Wall clock time and date at job start Wed Mar 18 2020 10:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86310 * 109.47006 * 2 1 4 4 H 1.48496 * 109.47136 * 300.00401 * 3 2 1 5 5 H 1.48506 * 109.46753 * 60.00226 * 3 2 1 6 6 H 1.48495 * 109.47203 * 179.97438 * 3 2 1 7 7 C 1.50703 * 109.47387 * 240.00475 * 2 1 3 8 8 C 1.38702 * 120.02030 * 284.99777 * 7 2 1 9 9 O 1.35912 * 120.04802 * 359.97438 * 8 7 2 10 10 C 1.42901 * 117.00229 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47316 * 180.02562 * 10 9 8 12 12 C 1.36204 * 120.04218 * 359.97438 * 11 10 9 13 13 C 1.41023 * 118.58995 * 179.72341 * 12 11 10 14 14 O 1.21987 * 120.70631 * 180.27550 * 13 12 11 15 15 N 1.35024 * 118.58616 * 0.25819 * 13 12 11 16 16 C 1.34748 * 119.91060 * 359.97438 * 15 13 12 17 17 C 1.50707 * 119.24780 * 179.97438 * 16 15 13 18 18 C 1.53000 * 117.49572 * 223.74500 * 17 16 15 19 19 C 1.53003 * 117.49431 * 155.08782 * 17 16 15 20 20 N 1.30633 * 121.49492 * 359.97438 * 16 15 13 21 21 C 1.38752 * 119.90755 * 180.25293 * 8 7 2 22 22 C 1.38124 * 119.95052 * 359.44759 * 21 8 7 23 23 C 1.38359 * 120.04569 * 0.55262 * 22 21 8 24 24 Br 1.89104 * 119.95233 * 179.74676 * 23 22 21 25 25 C 1.38166 * 120.02255 * 104.97391 * 7 2 1 26 26 H 0.96700 * 113.99525 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47627 * 119.99674 * 2 1 3 28 28 H 1.09002 * 109.46897 * 60.00591 * 10 9 8 29 29 H 1.08991 * 109.47081 * 300.00289 * 10 9 8 30 30 H 1.08002 * 120.70805 * 0.02562 * 12 11 10 31 31 H 0.96993 * 120.04150 * 180.02562 * 15 13 12 32 32 H 1.08990 * 115.54931 * 9.42113 * 17 16 15 33 33 H 1.08993 * 117.50230 * 0.02562 * 18 17 16 34 34 H 1.09002 * 117.49450 * 145.02509 * 18 17 16 35 35 H 1.09000 * 117.49420 * 214.97976 * 19 17 16 36 36 H 1.09003 * 117.49688 * 359.97438 * 19 17 16 37 37 H 1.08001 * 120.02365 * 179.72314 * 21 8 7 38 38 H 1.08003 * 119.97376 * 180.25477 * 22 21 8 39 39 H 1.07993 * 119.98161 * 0.02562 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 1 1.5549 2.4566 -1.2124 5 1 1.5549 2.4565 1.2126 6 1 3.5349 1.7566 0.0006 7 6 1.9313 -0.7103 -1.2305 8 6 1.8697 -2.0939 -1.3069 9 8 1.3567 -2.8104 -0.2722 10 6 1.3239 -4.2313 -0.4203 11 6 0.7266 -4.8516 0.8165 12 6 0.3202 -4.0604 1.8480 13 6 -0.2399 -4.6728 2.9881 14 8 -0.6212 -4.0008 3.9321 15 7 -0.3455 -6.0187 3.0125 16 6 0.0801 -6.7452 1.9605 17 6 -0.0443 -8.2465 2.0038 18 6 1.1508 -9.0686 1.5172 19 6 -0.1199 -8.9879 0.6675 20 7 0.5980 -6.1777 0.9040 21 6 2.3377 -2.7458 -2.4388 22 6 2.8535 -2.0153 -3.4916 23 6 2.9140 -0.6353 -3.4133 24 35 3.6272 0.3617 -4.8532 25 6 2.4532 0.0163 -2.2835 26 1 -0.3932 -0.8834 -0.0004 27 1 1.7924 -0.5138 0.8900 28 1 2.3380 -4.6054 -0.5612 29 1 0.7166 -4.4924 -1.2868 30 1 0.4203 -2.9865 1.7919 31 1 -0.7278 -6.4618 3.7859 32 1 -0.6254 -8.6462 2.8347 33 1 2.0271 -8.5238 1.1662 34 1 1.3556 -10.0096 2.0279 35 1 -0.7505 -9.8756 0.6196 36 1 -0.0801 -8.3897 -0.2428 37 1 2.2947 -3.8233 -2.4984 38 1 3.2141 -2.5221 -4.3745 39 1 2.5014 1.0935 -2.2244 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839979401.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Mar 18 2020 10:20:45 Heat of formation + Delta-G solvation = -11.410132 kcal Electronic energy + Delta-G solvation = -26084.280155 eV Core-core repulsion = 22120.407915 eV Total energy + Delta-G solvation = -3963.872240 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 380.033 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.99758 -41.66864 -39.43526 -39.10796 -37.62952 -37.58347 -35.82598 -33.25498 -32.72926 -32.15620 -30.10373 -29.03663 -26.92184 -26.63179 -24.61343 -23.23947 -23.01604 -22.57797 -22.12495 -20.14365 -19.58856 -18.98394 -18.35852 -18.05652 -17.54467 -17.13718 -16.92524 -16.68073 -16.46592 -16.12099 -15.71373 -15.47977 -15.39361 -15.33249 -14.75596 -14.51190 -14.40548 -14.05579 -13.85625 -13.21170 -13.13420 -12.97569 -12.83253 -12.32657 -12.29503 -11.94942 -11.90319 -11.71269 -11.49888 -11.47270 -11.37527 -11.36124 -11.28455 -11.21325 -11.08396 -10.19947 -9.66572 -9.31540 -0.61240 -0.04707 -0.00819 0.52624 0.58359 1.11539 1.41669 1.44892 1.48008 1.53741 1.89113 2.25083 2.34344 2.78768 2.97019 3.05810 3.39159 3.53708 3.59107 3.72718 3.82466 3.84662 3.98742 4.03111 4.03771 4.05183 4.14115 4.17663 4.29908 4.38231 4.43188 4.60206 4.64653 4.86912 4.88347 4.94347 4.98946 5.03925 5.16239 5.28874 5.33996 5.36174 5.39664 6.05995 6.53978 6.57520 6.60486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.083 4.083 3 Si 1.017 2.983 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.236 1.236 7 C -0.147 4.147 8 C 0.159 3.841 9 O -0.314 6.314 10 C 0.108 3.892 11 C 0.195 3.805 12 C -0.301 4.301 13 C 0.515 3.485 14 O -0.584 6.584 15 N -0.616 5.616 16 C 0.446 3.554 17 C -0.151 4.151 18 C -0.137 4.137 19 C -0.134 4.134 20 N -0.541 5.541 21 C -0.190 4.190 22 C -0.044 4.044 23 C -0.132 4.132 24 Br -0.051 7.051 25 C -0.069 4.069 26 H 0.376 0.624 27 H 0.087 0.913 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.157 0.843 31 H 0.431 0.569 32 H 0.158 0.842 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.105 0.895 37 H 0.173 0.827 38 H 0.159 0.841 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.670 -10.989 -2.633 11.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.191 4.191 3 Si 0.838 3.162 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.159 1.159 7 C -0.149 4.149 8 C 0.113 3.887 9 O -0.227 6.227 10 C 0.033 3.967 11 C 0.074 3.926 12 C -0.325 4.325 13 C 0.316 3.684 14 O -0.466 6.466 15 N -0.254 5.254 16 C 0.183 3.817 17 C -0.171 4.171 18 C -0.175 4.175 19 C -0.172 4.172 20 N -0.266 5.266 21 C -0.209 4.209 22 C -0.063 4.063 23 C -0.212 4.212 24 Br 0.034 6.966 25 C -0.089 4.089 26 H 0.226 0.774 27 H 0.105 0.895 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.175 0.825 31 H 0.272 0.728 32 H 0.176 0.824 33 H 0.117 0.883 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.123 0.877 37 H 0.190 0.810 38 H 0.177 0.823 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.372 -8.822 -3.208 9.683 hybrid contribution -0.944 -0.645 1.397 1.805 sum 1.428 -9.467 -1.811 9.744 Atomic orbital electron populations 1.86684 1.17329 1.34354 1.97190 1.25170 0.84660 1.13320 0.95991 0.84435 0.79410 0.72362 0.79987 1.18273 1.19564 1.15926 1.19604 1.05578 0.91467 0.98277 1.18766 0.92803 0.90082 0.87080 1.85956 1.77629 1.19792 1.39302 1.21438 1.03578 0.77136 0.94560 1.20678 0.89366 0.88697 0.93875 1.22595 1.11458 1.03696 0.94786 1.17499 0.80441 0.81349 0.89158 1.91004 1.53169 1.62709 1.39715 1.44536 1.51806 1.08854 1.20160 1.22612 0.83489 0.94760 0.80812 1.21350 1.08868 0.82617 1.04262 1.23181 0.91783 1.00710 1.01812 1.23180 1.00422 1.01407 0.92207 1.67722 1.24385 1.10718 1.23795 1.21602 1.04014 1.02318 0.92947 1.21249 0.94786 0.91025 0.99283 1.21760 1.08674 0.95557 0.95191 1.96771 1.84241 1.72864 1.42702 1.20987 0.96012 1.00406 0.91492 0.77448 0.89457 0.86398 0.86270 0.82544 0.72773 0.82421 0.88286 0.85781 0.85921 0.87698 0.80969 0.82330 0.84475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.01 12.65 -148.98 -1.89 -4.90 16 2 C -0.08 -0.27 2.33 71.24 0.17 -0.10 16 3 Si 1.02 3.86 25.75 68.60 1.77 5.63 16 4 H -0.26 -1.32 6.73 99.48 0.67 -0.65 16 5 H -0.27 -1.83 7.11 99.48 0.71 -1.12 16 6 H -0.24 -0.50 7.11 99.48 0.71 0.21 16 7 C -0.15 -0.35 5.28 -19.77 -0.10 -0.45 16 8 C 0.16 -0.16 6.62 22.50 0.15 -0.01 16 9 O -0.31 0.65 7.52 -92.56 -0.70 -0.04 16 10 C 0.11 -0.67 5.30 71.24 0.38 -0.30 16 11 C 0.19 -0.23 6.77 41.83 0.28 0.05 16 12 C -0.30 -1.27 9.38 22.48 0.21 -1.05 16 13 C 0.52 3.85 7.75 84.89 0.66 4.51 16 14 O -0.58 -9.75 17.97 -5.27 -0.09 -9.85 16 15 N -0.62 0.76 5.25 -310.68 -1.63 -0.87 16 16 C 0.45 -1.89 7.38 138.19 1.02 -0.87 16 17 C -0.15 1.57 6.15 -11.54 -0.07 1.50 16 18 C -0.14 1.51 10.11 30.62 0.31 1.82 16 19 C -0.13 1.47 10.02 30.62 0.31 1.78 16 20 N -0.54 1.49 9.37 -175.73 -1.65 -0.15 16 21 C -0.19 0.87 9.04 22.37 0.20 1.07 16 22 C -0.04 0.11 9.78 22.27 0.22 0.32 16 23 C -0.13 -0.25 6.22 22.32 0.14 -0.11 16 24 Br -0.05 -0.14 33.70 -20.37 -0.69 -0.82 16 25 C -0.07 -0.23 8.40 22.27 0.19 -0.04 16 26 H 0.38 0.42 8.60 -74.06 -0.64 -0.22 16 27 H 0.09 0.13 7.83 -2.39 -0.02 0.11 16 28 H 0.12 -1.16 7.65 -2.39 -0.02 -1.18 16 29 H 0.12 -1.20 7.67 -2.39 -0.02 -1.21 16 30 H 0.16 0.81 7.02 -2.91 -0.02 0.79 16 31 H 0.43 -2.59 8.78 -92.71 -0.81 -3.41 16 32 H 0.16 -2.40 8.14 -2.39 -0.02 -2.41 16 33 H 0.10 -0.87 8.14 -2.39 -0.02 -0.89 16 34 H 0.12 -1.70 8.14 -2.39 -0.02 -1.72 16 35 H 0.12 -1.67 8.14 -2.39 -0.02 -1.69 16 36 H 0.10 -0.92 7.78 -2.39 -0.02 -0.94 16 37 H 0.17 -1.92 6.30 -2.91 -0.02 -1.94 16 38 H 0.16 -1.01 8.06 -2.91 -0.02 -1.04 16 39 H 0.14 0.43 4.89 -2.91 -0.01 0.41 16 Total: 0.00 -19.37 350.83 -0.42 -19.79 By element: Atomic # 1 Polarization: -17.31 SS G_CDS: 0.40 Total: -16.90 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 4.05 Total: 8.12 kcal Atomic # 7 Polarization: 2.25 SS G_CDS: -3.28 Total: -1.02 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -2.68 Total: -14.79 kcal Atomic # 14 Polarization: 3.86 SS G_CDS: 1.77 Total: 5.63 kcal Atomic # 35 Polarization: -0.14 SS G_CDS: -0.69 Total: -0.82 kcal Total: -19.37 -0.42 -19.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839979401.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.380 kcal (2) G-P(sol) polarization free energy of solvation -19.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds