Wall clock time and date at job start Wed Mar 18 2020 11:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.51542 * 2 1 4 4 C 1.53148 * 109.51100 * 120.09673 * 2 1 3 5 5 C 1.53092 * 108.99112 * 190.82975 * 4 2 1 6 6 C 1.51708 * 108.74121 * 309.87684 * 5 4 2 7 7 S 1.70762 * 124.55878 * 196.89814 * 6 5 4 8 8 C 1.75612 * 91.77332 * 180.02562 * 7 6 5 9 9 C 1.46568 * 125.45701 * 179.97438 * 8 7 6 10 10 O 1.21696 * 120.00233 * 179.69005 * 9 8 7 11 11 N 1.34778 * 119.99922 * 359.69261 * 9 8 7 12 12 N 1.40105 * 120.00290 * 180.02562 * 11 9 8 13 13 C 1.34769 * 120.00039 * 179.97438 * 12 11 9 14 14 O 1.21695 * 120.00185 * 5.08266 * 13 12 11 15 15 C 1.46678 * 119.99761 * 184.80516 * 13 12 11 16 16 C 1.37870 * 126.23555 * 354.76044 * 15 13 12 17 17 C 1.39833 * 107.08796 * 179.85022 * 16 15 13 18 18 C 1.35455 * 107.86533 * 0.41677 * 17 16 15 19 19 C 1.50693 * 125.56542 * 179.75862 * 18 17 16 20 20 O 1.42897 * 109.47275 * 209.97679 * 19 18 17 21 21 Si 1.86302 * 109.47518 * 329.98052 * 19 18 17 22 22 H 1.48501 * 109.47081 * 59.99749 * 21 19 18 23 23 H 1.48498 * 109.47243 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.46968 * 300.00067 * 21 19 18 25 25 N 1.35540 * 108.86857 * 359.74432 * 18 17 16 26 26 C 1.46503 * 125.67574 * 180.02562 * 25 18 17 27 27 C 1.36148 * 109.08309 * 359.67700 * 8 7 6 28 28 C 1.35274 * 124.33467 * 16.60692 * 6 5 4 29 29 C 1.52330 * 122.98894 * 359.97320 * 28 6 5 30 30 H 1.09004 * 109.46849 * 299.90795 * 1 2 3 31 31 H 1.09003 * 109.46890 * 59.89915 * 1 2 3 32 32 H 1.08997 * 109.47491 * 179.90560 * 1 2 3 33 33 H 1.09001 * 109.55502 * 70.97035 * 4 2 1 34 34 H 1.09005 * 109.55498 * 310.68232 * 4 2 1 35 35 H 1.09005 * 109.59476 * 190.09861 * 5 4 2 36 36 H 1.08998 * 109.59378 * 69.65629 * 5 4 2 37 37 H 0.97006 * 119.99951 * 359.97438 * 11 9 8 38 38 H 0.96996 * 119.99748 * 0.02562 * 12 11 9 39 39 H 1.07996 * 126.45409 * 359.97438 * 16 15 13 40 40 H 1.08001 * 126.07090 * 180.16448 * 17 16 15 41 41 H 1.09009 * 109.47121 * 89.98090 * 19 18 17 42 42 H 0.96705 * 114.00222 * 60.00270 * 20 19 18 43 43 H 1.08994 * 109.46834 * 274.54729 * 26 25 18 44 44 H 1.09000 * 109.46765 * 34.54494 * 26 25 18 45 45 H 1.08999 * 109.46658 * 154.54009 * 26 25 18 46 46 H 1.08008 * 122.94562 * 180.20675 * 27 8 7 47 47 H 1.09001 * 109.58306 * 137.13118 * 29 28 6 48 48 H 1.09003 * 109.57953 * 257.53256 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0414 -0.7239 1.2489 5 6 3.5480 -0.4859 1.3807 6 6 4.2095 -0.8026 0.0527 7 16 5.8821 -1.0767 -0.1553 8 6 5.6807 -1.3356 -1.8805 9 6 6.7574 -1.6467 -2.8250 10 8 6.5038 -1.8128 -4.0036 11 7 8.0283 -1.7488 -2.3882 12 7 9.0577 -2.0456 -3.2911 13 6 10.3286 -2.1472 -2.8544 14 8 10.5708 -2.0731 -1.6641 15 6 11.4193 -2.3531 -3.8133 16 6 11.2836 -2.5615 -5.1694 17 6 12.5719 -2.7048 -5.6940 18 6 13.4521 -2.5934 -4.6704 19 6 14.9512 -2.6909 -4.7890 20 8 15.4921 -3.2141 -3.5743 21 14 15.3902 -3.8224 -6.2025 22 1 14.8280 -3.2786 -7.4648 23 1 16.8674 -3.9179 -6.3197 24 1 14.8248 -5.1721 -5.9499 25 7 12.7644 -2.3796 -3.5222 26 6 13.3545 -2.2051 -2.1927 27 6 4.3631 -1.2075 -2.1989 28 6 3.5484 -0.9104 -1.1225 29 6 2.0417 -0.7235 -1.2467 30 1 -0.3633 0.5124 0.8909 31 1 -0.3633 0.5154 -0.8891 32 1 -0.3634 -1.0276 -0.0017 33 1 1.8476 -1.7925 1.1563 34 1 1.5322 -0.3345 2.1305 35 1 3.9543 -1.1359 2.1557 36 1 3.7320 0.5563 1.6414 37 1 8.2305 -1.6160 -1.4488 38 1 8.8557 -2.1773 -4.2306 39 1 10.3571 -2.6038 -5.7226 40 1 12.8208 -2.8779 -6.7305 41 1 15.3662 -1.7001 -4.9744 42 1 15.1661 -4.0955 -3.3460 43 1 13.5221 -3.1817 -1.7386 44 1 14.3046 -1.6786 -2.2832 45 1 12.6759 -1.6250 -1.5673 46 1 3.9877 -1.3263 -3.2046 47 1 1.8193 -0.1275 -2.1319 48 1 1.5584 -1.6971 -1.3286 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822213762.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 18 2020 11:21:03 Heat of formation + Delta-G solvation = -7.494690 kcal Electronic energy + Delta-G solvation = -31023.208999 eV Core-core repulsion = 26672.674268 eV Total energy + Delta-G solvation = -4350.534732 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 377.137 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -42.76036 -41.52080 -40.50480 -39.87067 -37.75407 -36.91241 -36.48711 -34.11072 -33.33279 -32.85024 -31.33939 -30.27968 -27.75298 -27.53520 -26.96173 -25.47450 -23.93951 -23.57269 -22.80174 -21.97597 -21.09666 -20.63391 -19.71612 -19.48694 -18.71659 -18.68263 -18.06839 -17.26388 -17.08317 -16.74287 -16.64347 -16.13453 -16.00802 -15.83598 -15.65909 -15.37317 -15.25854 -15.16325 -14.90813 -14.82741 -14.56543 -14.49643 -14.10841 -13.91835 -13.71810 -13.48756 -13.32402 -13.10779 -13.02167 -12.88107 -12.72125 -12.37272 -12.31149 -12.23964 -12.01972 -11.91038 -11.75097 -11.55923 -11.51170 -11.45362 -11.32927 -10.72611 -9.98604 -9.84667 -9.70452 -9.42732 -9.18525 -0.70278 0.14080 0.25935 0.32381 0.75174 1.05398 1.12389 1.48133 1.57602 1.61861 1.83461 1.83988 2.04572 2.11231 2.69499 3.23518 3.33301 3.53701 3.54565 3.62407 3.76754 3.87490 3.91510 4.02940 4.11990 4.21298 4.31296 4.34719 4.46150 4.50243 4.51400 4.53754 4.62045 4.72820 4.77537 4.80800 4.87594 4.94382 4.95802 4.96957 5.01839 5.04142 5.14340 5.19268 5.27807 5.32903 5.40912 5.44486 5.51358 5.65278 5.83851 6.04391 6.15208 6.45968 6.52641 6.94530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 H 0.071 0.929 4 C -0.110 4.110 5 C -0.055 4.055 6 C -0.180 4.180 7 S 0.228 5.772 8 C -0.299 4.299 9 C 0.601 3.399 10 O -0.556 6.556 11 N -0.515 5.515 12 N -0.505 5.505 13 C 0.596 3.404 14 O -0.570 6.570 15 C -0.077 4.077 16 C -0.121 4.121 17 C -0.217 4.217 18 C 0.024 3.976 19 C -0.063 4.063 20 O -0.551 6.551 21 Si 1.016 2.984 22 H -0.245 1.245 23 H -0.268 1.268 24 H -0.263 1.263 25 N -0.396 5.396 26 C 0.068 3.932 27 C -0.034 4.034 28 C -0.131 4.131 29 C -0.051 4.051 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.434 0.566 38 H 0.442 0.558 39 H 0.168 0.832 40 H 0.168 0.832 41 H 0.136 0.864 42 H 0.389 0.611 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.083 0.917 46 H 0.152 0.848 47 H 0.081 0.919 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.057 0.321 1.777 2.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.089 0.911 4 C -0.149 4.149 5 C -0.094 4.094 6 C -0.300 4.300 7 S 0.499 5.501 8 C -0.420 4.420 9 C 0.389 3.611 10 O -0.434 6.434 11 N -0.263 5.263 12 N -0.254 5.254 13 C 0.386 3.614 14 O -0.450 6.450 15 C -0.191 4.191 16 C -0.148 4.148 17 C -0.241 4.241 18 C -0.095 4.095 19 C -0.172 4.172 20 O -0.357 6.357 21 Si 0.837 3.163 22 H -0.169 1.169 23 H -0.193 1.193 24 H -0.187 1.187 25 N -0.069 5.069 26 C -0.072 4.072 27 C -0.068 4.068 28 C -0.143 4.143 29 C -0.090 4.090 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.277 0.723 38 H 0.287 0.713 39 H 0.186 0.814 40 H 0.185 0.815 41 H 0.154 0.846 42 H 0.238 0.762 43 H 0.105 0.895 44 H 0.122 0.878 45 H 0.102 0.898 46 H 0.170 0.830 47 H 0.100 0.900 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.905 0.328 2.493 2.673 hybrid contribution -1.620 -0.161 -0.621 1.742 sum -0.714 0.167 1.873 2.011 Atomic orbital electron populations 1.21814 0.94056 1.02248 1.02280 1.21137 0.96200 0.99522 0.94130 0.91062 1.21656 0.93476 1.01218 0.98517 1.20602 0.95539 1.03262 0.90012 1.25116 0.98085 1.05681 1.01106 1.82927 1.04221 1.64458 0.98476 1.23657 0.97085 1.22407 0.98828 1.17105 0.80025 0.76446 0.87506 1.90846 1.82806 1.52392 1.17406 1.44610 1.00396 1.72665 1.08590 1.44330 0.99773 1.72515 1.08764 1.17105 0.80639 0.76257 0.87389 1.90806 1.83521 1.53459 1.17230 1.19425 0.83755 1.21609 0.94340 1.21711 0.99753 1.02403 0.90943 1.20999 0.91784 1.11494 0.99775 1.21594 0.95880 1.06315 0.85701 1.25072 0.86271 1.08127 0.97746 1.86487 1.69978 1.38345 1.40887 0.84747 0.79108 0.77065 0.75359 1.16882 1.19296 1.18735 1.43859 1.03932 1.50476 1.08637 1.22387 1.00186 1.04383 0.80267 1.20741 0.90273 0.94686 1.01144 1.19680 0.98385 1.05469 0.90778 1.20675 0.87557 1.01618 0.99179 0.91986 0.92454 0.92355 0.91513 0.89556 0.88843 0.88623 0.72293 0.71333 0.81438 0.81455 0.84605 0.76201 0.89507 0.87848 0.89817 0.83003 0.90007 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.68 9.17 71.98 0.66 1.34 16 2 C -0.09 0.34 2.68 -10.76 -0.03 0.31 16 3 H 0.07 -0.20 8.10 -2.39 -0.02 -0.22 16 4 C -0.11 0.53 5.24 30.67 0.16 0.70 16 5 C -0.06 0.24 6.22 30.20 0.19 0.43 16 6 C -0.18 0.03 6.16 25.32 0.16 0.19 16 7 S 0.23 0.03 22.09 -56.49 -1.25 -1.22 16 8 C -0.30 -1.46 6.43 23.96 0.15 -1.30 16 9 C 0.60 4.83 7.90 86.42 0.68 5.52 16 10 O -0.56 -7.34 16.67 -4.34 -0.07 -7.42 16 11 N -0.51 -3.04 6.25 -176.47 -1.10 -4.15 16 12 N -0.51 -2.71 6.24 -176.39 -1.10 -3.81 16 13 C 0.60 4.36 7.89 86.45 0.68 5.04 16 14 O -0.57 -6.60 14.49 -4.33 -0.06 -6.66 16 15 C -0.08 -0.38 6.89 40.35 0.28 -0.11 16 16 C -0.12 -0.16 10.35 22.57 0.23 0.08 16 17 C -0.22 -0.01 9.37 22.01 0.21 0.19 16 18 C 0.02 0.01 6.14 41.34 0.25 0.27 16 19 C -0.06 0.23 2.90 71.23 0.21 0.43 16 20 O -0.55 1.68 10.49 -148.98 -1.56 0.12 16 21 Si 1.02 -4.19 26.55 68.60 1.82 -2.37 16 22 H -0.25 1.03 6.79 99.48 0.68 1.71 16 23 H -0.27 0.31 7.11 99.48 0.71 1.02 16 24 H -0.26 0.52 7.11 99.48 0.71 1.22 16 25 N -0.40 -1.34 3.16 -519.71 -1.64 -2.99 16 26 C 0.07 0.09 9.28 127.77 1.19 1.28 16 27 C -0.03 -0.14 9.80 21.78 0.21 0.08 16 28 C -0.13 -0.17 5.75 -20.03 -0.12 -0.28 16 29 C -0.05 0.10 5.42 30.36 0.16 0.27 16 30 H 0.06 -0.31 8.14 -2.38 -0.02 -0.33 16 31 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 32 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 33 H 0.07 -0.26 8.10 -2.39 -0.02 -0.28 16 34 H 0.09 -0.59 8.11 -2.38 -0.02 -0.61 16 35 H 0.09 -0.58 8.14 -2.38 -0.02 -0.60 16 36 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 37 H 0.43 1.83 7.12 -213.31 -1.52 0.31 16 38 H 0.44 1.26 6.90 -213.32 -1.47 -0.21 16 39 H 0.17 -0.58 7.45 -2.91 -0.02 -0.61 16 40 H 0.17 -0.67 6.65 -2.91 -0.02 -0.69 16 41 H 0.14 -0.78 7.96 -2.38 -0.02 -0.80 16 42 H 0.39 -3.12 8.70 -74.05 -0.64 -3.76 16 43 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 44 H 0.10 -0.07 7.10 -2.39 -0.02 -0.09 16 45 H 0.08 0.41 6.18 -2.39 -0.01 0.39 16 46 H 0.15 0.57 8.05 -2.91 -0.02 0.54 16 47 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 48 H 0.08 -0.21 8.13 -2.39 -0.02 -0.23 16 Total: 0.00 -17.17 400.07 -1.57 -18.74 By element: Atomic # 1 Polarization: -2.80 SS G_CDS: -1.87 Total: -4.68 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: 5.28 Total: 14.42 kcal Atomic # 7 Polarization: -7.09 SS G_CDS: -3.85 Total: -10.94 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -1.70 Total: -13.96 kcal Atomic # 14 Polarization: -4.19 SS G_CDS: 1.82 Total: -2.37 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -1.25 Total: -1.22 kcal Total: -17.17 -1.57 -18.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822213762.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.246 kcal (2) G-P(sol) polarization free energy of solvation -17.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds