Wall clock time and date at job start Wed Apr 1 2020 16:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 119.99452 * 2 1 4 4 C 1.35854 * 120.00088 * 179.97438 * 2 1 3 5 5 C 1.37741 * 119.99832 * 50.70981 * 4 2 1 6 6 C 1.41254 * 120.00198 * 21.05393 * 5 4 2 7 7 O 1.21459 * 119.99800 * 194.75639 * 6 5 4 8 8 C 1.48117 * 119.99837 * 201.05080 * 5 4 2 9 9 C 1.39543 * 120.03860 * 359.97438 * 8 5 4 10 10 N 1.32099 * 120.17906 * 180.02562 * 9 8 5 11 11 C 1.31951 * 120.26635 * 359.66246 * 10 9 8 12 12 C 1.39926 * 120.06738 * 0.61570 * 11 10 9 13 13 C 1.47250 * 120.08446 * 179.68623 * 12 11 10 14 14 C 1.33917 * 119.99497 * 179.72426 * 13 12 11 15 15 N 1.37954 * 120.00174 * 81.01523 * 14 13 12 16 16 C 1.46501 * 120.00154 * 76.82148 * 15 14 13 17 17 C 1.46495 * 119.99687 * 256.82456 * 15 14 13 18 18 C 1.50700 * 120.00187 * 359.71989 * 13 12 11 19 19 O 1.42900 * 109.47143 * 228.21396 * 18 13 12 20 20 Si 1.86298 * 109.46976 * 108.21519 * 18 13 12 21 21 H 1.48501 * 109.46919 * 60.00050 * 20 18 13 22 22 H 1.48501 * 109.47418 * 179.97438 * 20 18 13 23 23 H 1.48504 * 109.47389 * 300.00279 * 20 18 13 24 24 N 1.32988 * 120.03641 * 180.02562 * 8 5 4 25 25 H 1.08999 * 109.47162 * 210.38116 * 1 2 3 26 26 H 1.09004 * 109.47350 * 330.38192 * 1 2 3 27 27 H 1.08999 * 109.47500 * 90.38461 * 1 2 3 28 28 H 1.08997 * 109.46885 * 269.99535 * 3 2 1 29 29 H 1.08996 * 109.47286 * 30.00438 * 3 2 1 30 30 H 1.09004 * 109.46365 * 150.00024 * 3 2 1 31 31 H 1.08003 * 120.00047 * 230.70961 * 4 2 1 32 32 H 1.07997 * 119.99828 * 14.75856 * 6 5 4 33 33 H 1.08000 * 119.90954 * 0.02562 * 9 8 5 34 34 H 1.08004 * 119.96884 * 180.29874 * 11 10 9 35 35 H 1.08000 * 119.99974 * 260.73336 * 14 13 12 36 36 H 1.09000 * 109.46857 * 335.78249 * 16 15 14 37 37 H 1.08990 * 109.47358 * 95.78200 * 16 15 14 38 38 H 1.08997 * 109.46906 * 215.78713 * 16 15 14 39 39 H 1.09002 * 109.47715 * 359.97438 * 17 15 14 40 40 H 1.09004 * 109.47466 * 119.99757 * 17 15 14 41 41 H 1.09003 * 109.47072 * 239.99646 * 17 15 14 42 42 H 1.08999 * 109.47112 * 348.21592 * 18 13 12 43 43 H 0.96699 * 113.99390 * 72.57017 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1443 -1.1765 0.0005 5 6 1.8345 -2.1510 -0.9223 6 6 1.1628 -1.8055 -2.1159 7 8 0.6534 -2.6714 -2.7985 8 6 2.2057 -3.5613 -0.6630 9 6 2.8698 -3.9034 0.5156 10 7 3.2027 -5.1602 0.7494 11 6 2.9039 -6.1013 -0.1260 12 6 2.2433 -5.7694 -1.3140 13 6 1.9159 -6.8182 -2.2943 14 6 1.2787 -6.4994 -3.4282 15 7 1.9849 -5.9810 -4.4939 16 6 2.7958 -6.8651 -5.3349 17 6 1.9240 -4.5465 -4.7846 18 6 2.2979 -8.2503 -2.0216 19 8 2.9401 -8.7997 -3.1739 20 14 0.7668 -9.2382 -1.6337 21 1 -0.1626 -9.1855 -2.7908 22 1 1.1430 -10.6496 -1.3656 23 1 0.0993 -8.6673 -0.4363 24 7 1.9074 -4.5027 -1.5537 25 1 -0.3633 -0.8865 0.5197 26 1 -0.3634 0.8934 0.5079 27 1 -0.3634 -0.0069 -1.0276 28 1 2.3791 1.5834 -1.0277 29 1 1.6083 2.0284 0.5139 30 1 3.1498 1.1384 0.5139 31 1 2.9273 -1.3477 0.7245 32 1 1.1022 -0.7715 -2.4215 33 1 3.1123 -3.1386 1.2386 34 1 3.1740 -7.1280 0.0723 35 1 0.2128 -6.6523 -3.5100 36 1 3.0743 -7.7524 -4.7664 37 1 2.2200 -7.1613 -6.2116 38 1 3.6963 -6.3394 -5.6521 39 1 1.2765 -4.0556 -4.0581 40 1 2.9257 -4.1208 -4.7250 41 1 1.5242 -4.3957 -5.7874 42 1 2.9800 -8.2889 -1.1723 43 1 3.8349 -8.4647 -3.3225 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003156702.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 16:08:23 Heat of formation + Delta-G solvation = 103.538189 kcal Electronic energy + Delta-G solvation = -26147.810963 eV Core-core repulsion = 22506.411054 eV Total energy + Delta-G solvation = -3641.399910 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.160 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.74545 -40.12812 -39.14090 -38.63240 -37.14679 -35.01733 -34.72916 -32.57583 -30.28866 -29.45064 -28.77091 -27.62975 -27.24213 -25.33301 -25.09135 -23.53079 -22.96388 -20.63890 -19.66210 -18.63138 -18.16579 -17.98820 -17.14814 -17.06957 -17.02934 -16.58389 -16.50034 -15.91677 -15.80545 -15.57676 -15.51842 -15.36068 -14.91252 -14.65714 -14.41635 -14.25777 -13.84696 -13.76309 -13.53863 -13.33093 -13.21607 -13.18880 -12.86410 -12.56521 -12.08817 -12.05399 -11.97045 -11.96406 -11.50802 -11.08915 -10.99552 -10.59281 -10.23556 -9.56531 -8.93670 -8.68442 -7.70819 -0.87079 -0.43797 0.59773 0.75679 1.40113 1.71147 1.77444 1.81126 2.13722 2.17678 2.52461 3.16184 3.25190 3.50744 3.58114 3.75126 3.78967 3.86002 3.96868 4.09592 4.13218 4.13833 4.26706 4.35836 4.38970 4.50864 4.52589 4.53986 4.56292 4.61745 4.67348 4.70553 4.77297 4.81784 4.92939 4.99115 5.06449 5.16410 5.34789 5.57034 5.65809 5.77445 6.08611 6.27086 6.55814 6.62195 6.73122 6.96531 7.22828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.635 5.635 3 C 0.087 3.913 4 C 0.247 3.753 5 C -0.276 4.276 6 C 0.377 3.623 7 O -0.445 6.445 8 C 0.172 3.828 9 C -0.004 4.004 10 N -0.421 5.421 11 C 0.010 3.990 12 C 0.191 3.809 13 C -0.365 4.365 14 C 0.388 3.612 15 N -0.675 5.675 16 C 0.100 3.900 17 C 0.082 3.918 18 C -0.044 4.044 19 O -0.539 6.539 20 Si 1.002 2.998 21 H -0.254 1.254 22 H -0.257 1.257 23 H -0.251 1.251 24 N -0.446 5.446 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.134 0.866 32 H 0.079 0.921 33 H 0.156 0.844 34 H 0.162 0.838 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.107 0.893 40 H 0.040 0.960 41 H 0.039 0.961 42 H 0.080 0.920 43 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.053 5.712 1.109 5.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.347 5.347 3 C -0.055 4.055 4 C 0.119 3.881 5 C -0.286 4.286 6 C 0.237 3.763 7 O -0.319 6.319 8 C 0.031 3.969 9 C -0.164 4.164 10 N -0.133 5.133 11 C -0.153 4.153 12 C 0.054 3.946 13 C -0.373 4.373 14 C 0.266 3.734 15 N -0.395 5.395 16 C -0.040 4.040 17 C -0.060 4.060 18 C -0.152 4.152 19 O -0.346 6.346 20 Si 0.821 3.179 21 H -0.177 1.177 22 H -0.181 1.181 23 H -0.175 1.175 24 N -0.162 5.162 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.151 0.849 32 H 0.096 0.904 33 H 0.174 0.826 34 H 0.179 0.821 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.125 0.875 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.098 0.902 43 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -0.510 4.703 0.809 4.799 hybrid contribution 1.204 1.120 0.102 1.648 sum 0.695 5.822 0.911 5.934 Atomic orbital electron populations 1.21928 0.77744 1.03590 1.02023 1.45882 1.06038 1.04410 1.78338 1.21847 0.97166 0.84407 1.02077 1.22126 0.91618 0.83662 0.90725 1.20293 1.17456 0.92160 0.98721 1.22032 0.76214 0.93444 0.84602 1.90439 1.34743 1.52994 1.53741 1.20158 0.93456 0.92374 0.90865 1.23335 1.01038 0.94250 0.97729 1.68173 1.14798 1.00771 1.29514 1.23550 0.99157 0.99828 0.92738 1.20301 0.90993 0.89912 0.93354 1.20457 1.24637 0.94076 0.98086 1.21760 0.94472 0.72802 0.84373 1.47034 1.55920 1.07939 1.28632 1.21872 0.93794 0.94825 0.93506 1.21965 1.01767 0.80647 1.01622 1.24381 1.05891 0.94664 0.90294 1.86793 1.32971 1.67799 1.47049 0.84594 0.75085 0.77702 0.80528 1.17723 1.18130 1.17480 1.68910 1.17940 0.99333 1.29973 0.90974 0.90285 0.93025 0.92424 0.90818 0.90874 0.84867 0.90444 0.82637 0.82109 0.88014 0.88885 0.93114 0.92736 0.87490 0.94171 0.94247 0.90173 0.78572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 -0.32 9.62 59.85 0.58 0.25 16 2 N -0.64 2.19 2.76 -189.74 -0.52 1.67 16 3 C 0.09 -0.46 10.73 59.85 0.64 0.18 16 4 C 0.25 -0.57 9.02 -15.95 -0.14 -0.71 16 5 C -0.28 -0.26 5.61 -104.88 -0.59 -0.85 16 6 C 0.38 0.70 9.42 31.88 0.30 1.00 16 7 O -0.45 -2.34 13.05 5.40 0.07 -2.27 16 8 C 0.17 0.62 6.71 -82.83 -0.56 0.07 16 9 C 0.00 -0.01 10.57 -16.95 -0.18 -0.19 16 10 N -0.42 -1.94 10.47 -12.41 -0.13 -2.07 16 11 C 0.01 0.04 10.59 -16.87 -0.18 -0.14 16 12 C 0.19 0.82 6.70 -82.97 -0.56 0.27 16 13 C -0.37 -0.95 4.40 -102.48 -0.45 -1.40 16 14 C 0.39 1.12 7.40 -16.31 -0.12 1.00 16 15 N -0.67 -1.70 3.22 -190.26 -0.61 -2.31 16 16 C 0.10 0.03 10.74 59.85 0.64 0.67 16 17 C 0.08 0.27 10.71 59.84 0.64 0.91 16 18 C -0.04 -0.03 2.58 36.01 0.09 0.07 16 19 O -0.54 -0.04 9.89 -35.23 -0.35 -0.39 16 20 Si 1.00 1.36 28.16 -169.99 -4.79 -3.43 16 21 H -0.25 -0.57 7.11 56.52 0.40 -0.17 16 22 H -0.26 -0.52 7.11 56.52 0.40 -0.12 16 23 H -0.25 -0.52 7.11 56.52 0.40 -0.12 16 24 N -0.45 -2.33 7.41 -6.33 -0.05 -2.38 16 25 H 0.07 -0.20 8.04 -51.93 -0.42 -0.62 16 26 H 0.08 -0.40 7.89 -51.93 -0.41 -0.81 16 27 H 0.05 -0.17 6.98 -51.93 -0.36 -0.53 16 28 H 0.06 -0.30 8.14 -51.93 -0.42 -0.72 16 29 H 0.07 -0.44 7.89 -51.93 -0.41 -0.85 16 30 H 0.07 -0.43 8.04 -51.93 -0.42 -0.85 16 31 H 0.13 -0.56 6.50 -52.48 -0.34 -0.90 16 32 H 0.08 -0.05 7.20 -52.49 -0.38 -0.43 16 33 H 0.16 -0.05 6.35 -52.49 -0.33 -0.38 16 34 H 0.16 0.20 6.01 -52.48 -0.32 -0.12 16 35 H 0.10 0.23 8.05 -52.49 -0.42 -0.19 16 36 H 0.09 -0.05 3.98 -51.93 -0.21 -0.26 16 37 H 0.05 0.00 8.14 -51.93 -0.42 -0.42 16 38 H 0.05 -0.01 8.11 -51.93 -0.42 -0.43 16 39 H 0.11 0.55 4.11 -51.93 -0.21 0.33 16 40 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 41 H 0.04 0.10 8.14 -51.93 -0.42 -0.32 16 42 H 0.08 -0.07 5.56 -51.93 -0.29 -0.36 16 43 H 0.37 -0.90 8.15 45.56 0.37 -0.53 16 LS Contribution 346.52 15.07 5.22 5.22 Total: 0.00 -7.82 346.52 -6.09 -13.90 By element: Atomic # 1 Polarization: -4.03 SS G_CDS: -5.05 Total: -9.08 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 0.12 Total: 1.11 kcal Atomic # 7 Polarization: -3.77 SS G_CDS: -1.31 Total: -5.08 kcal Atomic # 8 Polarization: -2.37 SS G_CDS: -0.28 Total: -2.65 kcal Atomic # 14 Polarization: 1.36 SS G_CDS: -4.79 Total: -3.43 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -7.82 -6.09 -13.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003156702.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.443 kcal (2) G-P(sol) polarization free energy of solvation -7.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds