 25 H -0.206 1.206 26 C -0.043 4.043 27 C -0.191 4.191 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.157 0.843 32 H 0.161 0.839 33 H 0.158 0.842 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.257 0.743 41 H 0.194 0.806 42 H 0.194 0.806 43 H 0.122 0.878 44 H 0.254 0.746 45 H 0.154 0.846 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.362 -2.307 -0.296 4.088 hybrid contribution 0.805 -0.023 -0.283 0.853 sum -2.557 -2.329 -0.578 3.507 Atomic orbital electron populations 1.20876 0.89217 1.03840 1.03318 1.20049 0.97363 0.92124 0.96041 1.21290 0.94541 0.98355 1.04658 1.21273 0.94521 0.98194 0.96197 1.21487 1.01135 0.92223 1.09553 1.19152 0.92036 0.84960 0.96564 1.85988 1.20963 1.28403 1.88767 1.22773 0.77464 0.98897 1.02703 1.21550 0.92479 0.95999 1.05546 1.21162 0.92425 0.83532 1.02820 1.45674 1.05924 1.10118 1.74563 1.18335 0.82603 0.88572 0.75682 1.90804 1.60408 1.43046 1.51448 1.20009 0.94340 0.93245 1.08472 1.21524 1.01339 0.89833 0.93726 1.21418 0.92364 1.00086 1.02567 1.17943 0.92991 0.78695 1.02052 1.91584 1.86560 1.38938 1.93397 1.19492 0.95362 0.92756 1.05696 1.24583 0.90829 0.95691 1.07841 1.86392 1.26078 1.31787 1.92693 0.85721 0.80501 0.78192 0.76833 1.17438 1.15793 1.20570 1.20866 0.94126 0.96726 0.92542 1.20521 0.91133 0.99306 1.08164 0.90121 0.90271 0.90782 0.84328 0.83919 0.84185 0.90991 0.90953 0.88976 0.89020 0.91366 0.91287 0.74332 0.80637 0.80609 0.87832 0.74565 0.84609 0.84889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.23 10.01 71.24 0.71 0.95 16 2 C -0.06 -0.15 5.88 -19.88 -0.12 -0.27 16 3 C -0.17 -0.35 9.70 22.28 0.22 -0.14 16 4 C -0.08 -0.16 10.04 22.25 0.22 0.06 16 5 C -0.23 -0.65 9.04 22.36 0.20 -0.45 16 6 C 0.12 0.59 6.69 22.51 0.15 0.74 16 7 O -0.33 -1.11 10.14 -92.48 -0.94 -2.05 16 8 C 0.06 -0.15 4.74 71.98 0.34 0.19 16 9 C -0.12 0.73 5.70 30.59 0.17 0.91 16 10 C 0.12 -0.38 5.67 86.38 0.49 0.11 16 11 N -0.71 2.10 5.51 -466.10 -2.57 -0.46 16 12 C 0.56 2.75 7.77 86.75 0.67 3.42 16 13 O -0.58 -8.17 16.34 -3.94 -0.06 -8.23 16 14 C -0.16 -0.36 5.87 -20.09 -0.12 -0.48 16 15 C -0.05 0.23 9.54 22.52 0.21 0.44 16 16 C -0.15 0.59 10.01 22.27 0.22 0.81 16 17 C 0.10 0.11 6.67 22.47 0.15 0.26 16 18 F -0.13 -0.28 12.82 44.97 0.58 0.30 16 19 C -0.13 -0.46 5.15 -19.86 -0.10 -0.56 16 20 C -0.08 -0.04 2.96 71.23 0.21 0.17 16 21 O -0.56 -0.77 11.47 -148.98 -1.71 -2.48 16 22 Si 0.97 0.91 26.09 68.60 1.79 2.70 16 23 H -0.25 0.01 7.11 99.48 0.71 0.72 16 24 H -0.23 -0.48 5.28 99.48 0.53 0.05 16 25 H -0.28 -1.68 7.11 99.48 0.71 -0.97 16 26 C -0.02 -0.14 8.91 22.52 0.20 0.06 16 27 C -0.17 -0.79 9.64 22.37 0.22 -0.58 16 28 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 29 H 0.08 -0.30 8.09 -2.39 -0.02 -0.32 16 30 H 0.07 -0.22 8.09 -2.39 -0.02 -0.24 16 31 H 0.14 -0.24 8.06 -2.91 -0.02 -0.26 16 32 H 0.14 -0.35 8.06 -2.91 -0.02 -0.37 16 33 H 0.14 -0.12 6.30 -2.91 -0.02 -0.13 16 34 H 0.07 -0.26 7.65 -2.39 -0.02 -0.28 16 35 H 0.07 -0.27 7.67 -2.39 -0.02 -0.28 16 36 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 37 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 38 H 0.07 -0.08 8.14 -2.38 -0.02 -0.09 16 39 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 40 H 0.42 -4.19 6.50 -92.71 -0.60 -4.79 16 41 H 0.18 -2.35 6.40 -2.91 -0.02 -2.37 16 42 H 0.18 -1.72 8.06 -2.91 -0.02 -1.74 16 43 H 0.10 -0.36 7.96 -2.39 -0.02 -0.38 16 44 H 0.40 -3.16 8.74 -74.05 -0.65 -3.80 16 45 H 0.14 1.34 6.71 -2.91 -0.02 1.33 16 46 H 0.13 0.36 8.06 -2.91 -0.02 0.34 16 Total: 0.00 -21.45 382.89 1.50 -19.95 By element: Atomic # 1 Polarization: -15.73 SS G_CDS: 0.35 Total: -15.38 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 4.06 Total: 5.65 kcal Atomic # 7 Polarization: 2.10 SS G_CDS: -2.57 Total: -0.46 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -2.71 Total: -12.76 kcal Atomic # 9 Polarization: -0.28 SS G_CDS: 0.58 Total: 0.30 kcal Atomic # 14 Polarization: 0.91 SS G_CDS: 1.79 Total: 2.70 kcal Total: -21.45 1.50 -19.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001623534825.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.477 kcal (2) G-P(sol) polarization free energy of solvation -21.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds