Wall clock time and date at job start Wed Apr 1 2020 15:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42908 * 1 3 3 Si 1.86303 * 109.47211 * 2 1 4 4 H 1.48498 * 109.46707 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47037 * 299.99702 * 3 2 1 6 6 H 1.48495 * 109.47108 * 59.99780 * 3 2 1 7 7 C 1.50700 * 109.46707 * 119.99842 * 2 1 3 8 8 S 1.70614 * 124.52388 * 245.02327 * 7 2 1 9 9 C 1.75829 * 91.56772 * 179.97438 * 8 7 2 10 10 C 1.46492 * 125.46442 * 180.02562 * 9 8 7 11 11 O 1.21696 * 120.00256 * 180.02562 * 10 9 8 12 12 N 1.34780 * 119.99889 * 0.02562 * 10 9 8 13 13 C 1.38235 * 120.00268 * 184.77333 * 12 10 9 14 14 C 1.36731 * 120.52780 * 122.27179 * 13 12 10 15 15 C 1.39594 * 119.37941 * 179.97438 * 14 13 12 16 16 N 1.31471 * 120.37524 * 0.02562 * 15 14 13 17 17 C 1.34040 * 120.99231 * 359.97438 * 16 15 14 18 18 C 1.38823 * 132.55315 * 179.97438 * 17 16 15 19 19 C 1.38770 * 107.63943 * 180.02562 * 18 17 16 20 20 N 1.31340 * 108.96859 * 0.02562 * 19 18 17 21 21 N 1.36963 * 120.51598 * 302.25187 * 13 12 10 22 22 C 1.36736 * 109.07457 * 0.26242 * 9 8 7 23 23 C 1.33868 * 124.52116 * 64.98431 * 7 2 1 24 24 H 0.96697 * 113.99568 * 300.00728 * 1 2 3 25 25 H 1.08996 * 109.46902 * 239.99790 * 2 1 3 26 26 H 0.97000 * 119.99920 * 4.76422 * 12 10 9 27 27 H 1.08006 * 120.30917 * 359.97438 * 14 13 12 28 28 H 1.07998 * 119.81489 * 180.02562 * 15 14 13 29 29 H 1.07997 * 126.17608 * 359.97438 * 18 17 16 30 30 H 1.07995 * 125.51927 * 179.97438 * 19 18 17 31 31 H 1.08001 * 123.35197 * 179.73860 * 22 9 8 32 32 H 1.07997 * 122.44309 * 0.02562 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 1 3.5351 1.7563 0.0006 5 1 1.5552 2.4564 -1.2125 6 1 1.5551 2.4565 1.2124 7 6 1.9313 -0.7104 1.2305 8 16 2.8132 0.0362 2.4858 9 6 2.9234 -1.4773 3.3739 10 6 3.5911 -1.6584 4.6652 11 8 3.6078 -2.7547 5.1932 12 7 4.1870 -0.6107 5.2685 13 6 4.9011 -0.8004 6.4368 14 6 6.2194 -0.4452 6.5104 15 6 6.9175 -0.6469 7.7023 16 7 6.3145 -1.1739 8.7449 17 6 5.0228 -1.5276 8.6893 18 6 4.1629 -2.0918 9.6218 19 6 2.9246 -2.2434 9.0142 20 7 2.9986 -1.8041 7.7787 21 7 4.2991 -1.3468 7.5390 22 6 2.2905 -2.4594 2.6635 23 6 1.7444 -2.0113 1.4849 24 1 -0.3932 0.4418 0.7650 25 1 1.7924 -0.5138 -0.8899 26 1 4.1148 0.2764 4.8828 27 1 6.7160 -0.0126 5.6543 28 1 7.9589 -0.3686 7.7683 29 1 4.4129 -2.3642 10.6365 30 1 2.0429 -2.6567 9.4813 31 1 2.2234 -3.4843 2.9973 32 1 1.2077 -2.6622 0.8106 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001634303240.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 15:45:53 Heat of formation + Delta-G solvation = 94.362985 kcal Electronic energy + Delta-G solvation = -21572.493648 eV Core-core repulsion = 18129.094032 eV Total energy + Delta-G solvation = -3443.399616 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 304.054 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.51343 -41.37692 -39.50648 -39.03895 -37.47785 -36.96255 -33.82957 -32.18888 -31.72828 -30.08988 -28.12938 -25.74051 -24.56461 -24.44631 -23.41375 -22.13767 -21.05023 -19.94425 -19.59865 -18.72251 -17.99589 -17.67702 -17.45080 -16.91175 -16.63083 -16.51144 -16.19652 -16.03444 -15.74060 -15.21632 -14.87364 -14.55046 -14.16628 -14.04824 -13.82760 -13.71147 -13.68407 -12.84699 -12.64435 -12.49138 -12.29269 -12.23782 -11.80906 -11.68870 -11.26749 -11.02734 -10.63265 -10.60518 -10.04092 -9.74023 -8.97474 -0.92872 -0.63050 -0.19653 0.07457 0.48321 0.76816 1.01962 1.12686 1.36798 1.37846 1.44826 1.56262 1.83395 1.87409 2.32675 2.87078 3.12793 3.29603 3.37081 3.63009 3.81063 3.91975 4.01767 4.09889 4.27888 4.36952 4.42295 4.50276 4.72676 4.79375 4.83935 4.94850 4.98058 5.15360 5.30410 5.44360 5.75945 6.31125 6.52767 6.57283 6.57418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.042 4.042 3 Si 0.905 3.095 4 H -0.230 1.230 5 H -0.238 1.238 6 H -0.228 1.228 7 C -0.217 4.217 8 S 0.232 5.768 9 C -0.288 4.288 10 C 0.602 3.398 11 O -0.531 6.531 12 N -0.661 5.661 13 C 0.387 3.613 14 C -0.207 4.207 15 C 0.198 3.802 16 N -0.494 5.494 17 C 0.244 3.756 18 C -0.279 4.279 19 C 0.085 3.915 20 N -0.336 5.336 21 N -0.325 5.325 22 C -0.044 4.044 23 C -0.124 4.124 24 H 0.391 0.609 25 H 0.142 0.858 26 H 0.436 0.564 27 H 0.217 0.783 28 H 0.233 0.767 29 H 0.177 0.823 30 H 0.225 0.775 31 H 0.150 0.850 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.664 6.311 -4.630 8.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.155 4.155 3 Si 0.725 3.275 4 H -0.152 1.152 5 H -0.160 1.160 6 H -0.151 1.151 7 C -0.338 4.338 8 S 0.501 5.499 9 C -0.408 4.408 10 C 0.391 3.609 11 O -0.406 6.406 12 N -0.315 5.315 13 C 0.178 3.822 14 C -0.233 4.233 15 C 0.015 3.985 16 N -0.207 5.207 17 C 0.017 3.983 18 C -0.310 4.310 19 C -0.093 4.093 20 N -0.160 5.160 21 N -0.101 5.101 22 C -0.078 4.078 23 C -0.155 4.155 24 H 0.241 0.759 25 H 0.159 0.841 26 H 0.279 0.721 27 H 0.234 0.766 28 H 0.249 0.751 29 H 0.195 0.805 30 H 0.242 0.758 31 H 0.167 0.833 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.077 7.486 -4.780 9.400 hybrid contribution -1.074 -1.637 0.243 1.974 sum 2.002 5.848 -4.537 7.668 Atomic orbital electron populations 1.86543 1.16692 1.81867 1.49994 1.24593 0.85106 1.09929 0.95857 0.86089 0.82158 0.75180 0.84089 1.15232 1.16049 1.15077 1.24922 1.06202 0.99452 1.03174 1.82712 1.49529 1.07621 1.10073 1.24186 1.14908 1.00953 1.00762 1.17342 0.76578 0.83429 0.83568 1.90923 1.58154 1.26308 1.65251 1.42885 1.53897 1.12924 1.21777 1.18046 0.89937 0.94673 0.79501 1.22367 0.88565 1.08121 1.04296 1.24185 1.02304 0.86755 0.85231 1.68341 1.04997 1.15545 1.31799 1.21141 0.89511 1.00708 0.86969 1.21375 0.92136 1.15364 1.02119 1.24423 0.99696 0.94992 0.90216 1.77851 0.94005 1.24693 1.19476 1.47742 1.10574 1.41781 1.10029 1.20983 0.93463 1.00263 0.93130 1.20076 1.02431 0.95205 0.97796 0.75913 0.84067 0.72120 0.76610 0.75061 0.80531 0.75825 0.83266 0.81815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 2.07 12.88 -148.98 -1.92 0.16 16 2 C -0.04 0.25 2.94 71.24 0.21 0.46 16 3 Si 0.91 -5.71 26.17 68.60 1.80 -3.91 16 4 H -0.23 1.44 7.11 99.48 0.71 2.15 16 5 H -0.24 0.76 7.11 99.48 0.71 1.47 16 6 H -0.23 1.53 7.11 99.48 0.71 2.24 16 7 C -0.22 0.81 5.55 24.69 0.14 0.94 16 8 S 0.23 -1.02 19.23 -56.49 -1.09 -2.10 16 9 C -0.29 -0.66 6.45 24.07 0.16 -0.51 16 10 C 0.60 4.38 7.55 86.39 0.65 5.03 16 11 O -0.53 -8.87 15.58 -4.34 -0.07 -8.93 16 12 N -0.66 -0.95 5.26 -311.56 -1.64 -2.59 16 13 C 0.39 1.73 6.58 131.34 0.86 2.59 16 14 C -0.21 0.86 9.97 22.24 0.22 1.09 16 15 C 0.20 -0.57 11.25 85.07 0.96 0.39 16 16 N -0.49 -3.39 10.49 -192.95 -2.02 -5.41 16 17 C 0.24 2.74 7.92 133.13 1.05 3.79 16 18 C -0.28 -2.63 10.92 22.54 0.25 -2.38 16 19 C 0.08 0.76 11.95 84.89 1.01 1.78 16 20 N -0.34 -4.82 11.51 -57.48 -0.66 -5.48 16 21 N -0.33 -3.75 3.57 -190.39 -0.68 -4.43 16 22 C -0.04 -0.09 10.01 21.72 0.22 0.12 16 23 C -0.12 0.20 9.99 21.08 0.21 0.41 16 24 H 0.39 -3.88 8.70 -74.06 -0.64 -4.52 16 25 H 0.14 -1.14 7.96 -2.39 -0.02 -1.16 16 26 H 0.44 -2.64 7.94 -92.71 -0.74 -3.38 16 27 H 0.22 -3.07 8.06 -2.91 -0.02 -3.09 16 28 H 0.23 -3.05 8.06 -2.91 -0.02 -3.07 16 29 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 30 H 0.23 0.17 8.06 -2.91 -0.02 0.15 16 31 H 0.15 0.49 8.06 -2.91 -0.02 0.47 16 32 H 0.16 -0.64 8.06 -2.91 -0.02 -0.66 16 Total: 0.00 -27.80 300.03 0.24 -27.56 By element: Atomic # 1 Polarization: -9.14 SS G_CDS: 0.58 Total: -8.56 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 5.94 Total: 13.72 kcal Atomic # 7 Polarization: -12.92 SS G_CDS: -5.00 Total: -17.92 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -1.99 Total: -8.78 kcal Atomic # 14 Polarization: -5.71 SS G_CDS: 1.80 Total: -3.91 kcal Atomic # 16 Polarization: -1.02 SS G_CDS: -1.09 Total: -2.10 kcal Total: -27.80 0.24 -27.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634303240.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.918 kcal (2) G-P(sol) polarization free energy of solvation -27.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds