Wall clock time and date at job start Wed Apr 1 2020 15:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86303 * 109.47211 * 2 1 4 4 H 1.48498 * 109.46707 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47037 * 299.99702 * 3 2 1 6 6 H 1.48495 * 109.47108 * 59.99780 * 3 2 1 7 7 C 1.50700 * 109.46707 * 119.99842 * 2 1 3 8 8 S 1.70614 * 124.52388 * 245.02327 * 7 2 1 9 9 C 1.75829 * 91.56772 * 179.97438 * 8 7 2 10 10 C 1.46492 * 125.46442 * 180.02562 * 9 8 7 11 11 O 1.21696 * 120.00256 * 180.02562 * 10 9 8 12 12 N 1.34780 * 119.99889 * 0.02562 * 10 9 8 13 13 C 1.38235 * 120.00268 * 184.77333 * 12 10 9 14 14 C 1.36731 * 120.52780 * 122.27179 * 13 12 10 15 15 C 1.39594 * 119.37941 * 179.97438 * 14 13 12 16 16 N 1.31471 * 120.37524 * 0.02562 * 15 14 13 17 17 C 1.34040 * 120.99231 * 359.97438 * 16 15 14 18 18 C 1.38823 * 132.55315 * 179.97438 * 17 16 15 19 19 C 1.38770 * 107.63943 * 180.02562 * 18 17 16 20 20 N 1.31340 * 108.96859 * 0.02562 * 19 18 17 21 21 N 1.36963 * 120.51598 * 302.25187 * 13 12 10 22 22 C 1.36736 * 109.07457 * 0.26242 * 9 8 7 23 23 C 1.33868 * 124.52116 * 64.98431 * 7 2 1 24 24 H 0.96697 * 113.99568 * 300.00728 * 1 2 3 25 25 H 1.08996 * 109.46902 * 239.99790 * 2 1 3 26 26 H 0.97000 * 119.99920 * 4.76422 * 12 10 9 27 27 H 1.08006 * 120.30917 * 359.97438 * 14 13 12 28 28 H 1.07998 * 119.81489 * 180.02562 * 15 14 13 29 29 H 1.07997 * 126.17608 * 359.97438 * 18 17 16 30 30 H 1.07995 * 125.51927 * 179.97438 * 19 18 17 31 31 H 1.08001 * 123.35197 * 179.73860 * 22 9 8 32 32 H 1.07997 * 122.44309 * 0.02562 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 1 3.5351 1.7563 0.0006 5 1 1.5552 2.4564 -1.2125 6 1 1.5551 2.4565 1.2124 7 6 1.9313 -0.7104 1.2305 8 16 2.8132 0.0362 2.4858 9 6 2.9234 -1.4773 3.3739 10 6 3.5911 -1.6584 4.6652 11 8 3.6078 -2.7547 5.1932 12 7 4.1870 -0.6107 5.2685 13 6 4.9011 -0.8004 6.4368 14 6 6.2194 -0.4452 6.5104 15 6 6.9175 -0.6469 7.7023 16 7 6.3145 -1.1739 8.7449 17 6 5.0228 -1.5276 8.6893 18 6 4.1629 -2.0918 9.6218 19 6 2.9246 -2.2434 9.0142 20 7 2.9986 -1.8041 7.7787 21 7 4.2991 -1.3468 7.5390 22 6 2.2905 -2.4594 2.6635 23 6 1.7444 -2.0113 1.4849 24 1 -0.3932 0.4418 0.7650 25 1 1.7924 -0.5138 -0.8899 26 1 4.1148 0.2764 4.8828 27 1 6.7160 -0.0126 5.6543 28 1 7.9589 -0.3686 7.7683 29 1 4.4129 -2.3642 10.6365 30 1 2.0429 -2.6567 9.4813 31 1 2.2234 -3.4843 2.9973 32 1 1.2077 -2.6622 0.8106 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001634303240.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 15:45:53 Heat of formation + Delta-G solvation = 96.696947 kcal Electronic energy + Delta-G solvation = -21572.392440 eV Core-core repulsion = 18129.094032 eV Total energy + Delta-G solvation = -3443.298408 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 304.054 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.38544 -41.23288 -39.56890 -38.95477 -37.58540 -36.82106 -33.69479 -32.11865 -31.75395 -29.94215 -28.15619 -25.71595 -24.51883 -24.44219 -23.36065 -21.97335 -21.04869 -19.94620 -19.49968 -18.67333 -17.98045 -17.71702 -17.45826 -16.83606 -16.65345 -16.53796 -16.21568 -16.02620 -15.71969 -15.09326 -14.94797 -14.52217 -14.24337 -14.02704 -13.84449 -13.78698 -13.55588 -12.88266 -12.64764 -12.54250 -12.42046 -12.12538 -11.90025 -11.54095 -11.11450 -10.90138 -10.80852 -10.47669 -10.08061 -9.85685 -8.79977 -0.91755 -0.59032 -0.11189 0.00742 0.39610 0.82379 0.84016 1.10463 1.17463 1.26353 1.44462 1.67365 1.71789 1.91549 2.42242 2.90922 3.12343 3.20634 3.32517 3.45401 3.78572 3.85382 4.02927 4.05630 4.23675 4.26855 4.35884 4.51761 4.70884 4.79009 4.87294 4.89233 5.04151 5.10478 5.35675 5.55854 5.76363 6.24694 6.48457 6.62302 6.66805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.529 6.529 2 C -0.043 4.043 3 Si 0.886 3.114 4 H -0.230 1.230 5 H -0.220 1.220 6 H -0.231 1.231 7 C -0.221 4.221 8 S 0.184 5.816 9 C -0.264 4.264 10 C 0.602 3.398 11 O -0.479 6.479 12 N -0.675 5.675 13 C 0.425 3.575 14 C -0.234 4.234 15 C 0.191 3.809 16 N -0.463 5.463 17 C 0.263 3.737 18 C -0.258 4.258 19 C 0.089 3.911 20 N -0.293 5.293 21 N -0.314 5.314 22 C -0.037 4.037 23 C -0.117 4.117 24 H 0.379 0.621 25 H 0.131 0.869 26 H 0.422 0.578 27 H 0.171 0.829 28 H 0.187 0.813 29 H 0.166 0.834 30 H 0.199 0.801 31 H 0.159 0.841 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.510 4.752 -3.541 6.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.334 6.334 2 C -0.156 4.156 3 Si 0.705 3.295 4 H -0.153 1.153 5 H -0.142 1.142 6 H -0.154 1.154 7 C -0.340 4.340 8 S 0.451 5.549 9 C -0.384 4.384 10 C 0.389 3.611 11 O -0.351 6.351 12 N -0.328 5.328 13 C 0.216 3.784 14 C -0.261 4.261 15 C 0.006 3.994 16 N -0.175 5.175 17 C 0.036 3.964 18 C -0.289 4.289 19 C -0.090 4.090 20 N -0.117 5.117 21 N -0.090 5.090 22 C -0.071 4.071 23 C -0.148 4.148 24 H 0.227 0.773 25 H 0.149 0.851 26 H 0.262 0.738 27 H 0.189 0.811 28 H 0.204 0.796 29 H 0.183 0.817 30 H 0.216 0.784 31 H 0.177 0.823 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.914 5.873 -3.683 7.192 hybrid contribution -0.805 -1.251 -0.009 1.488 sum 1.108 4.622 -3.691 6.018 Atomic orbital electron populations 1.86569 1.16281 1.81526 1.49044 1.24477 0.85405 1.09720 0.95982 0.86362 0.82429 0.75898 0.84856 1.15317 1.14222 1.15355 1.24670 1.06957 0.99539 1.02875 1.82963 1.50575 1.09877 1.11455 1.24235 1.14074 0.99148 1.00989 1.17018 0.77096 0.83746 0.83191 1.90958 1.56028 1.24319 1.63771 1.43031 1.54638 1.12715 1.22445 1.17340 0.88573 0.93044 0.79484 1.21737 0.90147 1.10987 1.03199 1.23279 1.00659 0.89271 0.86177 1.68262 1.05565 1.13756 1.29918 1.20754 0.88620 1.00376 0.86608 1.21088 0.91878 1.14509 1.01402 1.23950 0.98735 0.95548 0.90760 1.77975 0.92615 1.22893 1.18188 1.47584 1.10865 1.41411 1.09150 1.20911 0.93201 1.00425 0.92522 1.20035 1.02031 0.94674 0.98065 0.77311 0.85110 0.73815 0.81127 0.79584 0.81698 0.78417 0.82323 0.82682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.80 12.88 -35.23 -0.45 0.34 16 2 C -0.04 0.10 2.94 36.01 0.11 0.21 16 3 Si 0.89 -2.29 26.17 -169.99 -4.45 -6.74 16 4 H -0.23 0.53 7.11 56.52 0.40 0.93 16 5 H -0.22 0.31 7.11 56.52 0.40 0.71 16 6 H -0.23 0.59 7.11 56.52 0.40 0.99 16 7 C -0.22 0.33 5.55 -35.84 -0.20 0.13 16 8 S 0.18 -0.33 19.23 -107.50 -2.07 -2.39 16 9 C -0.26 -0.20 6.45 -36.80 -0.24 -0.43 16 10 C 0.60 1.75 7.55 -12.93 -0.10 1.66 16 11 O -0.48 -3.35 15.58 5.19 0.08 -3.27 16 12 N -0.67 -0.36 5.26 -12.46 -0.07 -0.42 16 13 C 0.43 0.88 6.58 -152.58 -1.00 -0.12 16 14 C -0.23 0.28 9.97 -39.62 -0.39 -0.11 16 15 C 0.19 -0.11 11.25 -17.20 -0.19 -0.30 16 16 N -0.46 -1.55 10.49 -12.34 -0.13 -1.68 16 17 C 0.26 1.27 7.92 -155.53 -1.23 0.04 16 18 C -0.26 -0.94 10.92 -39.17 -0.43 -1.37 16 19 C 0.09 0.30 11.95 -17.57 -0.21 0.09 16 20 N -0.29 -1.74 11.51 30.48 0.35 -1.39 16 21 N -0.31 -1.55 3.57 -11.53 -0.04 -1.59 16 22 C -0.04 -0.02 10.01 -40.43 -0.40 -0.42 16 23 C -0.12 0.10 9.99 -41.42 -0.41 -0.31 16 24 H 0.38 -1.73 8.70 45.56 0.40 -1.34 16 25 H 0.13 -0.45 7.96 -51.93 -0.41 -0.86 16 26 H 0.42 -1.18 7.94 -40.82 -0.32 -1.51 16 27 H 0.17 -0.89 8.06 -52.48 -0.42 -1.31 16 28 H 0.19 -0.89 8.06 -52.49 -0.42 -1.32 16 29 H 0.17 0.25 8.06 -52.49 -0.42 -0.17 16 30 H 0.20 -0.10 8.06 -52.49 -0.42 -0.52 16 31 H 0.16 0.05 8.06 -52.49 -0.42 -0.37 16 32 H 0.16 -0.31 8.06 -52.49 -0.42 -0.73 16 LS Contribution 300.03 15.07 4.52 4.52 Total: 0.00 -10.41 300.03 -8.64 -19.05 By element: Atomic # 1 Polarization: -3.81 SS G_CDS: -1.67 Total: -5.49 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -4.71 Total: -0.95 kcal Atomic # 7 Polarization: -5.20 SS G_CDS: 0.11 Total: -5.08 kcal Atomic # 8 Polarization: -2.55 SS G_CDS: -0.37 Total: -2.92 kcal Atomic # 14 Polarization: -2.29 SS G_CDS: -4.45 Total: -6.74 kcal Atomic # 16 Polarization: -0.33 SS G_CDS: -2.07 Total: -2.39 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -10.41 -8.64 -19.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634303240.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.744 kcal (2) G-P(sol) polarization free energy of solvation -10.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds